ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basde22 |
|---|---|
| Clone Library Name | barley_pub |
>UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 273 Score = 176 bits (446), Expect = 3e-44 Identities = 94/148 (63%), Positives = 111/148 (75%), Gaps = 5/148 (3%) Frame = +1 Query: 88 MLRVAGRRISSHLAWRPXXXXXXGRTPLVG-GLPGEDFPWDQN---PRFAIESPFYVAAR 255 MLRVAGRR+SS L+WRP G PL G G+P D + PRF+I+SPF+VA+R Sbjct: 1 MLRVAGRRLSSSLSWRPAAAVARG--PLAGAGVPDRDDDSARGRSQPRFSIDSPFFVASR 58 Query: 256 GFSA-ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLS 432 GFS+ E++VPR+QD GLA+LPAT AA+KNP K+VYDEYNH+RYPPGDPSKRAFAYFVLS Sbjct: 59 GFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLS 118 Query: 433 GGRFVYASXXXXXXXXXXXSMSASKDVL 516 GGRF+YAS SMSASKDVL Sbjct: 119 GGRFIYASLLRLLVLKFVLSMSASKDVL 146
>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 265 Score = 125 bits (315), Expect = 5e-29 Identities = 72/143 (50%), Positives = 89/143 (62%) Frame = +1 Query: 88 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 267 MLRVAGRR+SS A + +D ++P ++ S F RGFS+ Sbjct: 1 MLRVAGRRLSSSAARSSSTFFTRSSFTVT-----DDSSPARSPSPSLTSSFLDQIRGFSS 55 Query: 268 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGGRFV 447 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GGRFV Sbjct: 56 NSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFV 115 Query: 448 YASXXXXXXXXXXXSMSASKDVL 516 YAS SMSASKDVL Sbjct: 116 YASSVRLLILKFVLSMSASKDVL 138
>UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfur subunit 3,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 3) (RISP3) Length = 268 Score = 124 bits (312), Expect = 1e-28 Identities = 72/143 (50%), Positives = 88/143 (61%) Frame = +1 Query: 88 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 267 MLR+AGR++SS A R R P +P ++ S F RGFS+ Sbjct: 1 MLRIAGRKLSSSAATRSSSAFFT-RNPFTFTDDSSSPARSPSPA-SLASQFLDQFRGFSS 58 Query: 268 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGGRFV 447 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GGRFV Sbjct: 59 NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFV 118 Query: 448 YASXXXXXXXXXXXSMSASKDVL 516 YAS SMSASKDVL Sbjct: 119 YASLVRLLILKFVLSMSASKDVL 141
>UCRI5_TOBAC (P51135) Ubiquinol-cytochrome c reductase iron-sulfur subunit 5,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 5) (RISP5) Length = 268 Score = 124 bits (311), Expect = 2e-28 Identities = 72/143 (50%), Positives = 88/143 (61%) Frame = +1 Query: 88 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 267 MLR+AGR++SS A R R P +P ++ S F RGFS+ Sbjct: 1 MLRIAGRKLSSSAAARSSSAFFT-RNPFTFTDDSSSPTRSPSPT-SLASQFLDQFRGFSS 58 Query: 268 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGGRFV 447 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GGRFV Sbjct: 59 NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFV 118 Query: 448 YASXXXXXXXXXXXSMSASKDVL 516 YAS SMSASKDVL Sbjct: 119 YASLVRLLILKFVLSMSASKDVL 141
>UCRI2_TOBAC (P51132) Ubiquinol-cytochrome c reductase iron-sulfur subunit 2,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 2) (RISP2) Length = 272 Score = 123 bits (308), Expect = 3e-28 Identities = 74/147 (50%), Positives = 89/147 (60%), Gaps = 4/147 (2%) Frame = +1 Query: 88 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRF---AIESPFYVAARG 258 MLR+AGRR SS W P + + +PR ++ S F RG Sbjct: 1 MLRIAGRRASSLSRW-PVRSVAPSSSAFISANHFSSDDDSSSPRSISPSLASVFLHHTRG 59 Query: 259 FSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSG 435 FS+ S V + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDPSKRAFAYFVL+G Sbjct: 60 FSSNS-VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTG 118 Query: 436 GRFVYASXXXXXXXXXXXSMSASKDVL 516 GRFVYAS SMSASKDVL Sbjct: 119 GRFVYASLVRLLILKFVLSMSASKDVL 145
>UCRI1_TOBAC (P49729) Ubiquinol-cytochrome c reductase iron-sulfur subunit 1,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 1) (RISP1) (Fragment) Length = 258 Score = 115 bits (289), Expect = 5e-26 Identities = 61/99 (61%), Positives = 73/99 (73%), Gaps = 1/99 (1%) Frame = +1 Query: 223 AIESPFYVAARGFSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDP 399 ++ S F RGFS+ S+ P + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDP Sbjct: 34 SLASVFLHHTRGFSSNSVSP-AHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDP 92 Query: 400 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVL 516 SKRAFAYFVL+GGRFVYAS SMSASKDVL Sbjct: 93 SKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVL 131
>UCRI4_TOBAC (P51134) Ubiquinol-cytochrome c reductase iron-sulfur subunit 4,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 4) (RISP4) Length = 236 Score = 111 bits (278), Expect = 1e-24 Identities = 59/99 (59%), Positives = 71/99 (71%), Gaps = 1/99 (1%) Frame = +1 Query: 223 AIESPFYVAARGFSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDP 399 ++ S + GFS+ S V + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDP Sbjct: 12 SVTSNSFSIISGFSSNS-VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDP 70 Query: 400 SKRAFAYFVLSGGRFVYASXXXXXXXXXXXSMSASKDVL 516 SKRAFAYFVL+GGRFVYAS SMSASKDVL Sbjct: 71 SKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVL 109
>KCAB1_RABIT (Q9XT31) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 438 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 268 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 282 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 337 Query: 267 SRK 259 K Sbjct: 338 QNK 340
>KCAB1_HUMAN (Q14722) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 438 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 268 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 282 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 337 Query: 267 SRK 259 K Sbjct: 338 QNK 340
>KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 408 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 438 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 268 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 271 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 326 Query: 267 SRK 259 K Sbjct: 327 QNK 329
>KCAB1_RAT (P63144) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 438 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 268 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 267 SRK 259 K Sbjct: 320 QNK 322
>KCAB1_MOUSE (P63143) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 438 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 268 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 267 SRK 259 K Sbjct: 320 QNK 322
>KCAB1_CHICK (Q9PWR1) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 438 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 268 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRAALKCYQWLKEKIISEEGRKQ 319 Query: 267 SRK 259 K Sbjct: 320 QTK 322
>KCAB1_BOVIN (Q4PJK1) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 438 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 268 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 267 SRK 259 K Sbjct: 320 QNK 322
>DPOE_EMENI (O93845) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2207 Score = 30.4 bits (67), Expect = 3.0 Identities = 15/64 (23%), Positives = 30/64 (46%) Frame = +1 Query: 190 EDFPWDQNPRFAIESPFYVAARGFSAESLVPRSQDVGLAELPATAAALKNPCAKIVYDEY 369 +D P D +PR I+ +Y+ G + L+ +PA ++NP ++ + E+ Sbjct: 1097 KDDPGDMDPRSVIDWDYYLERLGSVVQKLIT---------IPAALQKIRNPVPRVAHPEW 1147 Query: 370 NHKR 381 +R Sbjct: 1148 LQRR 1151
>MBHL_RHILV (P18636) Uptake hydrogenase large subunit (EC 1.12.99.6)| (Hydrogenlyase) (Membrane-bound hydrogenase large subunit) Length = 596 Score = 29.6 bits (65), Expect = 5.1 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Frame = -2 Query: 387 WVPLVVILVVDNFGTGILQSSRSCWELSQPYI---LAPRNKRFSRKASGSNVEGGFNGEA 217 WV +V L D T L S S W LS P + R K+F + G+ G A Sbjct: 130 WVDVVSALSADPKATSALAQSISDWPLSSPGYFKDIQTRLKKFVESGQLGPFKNGYWGNA 189 Query: 216 RILIPGE 196 +P E Sbjct: 190 SYKLPPE 196
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 29.3 bits (64), Expect = 6.7 Identities = 22/91 (24%), Positives = 35/91 (38%) Frame = -1 Query: 487 GQTLGRANATTRHTQISHRSTQSRQRHACWGHQVGTSCGYTRRRQFWHRDSSEQPQLLGA 308 G + N+T ++ R + R RH +G T C RQFW D E Sbjct: 68 GIAVCEGNSTCSENEVCVRPGECRCRHGYFGANCDTKC----PRQFWGPDCKE------- 116 Query: 307 QPTLHPGSSEQEIQPKSLWQQRRRGIQWRSA 215 + + HP +++ + RR G + A Sbjct: 117 RCSCHPHGQCEDVTGQCTCHARRWGARCEHA 147
>B2_DAUCA (P37707) B2 protein| Length = 207 Score = 29.3 bits (64), Expect = 6.7 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 440 LPPLNTK*AKARLLGSPGGYLLWLYSS*TILAQGFFRAAAVAGSSANPTSW 288 LPP +A G P L+LY+ T G F AA+ G++ +PT+W Sbjct: 97 LPPRYRDSVRAITPGLP----LFLYNYSTHQLHGVFEAASFGGTNIDPTAW 143 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,883,948 Number of Sequences: 219361 Number of extensions: 1457539 Number of successful extensions: 5204 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4883 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5187 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
