ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basde08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog 30 4.9
2ZIPA_SALTI (P0A2N7) Cell division protein zipA homolog 30 4.9
3SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein) 30 8.4

>ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog|
          Length = 328

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 394 PPSR*PEDGARPGDGPSA--LQEAPAVHQEEPILQEFP 501
           PPS+ P+  A+P   PSA   Q A  V + EP+++E P
Sbjct: 146 PPSQAPQPVAQPAPPPSAQTFQPAEPVVEAEPVVEEAP 183



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>ZIPA_SALTI (P0A2N7) Cell division protein zipA homolog|
          Length = 328

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 394 PPSR*PEDGARPGDGPSA--LQEAPAVHQEEPILQEFP 501
           PPS+ P+  A+P   PSA   Q A  V + EP+++E P
Sbjct: 146 PPSQAPQPVAQPAPPPSAQTFQPAEPVVEAEPVVEEAP 183



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>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)|
          Length = 1186

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -3

Query: 630 YRGSSIPSKXRKQNTDRHGHGY*NRQMTSGRTMVYGFVSSWAGGKFLKNGFFLMNGRSFL 451
           +RG S+ S     NTD           TSG +  YG+ SS  GG     G    N  S  
Sbjct: 625 HRGGSVSSTGSSSNTDSSTKNA--GSSTSGGSSTYGYSSSHRGGSVSSTG-SSSNTDSST 681

Query: 450 KS*GSVS--GSCTIFWSA 403
           KS GS +  GS T  +S+
Sbjct: 682 KSAGSSTSGGSSTYGYSS 699


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,700,864
Number of Sequences: 219361
Number of extensions: 1035687
Number of successful extensions: 2783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2780
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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