Clone Name | basdg12 |
---|---|
Clone Library Name | barley_pub |
>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 748 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/62 (32%), Positives = 25/62 (40%) Frame = -3 Query: 332 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 153 ASL G L Y+ +L SHS + L + YY LF + L G L S Sbjct: 236 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNS 295 Query: 152 FI 147 I Sbjct: 296 SI 297
>CCSA_PINTH (P41650) Cytochrome c biogenesis protein ccsA| Length = 320 Score = 29.3 bits (64), Expect = 3.9 Identities = 31/97 (31%), Positives = 39/97 (40%) Frame = -3 Query: 392 VFVTQADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYA 213 +F+T ILA S + V + GTL YR S S G+ + L G Sbjct: 2 IFITLEHILAHISFSLILVVTLIYWGTLVYRIEGLSSSGGKGMIVTFLCTTG-------L 54 Query: 212 LFKGWLLLGKPPGCLCTPTSFITERSFRGLSW*SGLF 102 L WL G P S + E SF LSW S +F Sbjct: 55 LINRWLYSGH------LPLSNLYE-SFMFLSWSSSVF 84
>NHR71_CAEEL (Q9GTD4) Nuclear hormone receptor family member nhr-71| Length = 579 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 242 CAEDERG*AICRSCGMSKCIGRGAFRLRGKQPRK 343 C D G CRSC +KCI G ++ QPR+ Sbjct: 53 CLIDPDGRCACRSCRFTKCIEAG-MKIGAVQPRR 85
>SPRT_VIBVY (Q7MHK4) Protein sprT| Length = 168 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 386 VTQADILASASSTPAFAVASL*GGTLPYRC 297 + Q L A++T FAVAS+ G T YRC Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129
>SPRT_VIBVU (Q8DCA5) Protein sprT| Length = 168 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 386 VTQADILASASSTPAFAVASL*GGTLPYRC 297 + Q L A++T FAVAS+ G T YRC Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129
>CLAT_PIG (P13222) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 640 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/62 (29%), Positives = 25/62 (40%) Frame = -3 Query: 332 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 153 A+L G L Y+ +L SHS + L + YY LF + L G L S Sbjct: 128 ANLISGVLSYKALLDSHSIPIDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQKS 187 Query: 152 FI 147 + Sbjct: 188 SV 189
>TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repeat protein 9)| (Fragment) Length = 336 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = +3 Query: 90 SSRGKQPGSPAKAPK*PLSDKGGGGAKTAR-RFA*KQPPFKECVIAH*SSALALKMNGAK 266 S R PG + P+ P +GGG + AR R A + P + A +++ + NG+ Sbjct: 5 SPRSASPGPASTGPRHPQVAEGGGRERAARSREAGEGPASEAAAAAAGAASGSSGENGSA 64 Query: 267 RSAEAVGC 290 A GC Sbjct: 65 GRQTAAGC 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,635,107 Number of Sequences: 219361 Number of extensions: 1082433 Number of successful extensions: 2432 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2380 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2431 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)