ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basdp24 | 495 | AV926071 | not_full | gb|AY106037.1| Zea mays PCO097164 mRNA sequence Length = 642 | 129 | not_full | ZCH10_RAT (Q5EB97) Zinc finger CCHC domain-containing protein 10 Length = 173 | 17 | -- | --- | - | -- | --- | - |
| basdp23 | 474 | AV926070 | not_full | gb|AY106037.1| Zea mays PCO097164 mRNA sequence Length = 642 | 129 | not_full | ZCH10_RAT (Q5EB97) Zinc finger CCHC domain-containing protein 10 Length = 173 | 21 | -- | --- | - | -- | --- | - |
| basdp22 | 504 | AV836597 | not_full | dbj|AB085819.1| Hordeum vulgare HvEMF2c mRNA, complete cds Length = 2492 | 43 | not_full | EMF2_ARATH (Q8L6Y4) Polycomb protein EMBRYONIC FLOWER 2 Length = 631 | 8 | -- | --- | - | -- | --- | - |
| basdp21 | 547 | AV926069 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | POF13_SCHPO (O94334) F-box protein pof13 Length = 396 | 6 | -- | --- | - | -- | --- | - |
| basdp20 | 520 | AV926068 | not_full | gb|BT009309.1| Triticum aestivum clone wlm1.pk0020.e5:fis, full insert mRNA sequence Length = 1498 | 45 | not_full | CRK_DAUCA (P53681) CDPK-related protein kinase (EC 2.7.11.1) (PK421) Length = 602 | 168 | -- | --- | - | -- | --- | - |
| basdp18 | 471 | AV926067 | not_full | ref|NM_190836.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2862 | 25 | not_full | AAPQ_RHILV (Q52813) General L-amino acid transport system permease protein aapQ Length = 400 | 1 | -- | --- | - | -- | --- | - |
| basdp16 | 544 | AV926066 | not_full | ref|XM_469638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1169 | 57 | not_full | UMP3_ARATH (Q9LEV3) Protein At5g10860, mitochondrial precursor Length = 206 | 47 | -- | --- | - | -- | --- | - |
| basdp15 | 586 | AV926065 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 2 | -- | --- | - | -- | --- | - |
| basdp14 | 148 | AV926064 | not_full | emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene Length = 1931 | 28 | not_full | NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18) Length = 312 | 3 | -- | --- | - | -- | --- | - |
| basdp13 | 168 | AV926063 | not_full | gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 | 36 | not_full | AKR1_CANAL (Q5AL27) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin repeat-containing protein AKR1) Length = 813 | 1 | -- | --- | - | -- | --- | - |
| basdp12 | 148 | AV926062 | not_full | gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 | 11 | not_full | PSBD_PROHO (P51766) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) Length = 351 | 1 | -- | --- | - | -- | --- | - |
| basdp11 | 223 | AV926061 | not_full | gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 | 6 | not_full | OSBL5_HUMAN (Q9H0X9) Oxysterol-binding protein-related protein 5 (OSBP-related protein 5) (ORP-5) Length = 879 | 9 | -- | --- | - | -- | --- | - |
| basdp10 | 563 | AV926060 | not_full | gb|AY103714.1| Zea mays PCO156020 mRNA sequence Length = 591 | 116 | not_full | GRPA_MEDFA (Q09134) Abscisic acid and environmental stress-inducible protein Length = 159 | 109 | -- | --- | - | -- | --- | - |
| basdp08 | 572 | AV926059 | not_full | ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1156 | 125 | not_full | CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 | 106 | -- | --- | - | -- | --- | - |
| basdp07 | 518 | AV926058 | not_full | gb|AF323586.1|AF323586 Oryza sativa aldehyde dehydrogenase (ALDH) mRNA, complete cds Length = 1960 | 52 | not_full | AL7A1_ARATH (Q9SYG7) Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin-1) Length = 508 | 265 | -- | --- | - | -- | --- | - |
| basdp06 | 235 | AV926057 | not_full | ref|XM_550449.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 | 30 | not_full | CXA7_CANFA (P28228) Gap junction alpha-7 protein (Connexin-45) (Cx45) Length = 396 | 4 | -- | --- | - | -- | --- | - |
| basdp05 | 511 | AV926056 | not_full | ref|XM_470141.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2522 | 500 | not_full | HSP71_ARATH (P22953) Heat shock cognate 70 kDa protein 1 (Hsc70.1) Length = 651 | 500 | -- | --- | - | -- | --- | - |
| basdp02 | 538 | AV926055 | not_full | emb|X78185.1|CLHVRPL23 H.vulgare chloroplast rpl23 and rpl2 genes Length = 1841 | 377 | full | RK2_HORVU (P41096) Chloroplast 50S ribosomal protein L2 Length = 273 | 259 | -- | --- | - | -- | --- | - |
| basdo24 | 507 | AV926054 | not_full | gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187215 | 18 | not_full | PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3) Length = 660 | 8 | -- | --- | - | -- | --- | - |
| basdo23 | 459 | AV926053 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basdo22 | 528 | AV926052 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basdo21 | 590 | AV926051 | full | gb|AY429023.1| Agrostis sp. YL-2004 18S ribosomal RNA gene, partial sequence Length = 500 | 500 | not_full | ODBA_BOVIN (P11178) 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) Length = 455 | 56 | -- | --- | - | -- | --- | - |
| basdo19 | 609 | AV926050 | not_full | emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1831 bp) Length = 1831 | 182 | not_full | PAL1_ORYSA (P14717) Phenylalanine ammonia-lyase (EC 4.3.1.5) Length = 701 | 158 | -- | --- | - | -- | --- | - |
| basdo17 | 469 | AV926049 | not_full | dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 | 32 | not_full | ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kelch protein 1) (Flavin-binding kelch repeat F-box protein 1-like protein 2) (FKF1-like protein 2) (F-box only protein 2b) (FBX2b) (Clock-associated PAS protein ZTL) Length = 609 | 38 | -- | --- | - | -- | --- | - |
| basdo16 | 460 | AV926048 | not_full | gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 | 412 | not_full | EDN3_MOUSE (P48299) Endothelin-3 precursor (ET-3) (Preproendothelin-3) (PPET3) Length = 214 | 5 | -- | --- | - | -- | --- | - |
| basdo15 | 534 | AV926047 | not_full | emb|X00408.1|CHHV01 Hordeum vulgare chloroplast genes for ATPase subunits B and E, transfer RNA2-Met and transfer RNA1-Val Length = 3819 | 500 | not_full | SOS_DROME (P26675) Protein son of sevenless Length = 1596 | 4 | -- | --- | - | -- | --- | - |
| basdo14 | 256 | AV926046 | not_full | emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene Length = 1931 | 26 | not_full | WDR50_MOUSE (Q5SSI6) WD-repeat protein 50 Length = 552 | 6 | -- | --- | - | -- | --- | - |
| basdo13 | 250 | AV926045 | not_full | emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene Length = 1931 | 28 | not_full | BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231) Length = 3925 | 11 | -- | --- | - | -- | --- | - |
| basdo09 | 582 | AV836596 | not_full | dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 | 135 | not_full | TPSB_ASPNG (Q00217) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 (EC 2.4.1.15) (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphate glucosyltransferase) Length = 480 | 44 | -- | --- | - | -- | --- | - |
| basdo08 | 453 | AV926044 | not_full | dbj|AK104654.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C04, full insert sequence Length = 1209 | 184 | not_full | IAA17_ORYSA (Q75GB1) Auxin-responsive protein IAA17 (Indoleacetic acid-induced protein 17) Length = 257 | 88 | -- | --- | - | -- | --- | - |
| basdo07 | 672 | AV926043 | not_full | dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D11, full insert sequence Length = 1364 | 18 | not_full | YHG9_YEAST (P38758) Uncharacterized protein YHR009C Length = 523 | 55 | -- | --- | - | -- | --- | - |
| basdo05 | 490 | AV926042 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_KLULA (Q6CQE5) Protein TAR1 Length = 109 | 2 | -- | --- | - | -- | --- | - |
| basdo04 | 538 | AV926041 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 3 | -- | --- | - | -- | --- | - |
| basdo01 | 277 | AV926040 | not_full | gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNOa0279P04, complete sequence Length = 32479 | 53 | not_full | CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2 Length = 544 | 26 | -- | --- | - | -- | --- | - |
| basdn22 | 566 | AV926039 | not_full | gb|AY106093.1| Zea mays PCO112665 mRNA sequence Length = 1087 | 60 | not_full | C1TM_YEAST (P09440) C-1-tetrahydrofolate synthase, mitochondrial precursor (C1-THF synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3. | 48 | -- | --- | - | -- | --- | - |
| basdn21 | 460 | AV836595 | not_full | dbj|AK103447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129G15, full insert sequence Length = 1349 | 104 | not_full | SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol cotransporter) Length = 718 | 6 | -- | --- | - | -- | --- | - |
| basdn20 | 557 | AV926038 | not_full | gb|AY857760.1| Triticum monococcum peroxidase 6 (POX6) mRNA, complete cds Length = 1308 | 495 | full | PER1_ARAHY (P22195) Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1) Length = 316 | 106 | -- | --- | - | -- | --- | - |
| basdn19 | 611 | AV926037 | not_full | ref|NM_197474.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.37), mRNA Length = 708 | 127 | not_full | GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28 kDa cold-induced protein) Length = 236 | 79 | -- | --- | - | -- | --- | - |
| basdn18 | 453 | AV926036 | not_full | gb|AF067732.1|AF067732 Hordeum vulgare ribosomal protein S12 (rps12) mRNA, complete cds Length = 760 | 44 | full | RS12_HORVU (Q9XHS0) 40S ribosomal protein S12 Length = 143 | 81 | -- | --- | - | -- | --- | - |
| basdn13 | 564 | AV926035 | not_full | gb|BT009261.1| Triticum aestivum clone wlk4.pk0018.f9:fis, full insert mRNA sequence Length = 1111 | 85 | not_full | ADA1D_MOUSE (P97714) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor) (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor) Length = 562 | 6 | -- | --- | - | -- | --- | - |
| basdn12 | 524 | AV926034 | not_full | dbj|AK104700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C05, full insert sequence Length = 1357 | 31 | not_full | UBLH2_SCHPO (Q9UUB6) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15) Length = 300 | 27 | -- | --- | - | -- | --- | - |
| basdn11 | 435 | AV926033 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | POF13_SCHPO (O94334) F-box protein pof13 Length = 396 | 13 | -- | --- | - | -- | --- | - |
| basdn08 | 584 | AV926032 | not_full | gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 956 | 55 | not_full | CLIC6_RAT (Q811Q2) Chloride intracellular channel 6 Length = 612 | 120 | -- | --- | - | -- | --- | - |
| basdn07 | 569 | AV926031 | not_full | gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02, complete sequence Length = 150474 | 41 | not_full | TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4 Length = 625 | 17 | -- | --- | - | -- | --- | - |
| basdn06 | 470 | AV926030 | full | ref|NM_190984.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1482 | 47 | not_full | UL61_HCMVA (P16818) Hypothetical protein UL61 Length = 431 | 18 | -- | --- | - | -- | --- | - |
| basdn05 | 318 | AV926029 | not_full | emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chromosome 4, complete sequence Length = 178426 | 26 | not_full | PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC 3.1.3.2) (PAP) Length = 469 | 12 | -- | --- | - | -- | --- | - |
| basdn03 | 545 | AV926028 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_KLULA (Q6CQE5) Protein TAR1 Length = 109 | 2 | -- | --- | - | -- | --- | - |
| basdn01 | 377 | AV926027 | not_full | gb|AY105872.1| Zea mays PCO079046 mRNA sequence Length = 1346 | 123 | not_full | PALI1_KLULA (Q6CXZ7) pH-response regulator palI/RIM9 homolog 1 Length = 220 | 42 | -- | --- | - | -- | --- | - |
| basdm24 | 548 | AV836594 | not_full | gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01, complete sequence Length = 180426 | 224 | not_full | TOM1_CHICK (O12940) Target of Myb protein 1 (Tom-1 protein) Length = 515 | 47 | -- | --- | - | -- | --- | - |
| basdm21 | 535 | AV926026 | not_full | gb|AY049040.1| Triticum aestivum 18S ribosomal RNA gene, partial sequence Length = 1805 | 500 | not_full | RTOA_DICDI (P54681) Protein rtoA (Ratio-A) Length = 400 | 12 | -- | --- | - | -- | --- | - |
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