>AAPQ_RHILV (Q52813) General L-amino acid transport system permease protein|
           aapQ
          Length = 400

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 356 IYXXXXSTIFY*ILTDTVIIGTIWDFRH----AIQRTTTASG 243
           +Y     +IFY ILT  +++G +W   H     + R+ TASG
Sbjct: 22  MYDPKYRSIFYQILTIVILVGFVWWVAHNTAVNLARSNTASG 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,615,944
Number of Sequences: 219361
Number of extensions: 1005684
Number of successful extensions: 2352
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)