ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdp14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene 276 2e-71
2emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA 276 2e-71
3gb|BT016635.1| Zea mays clone Contig468 mRNA sequence 113 1e-22
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 113 1e-22
5dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 113 1e-22
6dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 1e-22
7dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 1e-22
8dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 1e-22
9gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complet... 113 1e-22
10gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA,... 107 9e-21
11gb|AY104072.1| Zea mays PCO110104 mRNA sequence 74 1e-10
12gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 44 0.12
13gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 44 0.12
14gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 40 1.8
15gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete se... 40 1.8
16ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 1.8
17ref|NM_200947.1| Danio rerio zgc:56589 (zgc:56589), mRNA 38 7.1
18gb|BC049334.1| Danio rerio zgc:56589, mRNA (cDNA clone MGC:56589... 38 7.1
19gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence 38 7.1
20emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 38 7.1
21emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 38 7.1
22emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 38 7.1
23emb|BX571845.5| Zebrafish DNA sequence from clone DKEY-18P12 in ... 38 7.1
24gb|AC011270.9| Homo sapiens chromosome 15, clone RP11-5O23, comp... 38 7.1
25gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhe... 38 7.1
26gb|AC159206.2| Mus musculus BAC clone RP23-214M19 from chromosom... 38 7.1
27dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:C... 38 7.1
28gb|U31603.1|BTU31603 Bradypus tridactylus von Willebrand factor ... 38 7.1 
>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene
          Length = 1931

 Score =  276 bits (139), Expect = 2e-71
 Identities = 145/148 (97%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 1384

                                                                        
Query: 61   ggnctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttc 120
            || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1385 ggcctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttc 1444

                                        
Query: 121  ttnaccagcccgaaatgaagcactttag 148
            || |||||||||||||||||||||||||
Sbjct: 1445 ttcaccagcccgaaatgaagcactttag 1472
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>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA
          Length = 502

 Score =  276 bits (139), Expect = 2e-71
 Identities = 145/148 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 242

                                                                       
Query: 61  ggnctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttc 120
           || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 243 ggcctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttc 302

                                       
Query: 121 ttnaccagcccgaaatgaagcactttag 148
           || |||||||||||||||||||||||||
Sbjct: 303 ttcaccagcccgaaatgaagcactttag 330
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>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence
          Length = 792

 Score =  113 bits (57), Expect = 1e-22
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
           ||||||||||| || ||||||||||||||||||||||| ||||| ||||||  ||| || 
Sbjct: 365 gggagggcagccggcgtgcttgagaaccatgaggaggggaggcgttacgccatgcatggc 424

                                                                      
Query: 64  ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
           ||||||  ||  ||||| |||||||||||||||||||||||||  || |||||||||||
Sbjct: 425 ctcagaagctttgtgcacgacaagacccccgagatcatgccagctatcaacaagttctt 483
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  113 bits (57), Expect = 1e-22
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                           
Query: 4       gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
               ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || 
Sbjct: 7602866 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 7602807

                                                                          
Query: 64      ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
               || |||  ||| ||||  ||||||||||| |||||||||||||  || |||||||||||
Sbjct: 7602806 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttctt 7602748
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score =  113 bits (57), Expect = 1e-22
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                         
Query: 4     gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
             ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || 
Sbjct: 26121 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 26062

                                                                        
Query: 64    ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
             || |||  ||| ||||  ||||||||||| |||||||||||||  || |||||||||||
Sbjct: 26061 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttctt 26003
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>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full
           insert sequence
          Length = 576

 Score =  113 bits (57), Expect = 1e-22
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
           ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || 
Sbjct: 207 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 266

                                                                      
Query: 64  ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
           || |||  ||| ||||  ||||||||||| |||||||||||||  || |||||||||||
Sbjct: 267 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttctt 325
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>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full
           insert sequence
          Length = 552

 Score =  113 bits (57), Expect = 1e-22
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
           ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || 
Sbjct: 204 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 263

                                                                      
Query: 64  ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
           || |||  ||| ||||  ||||||||||| |||||||||||||  || |||||||||||
Sbjct: 264 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttctt 322
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>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full
           insert sequence
          Length = 518

 Score =  113 bits (57), Expect = 1e-22
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
           ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || 
Sbjct: 201 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 260

                                                                      
Query: 64  ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
           || |||  ||| ||||  ||||||||||| |||||||||||||  || |||||||||||
Sbjct: 261 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttctt 319
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>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds
          Length = 545

 Score =  113 bits (57), Expect = 1e-22
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
           ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || 
Sbjct: 173 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 232

                                                                      
Query: 64  ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
           || |||  ||| ||||  ||||||||||| |||||||||||||  || |||||||||||
Sbjct: 233 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttctt 291
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>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds
          Length = 510

 Score =  107 bits (54), Expect = 9e-21
 Identities = 100/116 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
           ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || 
Sbjct: 144 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 203

                                                                   
Query: 64  ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagtt 119
           || |||  ||| ||||  ||||||||||| |||||||||||||  || ||||||||
Sbjct: 204 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagtt 259
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>gb|AY104072.1| Zea mays PCO110104 mRNA sequence
          Length = 727

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggn 63
           ||||||||||| || ||||||||||||||||||||||| || || ||||||  ||| || 
Sbjct: 238 gggagggcagctggtgtgcttgagaaccatgaggaggggagacgttacgccatgcatggc 297

                                                                      
Query: 64  ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatnaacaagttctt 122
           || |||  ||  ||||| |||||||| || ||||||||||| | | | |||||||||||
Sbjct: 298 ctaagaagctttgtgcacgacaagactcctgagatcatgcctgcagttaacaagttctt 356
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>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 19    gtgcttgagaaccatgaggagggcag 44
             ||||||| ||||||||||||||||||
Sbjct: 39861 gtgcttgtgaaccatgaggagggcag 39836
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>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 19    gtgcttgagaaccatgaggagggcag 44
             ||||||| ||||||||||||||||||
Sbjct: 10605 gtgcttgtgaaccatgaggagggcag 10630
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>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 97    atcatgccaggaatnaacaagtt 119
             |||||||||||||| ||||||||
Sbjct: 15107 atcatgccaggaatcaacaagtt 15085
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>gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete sequence
          Length = 39974

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     gggagggcagcaggagtgct 23
             ||||||||||||||||||||
Sbjct: 18341 gggagggcagcaggagtgct 18360
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>ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7977.2), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 10  gcagcaggagtgcttgagaa 29
           ||||||||||||||||||||
Sbjct: 898 gcagcaggagtgcttgagaa 917
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>ref|NM_200947.1| Danio rerio zgc:56589 (zgc:56589), mRNA
          Length = 2434

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 11   cagcaggagtgcttgagaa 29
            |||||||||||||||||||
Sbjct: 1891 cagcaggagtgcttgagaa 1873
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>gb|BC049334.1| Danio rerio zgc:56589, mRNA (cDNA clone MGC:56589 IMAGE:5915132),
            complete cds
          Length = 2434

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 11   cagcaggagtgcttgagaa 29
            |||||||||||||||||||
Sbjct: 1891 cagcaggagtgcttgagaa 1873
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>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence
          Length = 567

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                     
Query: 97  atcatgccaggaatnaacaagttctt 122
           |||||||| ||||| |||||||||||
Sbjct: 282 atcatgcctggaatcaacaagttctt 307
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>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
            and a novel gene, complete sequence
          Length = 72540

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    ggcagcaggagtgcttgag 27
            |||||||||||||||||||
Sbjct: 6612 ggcagcaggagtgcttgag 6630
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    ggcgctacgccgagcacgg 62
             |||||||||||||||||||
Sbjct: 58276 ggcgctacgccgagcacgg 58258
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    ggcgctacgccgagcacgg 62
             |||||||||||||||||||
Sbjct: 21942 ggcgctacgccgagcacgg 21960
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>emb|BX571845.5| Zebrafish DNA sequence from clone DKEY-18P12 in linkage group 9, complete
              sequence
          Length = 131458

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     cagcaggagtgcttgagaa 29
              |||||||||||||||||||
Sbjct: 116263 cagcaggagtgcttgagaa 116245
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>gb|AC011270.9| Homo sapiens chromosome 15, clone RP11-5O23, complete sequence
          Length = 149762

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 24    tgagaaccatgaggagggcaggc 46
             |||||||| ||||||||||||||
Sbjct: 93751 tgagaaccctgaggagggcaggc 93729
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>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative
            major fimbrial structural subunit (fimA) genes, complete
            cds
          Length = 12256

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 44   ggcgctacgccgagcacgg 62
            |||||||||||||||||||
Sbjct: 4545 ggcgctacgccgagcacgg 4563
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>gb|AC159206.2| Mus musculus BAC clone RP23-214M19 from chromosome 7, complete sequence
          Length = 224088

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   ccagcccgaaatgaagcac 143
             |||||||||||||||||||
Sbjct: 52541 ccagcccgaaatgaagcac 52559
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>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete
             sequence
          Length = 129610

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     ggcagcaggagtgcttgag 27
             |||||||||||||||||||
Sbjct: 44828 ggcagcaggagtgcttgag 44846
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>gb|U31603.1|BTU31603 Bradypus tridactylus von Willebrand factor (vWF) gene, partial cds
          Length = 1272

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  caggacaagacccccgaga 97
           |||||||||||||||||||
Sbjct: 787 caggacaagacccccgaga 769


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 914,492
Number of Sequences: 3902068
Number of extensions: 914492
Number of successful extensions: 89557
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89504
Number of HSP's gapped (non-prelim): 52
length of query: 148
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 127
effective length of database: 17,151,101,840
effective search space: 2178189933680
effective search space used: 2178189933680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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