ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdn13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009261.1| Triticum aestivum clone wlk4.pk0018.f9:fis, full insert mRNA sequence Length = 1111 Score = 716 bits (361), Expect = 0.0 Identities = 518/569 (91%), Gaps = 6/569 (1%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccgga 61 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 129 ggcttggcaccttcgacactgccgacctggcctccgccgcctaccaggccgcctcccgga 188 Query: 62 gctttatcgaggagaagcgtcgccgccgtggccagtccggtgccgcggcctcacctgctc 121 ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct: 189 gctttatcgaggagaagcgtcgccgccgtggccagtctgtggctgcggcctcacctgctc 248 Query: 122 agtcggccacgtcctca---ccggcgtcgtcttccac---accgacggcatcttcgtcgt 175 |||||| |||| || ||| |||||||||| || ||| |||||||||||||||| Sbjct: 249 ggtcggctgcgtcaacaacaccgacgtcgtcttctactacaccaacggcatcttcgtcgt 308 Query: 176 cctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaagccacca 235 |||||||||||||||||||||| || |||||||| ||||| ||||| ||||| ||||||| Sbjct: 309 cctccacctcggctgctccattcgcacacccgtcgccgtcctctgtcctggaggccacca 368 Query: 236 agctggcagctgagtccatttcgcctgagccgacaccagttcccgtcatggtgtccacca 295 ||| ||||| |||||| | |||||||||||||| ||||||||||||||| ||||||||| Sbjct: 369 agccagcagccgagtccctgtcgcctgagccgaccccagttcccgtcatgttgtccacca 428 Query: 296 cacccgagacagcgcagcttcccgacgacccagagttctaccaggacctcctgcgtgggc 355 | | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 429 cggctgagactgcgcagcttcctgacgacccagagttctaccaggacctcctgcgtggtc 488 Query: 356 ttcagctgccggacattgacccgatggacttccgcgcggggcttgatgccttggacgtct 415 | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 489 tccagctgccggacatcgacccgatggacttccgcgccgggcttgatgccttggacgtct 548 Query: 416 cggaggcgtcggcttacttggacggcgaacaggacctgctgctcggcgacttggccgacg 475 | |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 549 ccgaggcgtcggcttacttggacggcgaacaggatctgctgctcggtgacctggccgacg 608 Query: 476 aggagctggagctggacatggacctcgacatcggtgacgacttcctggagatgcccggct 535 |||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 609 aggacctcgagctggacatggacctcgacatcggcgacgacttcctggagatgcctggct 668 Query: 536 gcgactttggccgaggcatggatgatttc 564 ||||||||||||| ||||||||||||||| Sbjct: 669 gcgactttggccggggcatggatgatttc 697
>gb|BT016869.1| Zea mays clone Contig702 mRNA sequence Length = 1808 Score = 115 bits (58), Expect = 2e-22 Identities = 210/258 (81%), Gaps = 7/258 (2%) Strand = Plus / Minus Query: 305 cagcgcagcttcccgacgacccagagttctaccaggacctcctgcgtgggcttcagctgc 364 |||||||||| || || ||||||||||||||||||||||| ||||| || || ||||||| Sbjct: 667 cagcgcagctgccggaggacccagagttctaccaggaccttctgcgcggcctgcagctgc 608 Query: 365 cggacattgacccgatggacttccgcgcggggcttgatgccttggacgtctcggaggcgt 424 | ||||| |||||| ||||||||||||| ||||| || ||| |||| |||| || ||| Sbjct: 607 ccgacatcgacccgctggacttccgcgccgggctggacgccctggatctctccgatgcg- 549 Query: 425 cggctt--acttggacggcgaacaggacctgctgctcggcgacttggccgacgaggagct 482 | ||| | |||||| |||||| ||||| |||||||| ||||| | ||||||||| | Sbjct: 548 -gacttcggcctggacgacgaacatgacctcctgctcggggacttcggggacgaggagat 490 Query: 483 ggagctggacatggacct---cgacatcggtgacgacttcctggagatgcccggctgcga 539 |||| | ||| | ||||| ||||||| |||| ||||| |||||||||||||||||| Sbjct: 489 ggagatcgacctcgacctcgacgacatcaacgacgtcttcccggagatgcccggctgcga 430 Query: 540 ctttggccgaggcatgga 557 | | ||||| |||||||| Sbjct: 429 cctcggccgcggcatgga 412 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccgga 61 ||||||||||||||||||| || | |||||| || ||||||| | |||||||||||| Sbjct: 943 ggcttggcaccttcgacaccgctggtgcggcctccgcggcctacctgtccgcctcccgga 884 Query: 62 gctttatcgaggagaagcgtcgccgccg 89 |||| ||| |||||||| |||||||| Sbjct: 883 gcttcgccgacgagaagcggcgccgccg 856 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 157 ccgacggcatcttcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtc 215 |||||||| || || ||||| ||| ||||| | |||||||| ||||||||||| ||||| Sbjct: 803 ccgacggcttcctcctcgtcgtccgcctcgaccgctccattcgcgcacccgtcgccgtc 745
>ref|NM_184246.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1773 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 1223 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 1282 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 1283 gatttccgagctgggctggatgc 1305 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 1061 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 1120 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 1121 gccaccaagc 1130 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 918 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 975
>gb|AY341828.1| Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds Length = 1279 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 758 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 817 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 818 gatttccgagctgggctggatgc 840 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 596 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 655 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 656 gccaccaagc 665 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 453 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 510
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 1746814 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 1746873 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 1746874 gatttccgagctgggctggatgc 1746896 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 1746652 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 1746711 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 1746712 gccaccaagc 1746721 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 1746509 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 1746566 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgg 490 |||||||||||||||||||| Sbjct: 40977117 cgacgaggagctggagctgg 40977098
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 89157 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 89216 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 89217 gatttccgagctgggctggatgc 89239 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 88995 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 89054 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 89055 gccaccaagc 89064 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 88852 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 88909
>dbj|AK119645.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G05, full insert sequence Length = 1850 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 1221 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 1280 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 1281 gatttccgagctgggctggatgc 1303 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 1059 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 1118 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 1119 gccaccaagc 1128 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 916 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 973
>dbj|AK102277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089D21, full insert sequence Length = 1772 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 1222 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 1281 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 1282 gatttccgagctgggctggatgc 1304 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 1060 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 1119 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 1120 gccaccaagc 1129 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 917 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 974
>dbj|AK101133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026F23, full insert sequence Length = 1874 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 1217 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 1276 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 1277 gatttccgagctgggctggatgc 1299 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 1055 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 1114 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 1115 gccaccaagc 1124 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 912 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 969
>dbj|AK062063.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D02, full insert sequence Length = 1375 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 322 gacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccgatg 381 ||||||||||||||| |||| | ||||| || || |||||||||||||||||||||||| Sbjct: 645 gacccagagttctacaaggatatactgcgcggtctacagctgccggacattgacccgatg 704 Query: 382 gacttccgcgcggggcttgatgc 404 || ||||| || ||||| ||||| Sbjct: 705 gatttccgagctgggctggatgc 727 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 169 tcgtcgtcctccacctcggctgctccatttgcgcacccgtcaccgtcttctgttctggaa 228 ||||||||||| || || || || ||||| || ||||| || ||||| ||||| || ||| Sbjct: 483 tcgtcgtcctcgacttctgccgcgccattcgcccacccttcgccgtcgtctgtgctcgaa 542 Query: 229 gccaccaagc 238 |||||||||| Sbjct: 543 gccaccaagc 552 Score = 44.1 bits (22), Expect = 0.49 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccgacctggcctctgctgcctaccaggccgcctcccg 59 ||||||||||||| |||||||| || |||||| || ||||||||| | |||||||| Sbjct: 340 ggcttggcacctttgacactgctgatgcggcctccgccgcctaccagtctgcctcccg 397
>gb|AY109326.1| Zea mays CL1256_1 mRNA sequence Length = 2360 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 319 gacgacccagagttctaccaggacctcctgcgtgggcttcagctgccggacattgacccg 378 |||||||| ||||||||||||||||| || || || || |||||||| ||||| |||| Sbjct: 62 gacgacccggagttctaccaggaccttctccgcggcctgcagctgccagacatcagcccg 121 Query: 379 atggacttccgcgcggggcttgatgccttggacgtctc 416 ||||||||||| || |||||||| || |||||||||| Sbjct: 122 atggacttccgtgccgggcttgacgctctggacgtctc 159
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 85 cgccgtggccagtccggtgccg 106 |||||||||||||||||||||| Sbjct: 68681 cgccgtggccagtccggtgccg 68702
>gb|AC039056.7|AC039056 Homo sapiens chromosome 15 clone CTD-2382E5 map 15q14, complete sequence Length = 176708 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 gacctggcctctgctgcctacc 46 |||||||||||||||||||||| Sbjct: 21264 gacctggcctctgctgcctacc 21285
>gb|AC020659.5|AC020659 Homo sapiens chromosome 15 clone RP11-23P13 map 15q14, complete sequence Length = 139376 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 gacctggcctctgctgcctacc 46 |||||||||||||||||||||| Sbjct: 137681 gacctggcctctgctgcctacc 137702
>emb|AL137436.1|HSM802139 Homo sapiens mRNA; cDNA DKFZp761H0824 (from clone DKFZp761H0824) Length = 914 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 gacctggcctctgctgcctacc 46 |||||||||||||||||||||| Sbjct: 35 gacctggcctctgctgcctacc 14
>ref|XM_473262.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccga 26 ||||||||||||||||||| ||||| Sbjct: 719 ggcttggcaccttcgacaccgccga 743
>ref|XM_471705.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 732 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 149 cgtcgtcctccaccccggctgctcc 125
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 54279 cgtcgtcctccaccccggctgctcc 54255
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 468 ggccgacgaggagctggagct 488 ||||||||||||||||||||| Sbjct: 153931 ggccgacgaggagctggagct 153911
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 130260 cgtcgtcctccaccccggctgctcc 130236
>emb|AL663022.4|OSJN00222 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0054D14, complete sequence Length = 160587 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 153625 cgtcgtcctccaccccggctgctcc 153601
>emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05, complete sequence Length = 120635 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 30059 cgtcgtcctccaccccggctgctcc 30035
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 ggcttggcaccttcgacactgccga 26 ||||||||||||||||||| ||||| Sbjct: 26413169 ggcttggcaccttcgacaccgccga 26413145 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 15137164 cgtcgtcctccaccccggctgctcc 15137140 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 13589271 cgtcgtcctccaccccggctgctcc 13589295 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 473 acgaggagctggagctggacatggacct 500 ||||||| ||||| |||||||||||||| Sbjct: 27855651 acgaggacctggacctggacatggacct 27855624
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cgacgaggagctggagctgga 491 ||||||||||||||||||||| Sbjct: 23669247 cgacgaggagctggagctgga 23669267
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 468 ggccgacgaggagctggagct 488 ||||||||||||||||||||| Sbjct: 27278963 ggccgacgaggagctggagct 27278943 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 8721837 cgtcgtcctccaccccggctgctcc 8721813
>dbj|AK121943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107F03, full insert sequence Length = 2924 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cgacgaggagctggagctgga 491 ||||||||||||||||||||| Sbjct: 939 cgacgaggagctggagctgga 959
>dbj|AK111522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M11, full insert sequence Length = 2776 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cgacgaggagctggagctgga 491 ||||||||||||||||||||| Sbjct: 932 cgacgaggagctggagctgga 952
>dbj|AK107680.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A07, full insert sequence Length = 1603 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 ggcttggcaccttcgacactgccga 26 ||||||||||||||||||| ||||| Sbjct: 546 ggcttggcaccttcgacaccgccga 570
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cgacgaggagctggagctgga 491 ||||||||||||||||||||| Sbjct: 23597434 cgacgaggagctggagctgga 23597454
>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157690 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgga 491 ||||||||||||||||||||| Sbjct: 37163 cgacgaggagctggagctgga 37143
>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence Length = 133238 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 170 cgtcgtcctccacctcggctgctcc 194 |||||||||||||| |||||||||| Sbjct: 115734 cgtcgtcctccaccccggctgctcc 115758
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 ggcttggcaccttcgacactgccga 26 ||||||||||||||||||| ||||| Sbjct: 53802 ggcttggcaccttcgacaccgccga 53778
>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128795 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgga 491 ||||||||||||||||||||| Sbjct: 86375 cgacgaggagctggagctgga 86355
>ref|NM_195848.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050M22.4), mRNA Length = 849 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ccgacggcatcttcgtcgtc 176 |||||||||||||||||||| Sbjct: 389 ccgacggcatcttcgtcgtc 408
>ref|NM_190043.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3507 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgg 490 |||||||||||||||||||| Sbjct: 142 cgacgaggagctggagctgg 123
>ref|XM_473467.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1704 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 473 acgaggagctggagctggacatggacct 500 ||||||| ||||| |||||||||||||| Sbjct: 836 acgaggacctggacctggacatggacct 863
>ref|NM_009818.1| Mus musculus catenin (cadherin associated protein), alpha 1 (Ctnna1), mRNA Length = 3713 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1786 gttctggaagccaccaagct 1805
>gb|AC125040.4| Mus musculus BAC clone RP23-335C9 from chromosome 3, complete sequence Length = 203863 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 cttctgttctggaagccacc 234 |||||||||||||||||||| Sbjct: 62401 cttctgttctggaagccacc 62420
>gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, complete sequence Length = 164190 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 49649 gttctggaagccaccaagct 49630
>gb|AC138714.4| Mus musculus chromosome 18 clone RP23-406C12, complete sequence Length = 191928 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 163784 gttctggaagccaccaagct 163765
>gb|AC105305.8| Mus musculus strain C57BL/6J clone rp23-80n4 map 17, complete sequence Length = 214567 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tcttcgtcgtcctccacctc 185 |||||||||||||||||||| Sbjct: 192514 tcttcgtcgtcctccacctc 192533
>gb|AC105302.27| Mus musculus strain C57BL/6J clone rp23-45h18 map 17, complete sequence Length = 238088 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcttcgtcgtcctccacctc 185 |||||||||||||||||||| Sbjct: 180389 tcttcgtcgtcctccacctc 180370
>gb|AC109609.12| Mus musculus strain C57BL/6J clone rp23-167h1 map 17, complete sequence Length = 167619 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcttcgtcgtcctccacctc 185 |||||||||||||||||||| Sbjct: 89270 tcttcgtcgtcctccacctc 89251
>emb|AL353660.11| Human DNA sequence from clone RP11-459P23 on chromosome 13 Contains a novel gene, complete sequence Length = 129241 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ttctgttctggaagccacca 235 |||||||||||||||||||| Sbjct: 78362 ttctgttctggaagccacca 78343
>emb|BX018124.1|CNS08M5C Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA27BF07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 883 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 ggccgacgaggagctggagc 487 |||||||||||||||||||| Sbjct: 193 ggccgacgaggagctggagc 174
>emb|BX018123.1|CNS08M5B Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA27BF07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 738 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 ggccgacgaggagctggagc 487 |||||||||||||||||||| Sbjct: 612 ggccgacgaggagctggagc 631
>gb|BC068316.1| Mus musculus catenin (cadherin associated protein), alpha 1, mRNA (cDNA clone MGC:76718 IMAGE:30106659), complete cds Length = 3696 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1778 gttctggaagccaccaagct 1797
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 473 acgaggagctggagctggacatggacct 500 ||||||| ||||| |||||||||||||| Sbjct: 18504 acgaggacctggacctggacatggacct 18477
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 473 acgaggagctggagctggacatggacct 500 ||||||| ||||| |||||||||||||| Sbjct: 124323 acgaggacctggacctggacatggacct 124296
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 cgaggagaagcgtcgccgccgtggccag 96 ||||||||||| ||||||||| |||||| Sbjct: 1013911 cgaggagaagcctcgccgccgcggccag 1013884
>gb|AY118908.1| Drosophila melanogaster LD20162 full insert cDNA Length = 1505 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gaggagctggagctggacat 494 |||||||||||||||||||| Sbjct: 666 gaggagctggagctggacat 685
>ref|NM_164698.1| Drosophila melanogaster CG31633-RA (CG31633), mRNA Length = 1438 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gaggagctggagctggacat 494 |||||||||||||||||||| Sbjct: 666 gaggagctggagctggacat 685
>gb|AF270790.2| Oreochromis aureus muscle regulatory protein MyoD mRNA, complete cds Length = 1015 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tcgtcgtcctccacctcggc 188 |||||||||||||||||||| Sbjct: 351 tcgtcgtcctccacctcggc 332
>dbj|AK149738.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530014H10 product:catenin alpha 1, full insert sequence Length = 2968 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1801 gttctggaagccaccaagct 1820
>dbj|AK149721.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530013A22 product:catenin alpha 1, full insert sequence Length = 2968 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1801 gttctggaagccaccaagct 1820
>dbj|AK159339.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420016M04 product:catenin alpha 1, full insert sequence Length = 3696 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1801 gttctggaagccaccaagct 1820
>dbj|AK148496.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length enriched library, clone:C820011D19 product:catenin alpha 1, full insert sequence Length = 3671 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1783 gttctggaagccaccaagct 1802
>dbj|AK168635.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920040H08 product:catenin alpha 1, full insert sequence Length = 3699 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1811 gttctggaagccaccaagct 1830
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccgacggcatcttcgtcgtc 176 |||||||||||||||||||| Sbjct: 14491 ccgacggcatcttcgtcgtc 14472
>gb|AC153145.4| Mus musculus BAC clone RP23-222C3 from chromosome 18, complete sequence Length = 193382 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 163777 gttctggaagccaccaagct 163758
>dbj|AK046513.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230399P04 product:catenin alpha 1, full insert sequence Length = 3033 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1145 gttctggaagccaccaagct 1164
>gb|AC092230.1|AC092230 Drosophila melanogaster, chromosome 2L, region 26F-27X, BAC clone BACR25K24, complete sequence Length = 174376 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gaggagctggagctggacat 494 |||||||||||||||||||| Sbjct: 132040 gaggagctggagctggacat 132021
>gb|BC048163.1| Mus musculus catenin (cadherin associated protein), alpha 1, mRNA (cDNA clone MGC:61278 IMAGE:6418358), complete cds Length = 3699 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1774 gttctggaagccaccaagct 1793
>dbj|AK004623.1| Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200007A02 product:catenin alpha 1, full insert sequence Length = 3632 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1744 gttctggaagccaccaagct 1763
>dbj|AK036752.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830169K04 product:catenin alpha 1, full insert sequence Length = 3699 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1811 gttctggaagccaccaagct 1830
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccgacggcatcttcgtcgtc 176 |||||||||||||||||||| Sbjct: 9381007 ccgacggcatcttcgtcgtc 9380988
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgg 490 |||||||||||||||||||| Sbjct: 14047 cgacgaggagctggagctgg 14028
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgg 490 |||||||||||||||||||| Sbjct: 105542 cgacgaggagctggagctgg 105523
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 agaagcgtcgccgccgtggc 93 |||||||||||||||||||| Sbjct: 1404083 agaagcgtcgccgccgtggc 1404102
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 caccgacggcatcttcgtcg 174 |||||||||||||||||||| Sbjct: 3148454 caccgacggcatcttcgtcg 3148435
>gb|AY960831.1| Lolium perenne C-repeat/DRE-binding factor 3 (CBF3) mRNA, complete cds Length = 942 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ggcaccttcgacactgccga 26 |||||||||||||||||||| Sbjct: 350 ggcaccttcgacactgccga 369
>dbj|AK111704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E24, full insert sequence Length = 1983 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 473 acgaggagctggagctggacatggacct 500 ||||||| ||||| |||||||||||||| Sbjct: 948 acgaggacctggacctggacatggacct 975
>dbj|AK072640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P13, full insert sequence Length = 3055 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgg 490 |||||||||||||||||||| Sbjct: 229 cgacgaggagctggagctgg 210
>dbj|AK066698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073H18, full insert sequence Length = 3884 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgacgaggagctggagctgg 490 |||||||||||||||||||| Sbjct: 249 cgacgaggagctggagctgg 230
>gb|AE003614.4| Drosophila melanogaster chromosome 2L, section 23 of 83 of the complete sequence Length = 259718 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gaggagctggagctggacat 494 |||||||||||||||||||| Sbjct: 158596 gaggagctggagctggacat 158577
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcttcgtcgtcctccacctc 185 |||||||||||||||||||| Sbjct: 1412 tcttcgtcgtcctccacctc 1393
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcttcgtcgtcctccacctc 185 |||||||||||||||||||| Sbjct: 1406 tcttcgtcgtcctccacctc 1387
>dbj|D90362.1|MUSCAP102 Mus musculus mRNA for cadherin associated protein, complete cds (CAP102/alpha catenin) Length = 3668 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1777 gttctggaagccaccaagct 1796
>gb|AC093319.18| Mus musculus strain C57BL/6J chromosome 17 clone rp23-258p19, complete sequence Length = 166527 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tcttcgtcgtcctccacctc 185 |||||||||||||||||||| Sbjct: 82348 tcttcgtcgtcctccacctc 82367
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 cgacgaggagctggagctgg 490 |||||||||||||||||||| Sbjct: 765555 cgacgaggagctggagctgg 765574
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccgacggcatcttcgtcgtc 176 |||||||||||||||||||| Sbjct: 9387046 ccgacggcatcttcgtcgtc 9387027
>gb|AC004301.1|AC004301 Drosophila melanogaster DNA sequence (P1 DS07134 (D192)), complete sequence Length = 68620 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gaggagctggagctggacat 494 |||||||||||||||||||| Sbjct: 20789 gaggagctggagctggacat 20770
>gb|BC060174.1| Mus musculus cDNA clone IMAGE:6827383, containing frame-shift errors Length = 3693 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1781 gttctggaagccaccaagct 1800
>emb|AL365322.10| Mouse DNA sequence from clone RP23-282D4 on chromosome 1, complete sequence Length = 259487 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gtcatggtgtccaccacacc 299 |||||||||||||||||||| Sbjct: 139224 gtcatggtgtccaccacacc 139205
>emb|X59990.1|MMALPA M.musculus alpha-catenin gene for alpha-catenin Length = 3713 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gttctggaagccaccaagct 239 |||||||||||||||||||| Sbjct: 1786 gttctggaagccaccaagct 1805 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,936,470 Number of Sequences: 3902068 Number of extensions: 3936470 Number of successful extensions: 86956 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85954 Number of HSP's gapped (non-prelim): 1001 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
