ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdn07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome... 254 3e-64
2gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 254 3e-64
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
4dbj|AK100711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
5ref|XM_483157.1| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
7dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
8dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
9dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
11dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
12dbj|AK069053.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 6e-13
13ref|XM_467531.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
14dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
15dbj|AK064958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
16gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cance... 46 0.13
17emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, ... 44 0.49
18emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, B... 44 0.49
19gb|AF410884.1|AF410884 Mycobacterium avium subsp. paratuberculos... 44 0.49
20gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.49
21dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone... 44 0.49
22gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retro... 42 2.0
23ref|XM_387612.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 2.0
24gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume ... 42 2.0
25gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 2.0
26gb|AF543828.1| Drosophila pseudoobscura phospholipase C gamma (s... 40 7.7
27emb|Z99295.1|SPAC22A12 S.pombe chromosome I cosmid c22A12 40 7.7
28emb|BX294144.1| Pirellula sp. strain 1 complete genome; segment ... 40 7.7
29emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 7.7
30gb|AY072058.1| Cavia porcellus muscarinic receptor 1 (GPM1) mRNA... 40 7.7
31emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase... 40 7.7
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
34gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete... 40 7.7
35gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.7
36dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
37dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
38dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
39dbj|AK066545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
40emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.7
41gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.7 
>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02,
              complete sequence
          Length = 150474

 Score =  254 bits (128), Expect = 3e-64
 Identities = 209/236 (88%)
 Strand = Plus / Minus

                                                                          
Query: 334    gatcgcagccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctacta 393
              |||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||
Sbjct: 126759 gatctcagccaaggtcaactcgctcacctccattgagactgagttgcccttcagctacta 126700

                                                                          
Query: 394    cagccttccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcga 453
              |||| | |||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 126699 cagcttgccctactgtaagcccccggaaggcgtcaagaagagcgccgagaacctcggcga 126640

                                                                          
Query: 454    ggttctcatgggtgaccagatcgacaactcgccgtaccacttccacgtcaacaccaacga 513
              | | ||||||||||| ||||||||||| ||||| ||||  ||||  ||||||   |||||
Sbjct: 126639 gatcctcatgggtgatcagatcgacaattcgccataccggttccgagtcaacgtgaacga 126580

                                                                      
Query: 514    gtcgctgtacctttgcaccaccgacccgctcaccaaggagcaggccgagctgttga 569
              |||  ||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 126579 gtccgtgtacctatgcaccacggacccactcaccaaggagcaggccgagctgttga 126524



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                
Query: 286    cttctacctcccgggcaccttcatgcacacctac 319
              |||||||||||||||||| |||||||||||||||
Sbjct: 126807 cttctacctcccgggcacattcatgcacacctac 126774
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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
             complete sequence
          Length = 136713

 Score =  254 bits (128), Expect = 3e-64
 Identities = 209/236 (88%)
 Strand = Plus / Minus

                                                                         
Query: 334   gatcgcagccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctacta 393
             |||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||
Sbjct: 24926 gatctcagccaaggtcaactcgctcacctccattgagactgagttgcccttcagctacta 24867

                                                                         
Query: 394   cagccttccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcga 453
             |||| | |||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 24866 cagcttgccctactgtaagcccccggaaggcgtcaagaagagcgccgagaacctcggcga 24807

                                                                         
Query: 454   ggttctcatgggtgaccagatcgacaactcgccgtaccacttccacgtcaacaccaacga 513
             | | ||||||||||| ||||||||||| ||||| ||||  ||||  ||||||   |||||
Sbjct: 24806 gatcctcatgggtgatcagatcgacaattcgccataccggttccgagtcaacgtgaacga 24747

                                                                     
Query: 514   gtcgctgtacctttgcaccaccgacccgctcaccaaggagcaggccgagctgttga 569
             |||  ||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 24746 gtccgtgtacctatgcaccacggacccactcaccaaggagcaggccgagctgttga 24691



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 286   cttctacctcccgggcaccttcatgcacacctac 319
             |||||||||||||||||| |||||||||||||||
Sbjct: 24974 cttctacctcccgggcacattcatgcacacctac 24941
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  254 bits (128), Expect = 3e-64
 Identities = 209/236 (88%)
 Strand = Plus / Minus

                                                                           
Query: 334     gatcgcagccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctacta 393
               |||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||
Sbjct: 4048894 gatctcagccaaggtcaactcgctcacctccattgagactgagttgcccttcagctacta 4048835

                                                                           
Query: 394     cagccttccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcga 453
               |||| | |||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 4048834 cagcttgccctactgtaagcccccggaaggcgtcaagaagagcgccgagaacctcggcga 4048775

                                                                           
Query: 454     ggttctcatgggtgaccagatcgacaactcgccgtaccacttccacgtcaacaccaacga 513
               | | ||||||||||| ||||||||||| ||||| ||||  ||||  ||||||   |||||
Sbjct: 4048774 gatcctcatgggtgatcagatcgacaattcgccataccggttccgagtcaacgtgaacga 4048715

                                                                       
Query: 514     gtcgctgtacctttgcaccaccgacccgctcaccaaggagcaggccgagctgttga 569
               |||  ||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 4048714 gtccgtgtacctatgcaccacggacccactcaccaaggagcaggccgagctgttga 4048659



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                 
Query: 286     cttctacctcccgggcaccttcatgcacacctac 319
               |||||||||||||||||| |||||||||||||||
Sbjct: 4048942 cttctacctcccgggcacattcatgcacacctac 4048909
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>dbj|AK100711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H14, full
           insert sequence
          Length = 2407

 Score =  254 bits (128), Expect = 3e-64
 Identities = 209/236 (88%)
 Strand = Plus / Plus

                                                                       
Query: 334 gatcgcagccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctacta 393
           |||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||
Sbjct: 247 gatctcagccaaggtcaactcgctcacctccattgagactgagttgcccttcagctacta 306

                                                                       
Query: 394 cagccttccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcga 453
           |||| | |||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 307 cagcttgccctactgtaagcccccggaaggcgtcaagaagagcgccgagaacctcggcga 366

                                                                       
Query: 454 ggttctcatgggtgaccagatcgacaactcgccgtaccacttccacgtcaacaccaacga 513
           | | ||||||||||| ||||||||||| ||||| ||||  ||||  ||||||   |||||
Sbjct: 367 gatcctcatgggtgatcagatcgacaattcgccataccggttccgagtcaacgtgaacga 426

                                                                   
Query: 514 gtcgctgtacctttgcaccaccgacccgctcaccaaggagcaggccgagctgttga 569
           |||  ||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 427 gtccgtgtacctatgcaccacggacccactcaccaaggagcaggccgagctgttga 482



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 286 cttctacctcccgggcaccttcatgcacacctac 319
           |||||||||||||||||| |||||||||||||||
Sbjct: 199 cttctacctcccgggcacattcatgcacacctac 232
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>ref|XM_483157.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2616

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 116/140 (82%)
 Strand = Plus / Plus

                                                                       
Query: 341 gccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagcctt 400
           |||||||| ||||| || |||||||||||||| ||| |||| ||||||||||||||||| 
Sbjct: 292 gccaaggtgaactcccttacgtccatcgagacagagatgccattcagctactacagcctg 351

                                                                       
Query: 401 ccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctc 460
           || ||||||  ||||   |  ||| | |||||||| || ||||||||||| ||  |||||
Sbjct: 352 ccatactgccggccccaaggcggcattaagaagagcgctgagaacctcggtgaacttctc 411

                               
Query: 461 atgggtgaccagatcgacaa 480
           |||||||| ||||| |||||
Sbjct: 412 atgggtgatcagatagacaa 431
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                            
Query: 341      gccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagcctt 400
                |||||||| ||||| || |||||||||||||| ||| |||| ||||||||||||||||| 
Sbjct: 24532768 gccaaggtgaactcccttacgtccatcgagacagagatgccattcagctactacagcctg 24532709

                                                                            
Query: 401      ccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctc 460
                || ||||||  ||||   |  ||| | |||||||| || ||||||||||| ||  |||||
Sbjct: 24532708 ccatactgccggccccaaggcggcattaagaagagcgctgagaacctcggtgaacttctc 24532649

                                    
Query: 461      atgggtgaccagatcgacaa 480
                |||||||| ||||| |||||
Sbjct: 24532648 atgggtgatcagatagacaa 24532629
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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026F07
          Length = 137354

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                         
Query: 341   gccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagcctt 400
             |||||||| ||||| || |||||||||||||| ||| |||| ||||||||||||||||| 
Sbjct: 41028 gccaaggtgaactcccttacgtccatcgagacagagatgccattcagctactacagcctg 40969

                                                                         
Query: 401   ccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctc 460
             || ||||||  ||||   |  ||| | |||||||| || ||||||||||| ||  |||||
Sbjct: 40968 ccatactgccggccccaaggcggcattaagaagagcgctgagaacctcggtgaacttctc 40909

                                 
Query: 461   atgggtgaccagatcgacaa 480
             |||||||| ||||| |||||
Sbjct: 40908 atgggtgatcagatagacaa 40889
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>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1142B04
          Length = 161964

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                          
Query: 341    gccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagcctt 400
              |||||||| ||||| || |||||||||||||| ||| |||| ||||||||||||||||| 
Sbjct: 148484 gccaaggtgaactcccttacgtccatcgagacagagatgccattcagctactacagcctg 148425

                                                                          
Query: 401    ccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctc 460
              || ||||||  ||||   |  ||| | |||||||| || ||||||||||| ||  |||||
Sbjct: 148424 ccatactgccggccccaaggcggcattaagaagagcgctgagaacctcggtgaacttctc 148365

                                  
Query: 461    atgggtgaccagatcgacaa 480
              |||||||| ||||| |||||
Sbjct: 148364 atgggtgatcagatagacaa 148345
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>dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K01, full
           insert sequence
          Length = 2616

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 116/140 (82%)
 Strand = Plus / Plus

                                                                       
Query: 341 gccaaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagcctt 400
           |||||||| ||||| || |||||||||||||| ||| |||| ||||||||||||||||| 
Sbjct: 292 gccaaggtgaactcccttacgtccatcgagacagagatgccattcagctactacagcctg 351

                                                                       
Query: 401 ccctactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctc 460
           || ||||||  ||||   |  ||| | |||||||| || ||||||||||| ||  |||||
Sbjct: 352 ccatactgccggccccaaggcggcattaagaagagcgctgagaacctcggtgaacttctc 411

                               
Query: 461 atgggtgaccagatcgacaa 480
           |||||||| ||||| |||||
Sbjct: 412 atgggtgatcagatagacaa 431
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 126/154 (81%)
 Strand = Plus / Minus

                                                                            
Query: 344      aaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagccttccc 403
                ||||| ||||| ||||| |||||||| |||||| | |||| ||||||||||||||| || 
Sbjct: 33977897 aaggtgaactccctcacctccatcgacaccgagatcccctacagctactacagcctcccg 33977838

                                                                            
Query: 404      tactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctcatg 463
                | |||||  ||  | || ||||||||| | || |||||||||||||||||| | ||||||
Sbjct: 33977837 ttctgcacccctcccgacggcgtcaaggacagcgccgagaacctcggcgagctcctcatg 33977778

                                                  
Query: 464      ggtgaccagatcgacaactcgccgtaccacttcc 497
                || ||||  ||||| ||||| || |||| |||||
Sbjct: 33977777 ggcgaccgcatcgagaactccccctaccgcttcc 33977744



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 344      aaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagccttccc 403
                ||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || || 
Sbjct: 30003943 aaggtgaactcactcacttccattgagactgaactgccattcagctactacagtctccca 30004002

                      
Query: 404      tactgc 409
                ||||||
Sbjct: 30004003 tactgc 30004008
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>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1695_D07
          Length = 110585

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 126/154 (81%)
 Strand = Plus / Minus

                                                                        
Query: 344  aaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagccttccc 403
            ||||| ||||| ||||| |||||||| |||||| | |||| ||||||||||||||| || 
Sbjct: 5172 aaggtgaactccctcacctccatcgacaccgagatcccctacagctactacagcctcccg 5113

                                                                        
Query: 404  tactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctcatg 463
            | |||||  ||  | || ||||||||| | || |||||||||||||||||| | ||||||
Sbjct: 5112 ttctgcacccctcccgacggcgtcaaggacagcgccgagaacctcggcgagctcctcatg 5053

                                              
Query: 464  ggtgaccagatcgacaactcgccgtaccacttcc 497
            || ||||  ||||| ||||| || |||| |||||
Sbjct: 5052 ggcgaccgcatcgagaactccccctaccgcttcc 5019
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>dbj|AK069053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004J10, full
           insert sequence
          Length = 2414

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                       
Query: 344 aaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagccttccc 403
           ||||| ||||| ||||| |||||||| |||||| | |||| ||||||||||||||| || 
Sbjct: 347 aaggtgaactccctcacctccatcgacaccgagatcccctacagctactacagcctcccg 406

                                                                       
Query: 404 tactgcaagcccacggaaggcgtcaagaagagtgccgagaacctcggcgaggttctcatg 463
           | |||||  ||  | || ||||||||| | || |||||||||||||||||| | ||||||
Sbjct: 407 ttctgcacccctcccgacggcgtcaaggacagcgccgagaacctcggcgagctcctcatg 466

                                             
Query: 464 ggtgaccagatcgacaactcgccgtaccacttcc 497
           || ||||  ||||| ||||| || |||| |||||
Sbjct: 467 ggcgaccgcatcgagaactccccctaccgcttcc 500
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>ref|XM_467531.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2341

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 344 aaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagccttccc 403
           ||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || || 
Sbjct: 310 aaggtgaactcactcacttccattgagactgaactgccattcagctactacagtctccca 369

                 
Query: 404 tactgc 409
           ||||||
Sbjct: 370 tactgc 375
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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654B04
          Length = 156907

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                          
Query: 344    aaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagccttccc 403
              ||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || || 
Sbjct: 104219 aaggtgaactcactcacttccattgagactgaactgccattcagctactacagtctccca 104278

                    
Query: 404    tactgc 409
              ||||||
Sbjct: 104279 tactgc 104284
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>dbj|AK064958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A11, full
           insert sequence
          Length = 2341

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 344 aaggtcaactcgctcacgtccatcgagaccgagctgcccttcagctactacagccttccc 403
           ||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || || 
Sbjct: 310 aaggtgaactcactcacttccattgagactgaactgccattcagctactacagtctccca 369

                 
Query: 404 tactgc 409
           ||||||
Sbjct: 370 tactgc 375
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>gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 232002

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 195    ttgctgcaatggtctccaagatg 217
              |||||||||||||||||||||||
Sbjct: 108242 ttgctgcaatggtctccaagatg 108264
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>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
          Length = 196107

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                        
Query: 426    tcaagaagagtgccgagaacctcggcgaggttctcatgggtgaccagatcgacaactc 483
              ||||||| ||||| ||||| || || ||| ||||||||||||| ||||| || |||||
Sbjct: 142094 tcaagaaaagtgctgagaatcttggtgagcttctcatgggtgatcagattgataactc 142037
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>emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, BAC clone  T20K18 (ESSA
           project)
          Length = 79375

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 426 tcaagaagagtgccgagaacctcggcgaggttctcatgggtgaccagatcgacaactc 483
           ||||||| ||||| ||||| || || ||| ||||||||||||| ||||| || |||||
Sbjct: 482 tcaagaaaagtgctgagaatcttggtgagcttctcatgggtgatcagattgataactc 425
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>gb|AF410884.1|AF410884 Mycobacterium avium subsp. paratuberculosis
           S-adenosyl-L-homocysteine hydrolase (sahH) gene, partial
           cds; and thimidylate kinase (tmk), MtrA (mtrA), MtrB
           (mtrB), and LpqB (lpqB) genes, complete cds
          Length = 5402

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 541 gctcaccaaggagcaggccgag 562
           ||||||||||||||||||||||
Sbjct: 216 gctcaccaaggagcaggccgag 237
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 541     gctcaccaaggagcaggccgag 562
               ||||||||||||||||||||||
Sbjct: 3734518 gctcaccaaggagcaggccgag 3734497
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>dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT21K08, TM0191,
             complete sequence
          Length = 76693

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 374   gagctgcccttcagctactacagcct 399
             ||||| ||||||||||||||||||||
Sbjct: 69572 gagcttcccttcagctactacagcct 69547



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 428   aagaagagtgccgagaacctcggcgaggttctcatgggtgaccagatcgacaactc 483
             ||||| ||||| ||||| ||||||||  | || |||||||||||||| || |||||
Sbjct: 69518 aagaaaagtgctgagaatctcggcgaactccttatgggtgaccagattgataactc 69463
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>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
            xilon1 retrotransposon, helitron B73_14578, gypsy
            retrotransposon huck1 and ruda retrotransposon, complete
            sequence
          Length = 152384

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 73   gcctcgggctcgggagcgtcg 93
            |||||||||||||||||||||
Sbjct: 1716 gcctcgggctcgggagcgtcg 1736
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>ref|XM_387612.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07436.1)
           partial mRNA
          Length = 1197

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 440 gagaacctcggcgaggttctc 460
           |||||||||||||||||||||
Sbjct: 60  gagaacctcggcgaggttctc 40
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>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1)
              gene, complete cds
          Length = 169976

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 73     gcctcgggctcgggagcgtcg 93
              |||||||||||||||||||||
Sbjct: 136508 gcctcgggctcgggagcgtcg 136488
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 547    caaggagcaggccgagctgtt 567
              |||||||||||||||||||||
Sbjct: 952248 caaggagcaggccgagctgtt 952268
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>gb|AF543828.1| Drosophila pseudoobscura phospholipase C gamma (sl) gene, complete
            cds
          Length = 5545

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 544  caccaaggagcaggccgagc 563
            ||||||||||||||||||||
Sbjct: 3047 caccaaggagcaggccgagc 3066
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>emb|Z99295.1|SPAC22A12 S.pombe chromosome I cosmid c22A12
          Length = 32814

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 491   cacttccacgtcaacaccaa 510
             ||||||||||||||||||||
Sbjct: 31302 cacttccacgtcaacaccaa 31283
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>emb|BX294144.1| Pirellula sp. strain 1 complete genome; segment 12/24
          Length = 304850

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   caactcgctcacgtccatcg 368
             ||||||||||||||||||||
Sbjct: 30640 caactcgctcacgtccatcg 30659
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    ggtcgccgcctcctccttgt 134
              ||||||||||||||||||||
Sbjct: 190922 ggtcgccgcctcctccttgt 190903
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>gb|AY072058.1| Cavia porcellus muscarinic receptor 1 (GPM1) mRNA, partial cds
          Length = 1399

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 283 cgccttctacctcccgggcaccttcatg 310
           ||||||||||||||||| |||| |||||
Sbjct: 611 cgccttctacctcccggtcaccgtcatg 638
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>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes)
          Length = 355060

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    cagatctgaggtggagctct 169
              ||||||||||||||||||||
Sbjct: 303086 cagatctgaggtggagctct 303067
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 277     cgccgacgccttctacctcc 296
               ||||||||||||||||||||
Sbjct: 8388116 cgccgacgccttctacctcc 8388135
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 437      gccgagaacctcggcgaggt 456
                ||||||||||||||||||||
Sbjct: 26248708 gccgagaacctcggcgaggt 26248727
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>gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete sequence
          Length = 137506

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    cagatctgaggtggagctct 169
              ||||||||||||||||||||
Sbjct: 105318 cagatctgaggtggagctct 105337
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 104     gacctcgcccaggtcgccgc 123
               ||||||||||||||||||||
Sbjct: 1430013 gacctcgcccaggtcgccgc 1430032
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>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0021G06
          Length = 137678

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   cgccgacgccttctacctcc 296
             ||||||||||||||||||||
Sbjct: 93214 cgccgacgccttctacctcc 93233
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>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0453H04
          Length = 175047

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    gccgagaacctcggcgaggt 456
              ||||||||||||||||||||
Sbjct: 113248 gccgagaacctcggcgaggt 113267
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>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0056I06
          Length = 138653

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   cgccgacgccttctacctcc 296
             ||||||||||||||||||||
Sbjct: 19709 cgccgacgccttctacctcc 19728
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>dbj|AK066545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069A19, full
           insert sequence
          Length = 2291

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 gccgagaacctcggcgaggt 456
           ||||||||||||||||||||
Sbjct: 318 gccgagaacctcggcgaggt 337
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     acctcgcccaggtcgccgcc 124
               ||||||||||||||||||||
Sbjct: 3380762 acctcgcccaggtcgccgcc 3380743
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 337     cgcagccaaggtcaactcgctcac 360
               |||||||||||| |||||||||||
Sbjct: 1975435 cgcagccaaggttaactcgctcac 1975458



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ctgcagcccatcgccgacgc 285
              ||||||||||||||||||||
Sbjct: 982771 ctgcagcccatcgccgacgc 982790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,327,133
Number of Sequences: 3902068
Number of extensions: 3327133
Number of successful extensions: 67208
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66412
Number of HSP's gapped (non-prelim): 793
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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