ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdo14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene 428 e-117
2emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA 428 e-117
3gb|BT016635.1| Zea mays clone Contig468 mRNA sequence 111 1e-21
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 103 3e-19
5dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 103 3e-19
6dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
7dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
8dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
9gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complet... 103 3e-19
10gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA,... 96 6e-17
11gb|AY104072.1| Zea mays PCO110104 mRNA sequence 70 4e-09
12gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence 50 0.003
13gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 46 0.054
14gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 44 0.21
15gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 44 0.21
16ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 ... 42 0.84
17emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B... 42 0.84
18gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 0.84
19emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Co... 42 0.84
20emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Co... 42 0.84
21gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 0.84
22gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 3.3
23gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, co... 40 3.3
24emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.3
25emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.3
26gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhe... 40 3.3 
>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene
          Length = 1931

 Score =  428 bits (216), Expect = e-117
 Identities = 240/246 (97%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gggtcagcaagnaggggcagggcagcangtagtgcttgagaaccatgaggagggcaggcg 60
            |||||||||||  |||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1314 gggtcagcaagatgggg-agggcagcagg-agtgcttgagaaccatgaggagggcaggcg 1371

                                                                        
Query: 61   ctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccagg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 ctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccagg 1431

                                                                        
Query: 121  aatcaacaagttcttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 aatcaacaagttcttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcg 1491

                                                                        
Query: 181  ctattagaaactgttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgc 240
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 ctattagcaactgttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgc 1551

                  
Query: 241  gtccat 246
            ||||||
Sbjct: 1552 gtccat 1557
to top
>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA
          Length = 502

 Score =  428 bits (216), Expect = e-117
 Identities = 240/246 (97%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtcagcaagnaggggcagggcagcangtagtgcttgagaaccatgaggagggcaggcg 60
           |||||||||||  |||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 172 gggtcagcaagatgggg-agggcagcagg-agtgcttgagaaccatgaggagggcaggcg 229

                                                                       
Query: 61  ctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccagg 289

                                                                       
Query: 121 aatcaacaagttcttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aatcaacaagttcttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcg 349

                                                                       
Query: 181 ctattagaaactgttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctattagcaactgttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgc 409

                 
Query: 241 gtccat 246
           ||||||
Sbjct: 410 gtccat 415
to top
>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence
          Length = 792

 Score =  111 bits (56), Expect = 1e-21
 Identities = 92/104 (88%)
 Strand = Plus / Plus

                                                                       
Query: 32  gtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgtg 91
           ||||||||||||||||||||||| ||||| ||||||  ||| |||||||||  ||  |||
Sbjct: 380 gtgcttgagaaccatgaggaggggaggcgttacgccatgcatggcctcagaagctttgtg 439

                                                       
Query: 92  caggacaagacccccgagatcatgccaggaatcaacaagttctt 135
           || |||||||||||||||||||||||||  ||||||||||||||
Sbjct: 440 cacgacaagacccccgagatcatgccagctatcaacaagttctt 483
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  103 bits (52), Expect = 3e-19
 Identities = 94/108 (87%)
 Strand = Plus / Minus

                                                                           
Query: 31      agtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgt 90
               |||||| ||||||||||||||||| ||||||||||| ||||| || || |||  ||| ||
Sbjct: 7602852 agtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggctaagaaactatgt 7602793

                                                               
Query: 91      gcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
               ||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 7602792 gcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 7602745
to top
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score =  103 bits (52), Expect = 3e-19
 Identities = 94/108 (87%)
 Strand = Plus / Minus

                                                                         
Query: 31    agtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgt 90
             |||||| ||||||||||||||||| ||||||||||| ||||| || || |||  ||| ||
Sbjct: 26107 agtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggctaagaaactatgt 26048

                                                             
Query: 91    gcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
             ||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 26047 gcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 26000
to top
>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full
           insert sequence
          Length = 576

 Score =  103 bits (52), Expect = 3e-19
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 31  agtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgt 90
           |||||| ||||||||||||||||| ||||||||||| ||||| || || |||  ||| ||
Sbjct: 221 agtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggctaagaaactatgt 280

                                                           
Query: 91  gcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
           ||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 281 gcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 328
to top
>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full
           insert sequence
          Length = 552

 Score =  103 bits (52), Expect = 3e-19
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 31  agtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgt 90
           |||||| ||||||||||||||||| ||||||||||| ||||| || || |||  ||| ||
Sbjct: 218 agtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggctaagaaactatgt 277

                                                           
Query: 91  gcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
           ||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 278 gcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 325
to top
>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full
           insert sequence
          Length = 518

 Score =  103 bits (52), Expect = 3e-19
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 31  agtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgt 90
           |||||| ||||||||||||||||| ||||||||||| ||||| || || |||  ||| ||
Sbjct: 215 agtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggctaagaaactatgt 274

                                                           
Query: 91  gcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
           ||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 275 gcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 322
to top
>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds
          Length = 545

 Score =  103 bits (52), Expect = 3e-19
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 31  agtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgt 90
           |||||| ||||||||||||||||| ||||||||||| ||||| || || |||  ||| ||
Sbjct: 187 agtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggctaagaaactatgt 246

                                                           
Query: 91  gcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
           ||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 247 gcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 294
to top
>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds
          Length = 510

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                       
Query: 31  agtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgt 90
           |||||| ||||||||||||||||| ||||||||||| ||||| || || |||  ||| ||
Sbjct: 158 agtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggctaagaaactatgt 217

                                                           
Query: 91  gcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
           ||  ||||||||||| |||||||||||||  ||||||||||| |||||
Sbjct: 218 gcgcgacaagacccctgagatcatgccagctatcaacaagtttttcac 265
to top
>gb|AY104072.1| Zea mays PCO110104 mRNA sequence
          Length = 727

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 89/107 (83%)
 Strand = Plus / Plus

                                                                       
Query: 32  gtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgtg 91
           ||||||||||||||||||||||| || || ||||||  ||| ||||| |||  ||  |||
Sbjct: 253 gtgcttgagaaccatgaggaggggagacgttacgccatgcatggcctaagaagctttgtg 312

                                                          
Query: 92  caggacaagacccccgagatcatgccaggaatcaacaagttcttcac 138
           || |||||||| || ||||||||||| | | | ||||||||||||||
Sbjct: 313 cacgacaagactcctgagatcatgcctgcagttaacaagttcttcac 359
to top
>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence
          Length = 567

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 110 atcatgccaggaatcaacaagttcttcac 138
           |||||||| ||||||||||||||||||||
Sbjct: 282 atcatgcctggaatcaacaagttcttcac 310
to top
>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 110   atcatgccaggaatcaacaagtt 132
             |||||||||||||||||||||||
Sbjct: 15107 atcatgccaggaatcaacaagtt 15085
to top
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 32    gtgcttgagaaccatgaggagggcag 57
             ||||||| ||||||||||||||||||
Sbjct: 39861 gtgcttgtgaaccatgaggagggcag 39836
to top
>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 32    gtgcttgagaaccatgaggagggcag 57
             ||||||| ||||||||||||||||||
Sbjct: 10605 gtgcttgtgaaccatgaggagggcag 10630
to top
>ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 mRNA, complete cds
          Length = 588

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 atcatgccaggaatcaacaagttcttcac 138
           |||||||| ||| ||||||||||||||||
Sbjct: 294 atcatgcctggactcaacaagttcttcac 322
to top
>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 110   atcatgccaggaatcaacaagttcttcac 138
             |||||||| ||| ||||||||||||||||
Sbjct: 12968 atcatgcctggactcaacaagttcttcac 12996
to top
>gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 558

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 atcatgccaggaatcaacaagttcttcac 138
           |||||||| ||| ||||||||||||||||
Sbjct: 294 atcatgcctggactcaacaagttcttcac 322
to top
>emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 551

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 atcatgccaggaatcaacaagttcttcac 138
           |||||||| ||| ||||||||||||||||
Sbjct: 276 atcatgcctggactcaacaagttcttcac 304
to top
>emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH57ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 515

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 110 atcatgccaggaatcaacaagttcttcac 138
           |||||||| ||| ||||||||||||||||
Sbjct: 240 atcatgcctggactcaacaagttcttcac 212
to top
>gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 350

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 atcatgccaggaatcaacaagttcttcac 138
           |||||||| ||| ||||||||||||||||
Sbjct: 223 atcatgcctggactcaacaagttcttcac 251
to top
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     aaactgttgtggtcaagtgc 207
               ||||||||||||||||||||
Sbjct: 1954929 aaactgttgtggtcaagtgc 1954948
to top
>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 163   ctgtctgtctgtgactcgctattagaaa 190
             |||| ||||||||||||||| |||||||
Sbjct: 18882 ctgtgtgtctgtgactcgcttttagaaa 18855
to top
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    ggcgctacgccgagcacggc 76
             ||||||||||||||||||||
Sbjct: 58276 ggcgctacgccgagcacggc 58257
to top
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    ggcgctacgccgagcacggc 76
             ||||||||||||||||||||
Sbjct: 21942 ggcgctacgccgagcacggc 21961
to top
>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative
            major fimbrial structural subunit (fimA) genes, complete
            cds
          Length = 12256

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   ggcgctacgccgagcacggc 76
            ||||||||||||||||||||
Sbjct: 4545 ggcgctacgccgagcacggc 4564


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,067,458
Number of Sequences: 3902068
Number of extensions: 2067458
Number of successful extensions: 60852
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60808
Number of HSP's gapped (non-prelim): 44
length of query: 256
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 234
effective length of database: 17,147,199,772
effective search space: 4012444746648
effective search space used: 4012444746648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top