>EMF2_ARATH (Q8L6Y4) Polycomb protein EMBRYONIC FLOWER 2|
          Length = 631

 Score =  123 bits (308), Expect = 3e-28
 Identities = 62/116 (53%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
 Frame = +3

Query: 120 DHMCRQPSTPDLSPDEQLAAEETFKLYCKPVELCNVIQKRALDNPAFLQRCLHYMIQASR 299
           + MC + S   +S +E++AAEE+   YCKPVEL N+IQ+RA+ NP FLQRCLHY I+A  
Sbjct: 19  EQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKIEAKH 78

Query: 300 KKRIQLTVSLSRGIEC--PDQNIFPLYLLLATPTSDNIPLEGHSPIYRFSRACLLT 461
           K+RIQ+TV LS  I+     Q +FPLY+LLA   S   P+  +S +YRFSRAC+LT
Sbjct: 79  KRRIQMTVFLSGAIDAGVQTQKLFPLYILLARLVSPK-PVAEYSAVYRFSRACILT 133

>VRN2_ARATH (Q8W5B1) Polycomb group protein VERNALIZATION 2|
          Length = 440

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +3

Query: 126 MCRQPSTPDLSPDEQLAAEETFKLYCKPVELCNVIQKRALDNPAFLQRCLHYMIQASRKK 305
           MCRQ      SP+E ++ +E   +YCKPV L N+   R+L NP+FL RCL+Y I A RK+
Sbjct: 1   MCRQNCRAKSSPEEVISTDENLLIYCKPVRLYNIFHLRSLGNPSFLPRCLNYKIGAKRKR 60

Query: 306 RIQLT 320
           + + T
Sbjct: 61  KSRST 65

>SYD1_SYNAS (Q2LPW5) Aspartyl-tRNA synthetase 1 (EC 6.1.1.12) (Aspartate--tRNA|
           ligase 1) (AspRS 1)
          Length = 723

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = -2

Query: 305 LFTACLYHVMKASLQESGIIKGSFLNNIAEL-------NWLAVQLEGFFGSKLLIWRQVR 147
           +F+   Y + K  LQ  G IKG  +   +E        N  A ++   FG+K + W +  
Sbjct: 333 VFSRTSYSIFKQILQRGGSIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAE 392

Query: 146 RGRLXAHVV 120
            G+L +++V
Sbjct: 393 EGKLESNIV 401

>MSH4_MOUSE (Q99MT2) MutS protein homolog 4 (mMsh4)|
          Length = 958

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
 Frame = -1

Query: 225 HCRAQLACSTT*RFLRQQAAHLETSQAWTVX---GTCGXXXXXXXXXXXIQAMG-RARDG 58
           H R  L        LRQ+AA L +S  WT       CG             AM  R+   
Sbjct: 35  HARRTLGVRKAGEMLRQEAASLSSSPRWTPSRRDAPCGRTLASASRPSTEGAMADRSSSS 94

Query: 57  ERTRAPAPALGIS 19
             + APA A G S
Sbjct: 95  SSSPAPASAPGSS 107

>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)|
          Length = 900

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = +3

Query: 204 KPVELCNVIQKRALDNPAFLQRCLHYM---IQASRKKRIQLTV-----SLSRGIECPDQN 359
           KP ++   ++ R   NP FL R L YM   +  + KKRI   V     S+++  E   QN
Sbjct: 64  KPTQIYRYLRNRHETNPIFLNRTLSYMKERMSRNNKKRISFQVNSMLESITQKSEAVSQN 123

>PLD_CORUL (Q59332) Phospholipase D precursor (EC 3.1.4.4) (Choline|
           phosphatase)
          Length = 307

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 300 KKRIQLTVSLSRGIECPDQNIFPLYLLLATPTSDNIPLEGHSPIYRFSRACLLT 461
           KK++ L +S+  GI      +FP+   +ATP S +    G+ P+Y  +   L T
Sbjct: 2   KKKVVLFLSIIMGI------LFPVGNAVATPVSHDAASTGNRPVYAIAHRVLTT 49

>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal|
           transduction protein CBL) (Proto-oncogene c-CBL)
           (Casitas B-lineage lymphoma proto-oncogene)
          Length = 913

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 142 PRLTCLQMSSLLPKKPSSC-TASQLSSAMLFKNEPLIIPLSCKD 270
           PRL  LQ  + +P   S   TAS+ +S  L K++PL IP + +D
Sbjct: 496 PRLDLLQQRAPVPASTSVLGTASKAASGSLHKDKPLPIPPTLRD 539

>SPAG5_MOUSE (Q7TME2) Sperm-associated antigen 5 (Mastrin) (Mitotic|
            spindle-associated protein p126) (MAP126)
          Length = 1165

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +3

Query: 30   TPAPAPLSVHHRAPVP*LGXXXXXXXXXXXDHMCRQPSTPDLSPDEQLAAEETFKLYCKP 209
            TP  A   V   APVP LG               +   TPDL  ++ LA   T     K 
Sbjct: 897  TPTAAVDEVPEPAPVPLLGSVKSAFTRVASMASFQPTETPDL--EKSLAEMSTVLQELK- 953

Query: 210  VELCNVIQKRALDNPAFLQR--C-LHYMIQASRKK 305
              LC+++Q+   +    LQR  C LH  +QA  ++
Sbjct: 954  -SLCSLLQESKEEATGVLQREICELHSRLQAQEEE 987


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,330,520
Number of Sequences: 219361
Number of extensions: 1442339
Number of successful extensions: 3792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3788
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)