ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdp20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009309.1| Triticum aestivum clone wlm1.pk0020.e5:fis, full ... 654 0.0
2gb|AY109126.1| Zea mays PCO083627 mRNA sequence 297 2e-77
3ref|XM_479296.1| Oryza sativa (japonica cultivar-group), mRNA 202 8e-49
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
5dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
6dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
7gb|AY109769.1| Zea mays CL6982_1 mRNA sequence 100 9e-18
8dbj|AK059466.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
9gb|AF368282.1| Oryza sativa CaMK1 (CaMK1) mRNA, complete cds 68 3e-08
10ref|NM_114913.3| Arabidopsis thaliana CRK; ATP binding / calcium... 60 8e-06
11emb|Y09418.1|ATCRK A.thaliana mRNA for CDPK-related protein kinase 60 8e-06
12gb|AF435446.1|AF435446 Arabidopsis thaliana calcium/calmodulin-d... 60 8e-06
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
14gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare str... 58 3e-05
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
17gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
18ref|NM_103846.3| Arabidopsis thaliana ATP binding / calcium ion ... 44 0.45
19gb|BT010597.1| Arabidopsis thaliana At1g49580 gene, complete cds 44 0.45
20emb|BX818516.1|CNS0AB2O Arabidopsis thaliana Full-length cDNA Co... 44 0.45
21gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Ca... 42 1.8
22gb|AF362777.2|AF362777 Branchiostoma belcheri myosin light chain... 42 1.8
23ref|XM_318912.2| Anopheles gambiae str. PEST ENSANGP00000015727 ... 42 1.8
24gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Can... 42 1.8
25ref|NM_129679.1| Arabidopsis thaliana CRK1 (CDPK-RELATED KINASE ... 40 7.0
26gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 7.0
27gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H... 40 7.0
28gb|AF435448.1| Arabidopsis thaliana calcium/calmodulin-dependent... 40 7.0
29emb|AL954219.1| Pan troglodytes chromosome 22 clone PTB-302M06 m... 40 7.0
30emb|AL033392.5|HS403M6 Human DNA sequence from clone RP3-403M6 o... 40 7.0
31emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chr... 40 7.0
32gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complet... 40 7.0
33gb|AC113376.2| Homo sapiens chromosome 5 clone RP11-262B5, compl... 40 7.0
34gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.0
35gb|AC148697.1| Macaca mulatta Major Histocompatibility Complex B... 40 7.0
36gb|AC148663.1| Macaca mulatta Major Histocompatibility Complex B... 40 7.0
37dbj|AP001732.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.0
38dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, ... 40 7.0
39emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 ... 40 7.0
40emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 m... 40 7.0
41gb|AF153351.1|AF153351 Arabidopsis thaliana CDPK-related kinase ... 40 7.0
42dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.0
43gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 7.0
44dbj|AP001037.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.0
45dbj|AP001506.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 7.0 
>gb|BT009309.1| Triticum aestivum clone wlm1.pk0020.e5:fis, full insert mRNA sequence
          Length = 1498

 Score =  654 bits (330), Expect = 0.0
 Identities = 477/522 (91%), Gaps = 18/522 (3%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
            ||||||||| |||||||| ||||| || || || || |||||||||||||| ||||||||
Sbjct: 818  gtacagaaaattggattttgaagagttcgccgcttccgccatcagcgtataccagatgga 877

                                                                        
Query: 61   agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
            ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 878  agctctggagacctgggaacagcatgctcggcgcgcgtacgagctgttcgacaaggaggg 937

                                                                        
Query: 121  caaccggcctatcgtgatcgaagaacttgcgtcggaacttggccttggcccgtcggtgcc 180
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 938  caaccggcctatcgtgatcgaagaacttgcgtcggaactcggcctcggcccgtcggtgcc 997

                                                                        
Query: 181  cctccacgtcgtcctccaggactggatcaggcacgccgacgggaagcttagcttcctcgg 240
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 998  cctccacgtcgtcctccaggactggatcaggcacgccgacgggaagctcagcttcctcgg 1057

                                                                        
Query: 241  gttcataaagctcttgcacggagtctcttcccggtcgatcccgaaagcctgaggcgcaaa 300
            ||||||||||||||||||||| || |||||||||||||||||||||||||||| ||  ||
Sbjct: 1058 gttcataaagctcttgcacggtgtttcttcccggtcgatcccgaaagcctgagacg-gaa 1116

                                                                        
Query: 301  acaagcattattattcttgcatcaattcaaacctaggagatgactgatggctaagccacc 360
            |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||
Sbjct: 1117 acaagcattattattcttgca-----tcaaacctaggagatgactgatggctaagccacc 1171

                                                                        
Query: 361  gccaatctctcgctggtgtctgtgtgcgtggacgacgactgtttgaggtggctggaggag 420
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1172 gccaatctctcgctggtgtctgtgtgcgtggacgacaactgtttgaggtggctggaggag 1231

                                                                        
Query: 421  gatgacgatggcttgcgac--cgaccgggatggaagagaagtcagccaacagtctttgtg 478
               ||||||||||||||||  ||||||  | ||||||||    ||||  |||||||||||
Sbjct: 1232 ---gacgatggcttgcgaccgcgaccgtaacggaagaga----agccggcagtctttgtg 1284

                                                      
Query: 479  taagaggt---aataagatgaaaagaaggttgttgcttgatg 517
            ||||||||   || ||||| | ||||||||||||||||||||
Sbjct: 1285 taagaggtaagaagaagataagaagaaggttgttgcttgatg 1326
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>gb|AY109126.1| Zea mays PCO083627 mRNA sequence
          Length = 1112

 Score =  297 bits (150), Expect = 2e-77
 Identities = 249/282 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
            |||||| ||| |||| |||||||| || || || || ||||||||||| || ||||||||
Sbjct: 757  gtacaggaagctggacttcgaagagttcgccgcttccgccatcagcgtttaccagatgga 816

                                                                        
Query: 61   agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
            |||| ||||||| ||||| |||||||| ||||| || |||||||||||||||||||| ||
Sbjct: 817  agccttggagacgtgggagcagcacgcgcggcgtgcgtacgagctgttcgacaaggaagg 876

                                                                        
Query: 121  caaccggcctatcgtgatcgaagaacttgcgtcggaacttggccttggcccgtcggtgcc 180
             |||||||| |||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 877  aaaccggcccatcgtgatcgaagagcttgcatcggaactcgggcttggcccgtcggtgcc 936

                                                                        
Query: 181  cctccacgtcgtcctccaggactggatcaggcacgccgacgggaagcttagcttcctcgg 240
             |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct: 937  tctccacgttgtcctccaggactggatccggcacgccgacgggaagctgagcttcctggg 996

                                                      
Query: 241  gttcataaagctcttgcacggagtctcttcccggtcgatccc 282
            ||||||||||||||||||||| || || || || ||||||||
Sbjct: 997  gttcataaagctcttgcacggggtgtcgtcgcgctcgatccc 1038
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>ref|XM_479296.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1785

 Score =  202 bits (102), Expect = 8e-49
 Identities = 243/290 (83%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
            ||||||||| |||||||| ||||| || || || |||||| ||||||| |||||||||||
Sbjct: 1494 gtacagaaaattggattttgaagagttcgctgcttctgccgtcagcgtttatcagatgga 1553

                                                                        
Query: 61   agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
            |||  |||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 1554 agctttggaaacatgggagcagcacgcacggcgtgcatacgagctattcgataaggaggg 1613

                                                                        
Query: 121  caaccggcctatcgtgatcgaagaacttgcgtcggaacttggccttggcccgtcggtgcc 180
            |||||| ||||| || || || || ||||| ||||||||||| ||||| || || || ||
Sbjct: 1614 caaccgacctattgtaattgaggagcttgcatcggaacttggacttggtccatcagtccc 1673

                                                                        
Query: 181  cctccacgtcgtcctccaggactggatcaggcacgccgacgggaagcttagcttcctcgg 240
             || || || || ||||| || |||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 1674 tcttcatgttgtactccaagattggatcagacacgccgatgggaagcttagtttccttgg 1733

                                                              
Query: 241  gttcataaagctcttgcacggagtctcttcccggtcgatcccgaaagcct 290
             ||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 1734 attcattaaacttttgcacggagtttcttcgcgatcgatcccgaaagcct 1783
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 9e-24
 Identities = 114/132 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1        gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
                ||||||||| |||||||| ||||| || || || |||||| ||||||| |||||||||||
Sbjct: 26630266 gtacagaaaattggattttgaagagttcgctgcttctgccgtcagcgtttatcagatgga 26630207

                                                                            
Query: 61       agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
                |||  |||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 26630206 agctttggaaacatgggagcagcacgcacggcgtgcatacgagctattcgataaggaggg 26630147

                            
Query: 121      caaccggcctat 132
                |||||| |||||
Sbjct: 26630146 caaccgacctat 26630135



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                            
Query: 194      ctccaggactggatcaggcacgccgacgggaagcttagcttcctcgggttcataaagctc 253
                ||||| || |||||||| |||||||| ||||||||||| ||||| || ||||| || || 
Sbjct: 26629999 ctccaagattggatcagacacgccgatgggaagcttagtttccttggattcattaaactt 26629940

                                                     
Query: 254      ttgcacggagtctcttcccggtcgatcccgaaagcct 290
                ||||||||||| ||||| || ||||||||||||||||
Sbjct: 26629939 ttgcacggagtttcttcgcgatcgatcccgaaagcct 26629903
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1340_C08
          Length = 192167

 Score =  119 bits (60), Expect = 9e-24
 Identities = 114/132 (86%)
 Strand = Plus / Minus

                                                                          
Query: 1      gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
              ||||||||| |||||||| ||||| || || || |||||| ||||||| |||||||||||
Sbjct: 175537 gtacagaaaattggattttgaagagttcgctgcttctgccgtcagcgtttatcagatgga 175478

                                                                          
Query: 61     agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
              |||  |||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 175477 agctttggaaacatgggagcagcacgcacggcgtgcatacgagctattcgataaggaggg 175418

                          
Query: 121    caaccggcctat 132
              |||||| |||||
Sbjct: 175417 caaccgacctat 175406



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                          
Query: 194    ctccaggactggatcaggcacgccgacgggaagcttagcttcctcgggttcataaagctc 253
              ||||| || |||||||| |||||||| ||||||||||| ||||| || ||||| || || 
Sbjct: 175270 ctccaagattggatcagacacgccgatgggaagcttagtttccttggattcattaaactt 175211

                                                   
Query: 254    ttgcacggagtctcttcccggtcgatcccgaaagcct 290
              ||||||||||| ||||| || ||||||||||||||||
Sbjct: 175210 ttgcacggagtttcttcgcgatcgatcccgaaagcct 175174
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>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0524G08
          Length = 146690

 Score =  119 bits (60), Expect = 9e-24
 Identities = 114/132 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
             ||||||||| |||||||| ||||| || || || |||||| ||||||| |||||||||||
Sbjct: 47870 gtacagaaaattggattttgaagagttcgctgcttctgccgtcagcgtttatcagatgga 47811

                                                                         
Query: 61    agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
             |||  |||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 47810 agctttggaaacatgggagcagcacgcacggcgtgcatacgagctattcgataaggaggg 47751

                         
Query: 121   caaccggcctat 132
             |||||| |||||
Sbjct: 47750 caaccgacctat 47739



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                         
Query: 194   ctccaggactggatcaggcacgccgacgggaagcttagcttcctcgggttcataaagctc 253
             ||||| || |||||||| |||||||| ||||||||||| ||||| || ||||| || || 
Sbjct: 47603 ctccaagattggatcagacacgccgatgggaagcttagtttccttggattcattaaactt 47544

                                                  
Query: 254   ttgcacggagtctcttcccggtcgatcccgaaagcct 290
             ||||||||||| ||||| || ||||||||||||||||
Sbjct: 47543 ttgcacggagtttcttcgcgatcgatcccgaaagcct 47507
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>gb|AY109769.1| Zea mays CL6982_1 mRNA sequence
          Length = 1446

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                        
Query: 38   gccatcagcgtatatcagatggaagccctggagacctgggaacagcacgctcggcgcgca 97
            ||||| || |||||||| ||||||| |||||||||||||||| | || ||||  |  |||
Sbjct: 978  gccattagtgtatatcaaatggaaggcctggagacctgggaagaacatgctcaacaagca 1037

                                                                        
Query: 98   tacgagctgttcgacaaggagggcaaccggcctatcgtgatcgaagaacttgcgtcggaa 157
            || ||  |||| ||||||||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 1038 tatgaattgtttgacaaggagggcaaccgaccaattgtgattgaagaacttgcatcggaa 1097

                          
Query: 158  cttggccttggccc 171
            ||||| ||||||||
Sbjct: 1098 cttggacttggccc 1111
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>dbj|AK059466.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D08, full
           insert sequence
          Length = 1149

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 212/270 (78%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
           |||||||||||||||||| || || ||| | ||  |||||||||| || || ||||||||
Sbjct: 579 gtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatgga 638

                                                                       
Query: 61  agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
           ||   |||| ||||||||||| || || ||||  || |||||| | || || ||||||||
Sbjct: 639 aggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggaggg 698

                                                                       
Query: 121 caaccggcctatcgtgatcgaagaacttgcgtcggaacttggccttggcccgtcggtgcc 180
            ||||| || || |||||||| || || || |||||||||||  | || || ||||| ||
Sbjct: 699 taaccgaccaattgtgatcgacgagctcgcatcggaacttggattgggtccttcggttcc 758

                                                                       
Query: 181 cctccacgtcgtcctccaggactggatcaggcacgccgacgggaagcttagcttcctcgg 240
           ||| || || || ||||| || |||||||| ||  | || || || || |||||||| ||
Sbjct: 759 cctacatgttgttctccaagattggatcagacatcctgatggaaaactcagcttccttgg 818

                                         
Query: 241 gttcataaagctcttgcacggagtctcttc 270
           |||||| || || ||||| ||||| |||||
Sbjct: 819 gttcatgaaactattgcatggagtttcttc 848
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>gb|AF368282.1| Oryza sativa CaMK1 (CaMK1) mRNA, complete cds
          Length = 2800

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 211/270 (78%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
            |||||||||||||||||| || || ||| | ||  |||||||||| || || ||||||||
Sbjct: 1968 gtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatgga 2027

                                                                        
Query: 61   agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
            ||   |||| ||||||||||| || || ||||  || |||||| | || || ||||||||
Sbjct: 2028 aggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggaggg 2087

                                                                        
Query: 121  caaccggcctatcgtgatcgaagaacttgcgtcggaacttggccttggcccgtcggtgcc 180
             ||||| || || |||||||| || || || |||| ||||||  | || || ||||| ||
Sbjct: 2088 taaccgaccaattgtgatcgacgagctcgcatcgggacttggattgggtccttcggttcc 2147

                                                                        
Query: 181  cctccacgtcgtcctccaggactggatcaggcacgccgacgggaagcttagcttcctcgg 240
            ||| || || || ||||| || |||||||| ||  | || || || || |||||||| ||
Sbjct: 2148 cctacatgttgttctccaagattggatcagacatcctgatggaaaactcagcttccttgg 2207

                                          
Query: 241  gttcataaagctcttgcacggagtctcttc 270
            |||||| || || ||||| ||||| |||||
Sbjct: 2208 gttcatgaaactattgcatggagtttcttc 2237
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>ref|NM_114913.3| Arabidopsis thaliana CRK; ATP binding / calcium ion binding /
            calcium-dependent protein serine/threonine phosphatase/
            kinase/ protein kinase/ protei> AT3G50530 (CRK) mRNA,
            complete cds
          Length = 2384

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                        
Query: 74   tgggaacagcacgctcggcgcgcatacgagctgttcgacaaggagggcaaccggcctatc 133
            |||||||| ||||||||  | || || ||||| ||||| ||||| || ||||| || |||
Sbjct: 1880 tgggaacaacacgctcgttgtgcttatgagcttttcgaaaaggaagggaaccgaccaatc 1939

                                                  
Query: 134  gtgatcgaagaacttgcgtcggaacttggccttggccc 171
             ||||||| ||||| || ||||||||||| ||||||||
Sbjct: 1940 atgatcgatgaactcgcttcggaacttggtcttggccc 1977
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>emb|Y09418.1|ATCRK A.thaliana mRNA for CDPK-related protein kinase
          Length = 2267

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                        
Query: 74   tgggaacagcacgctcggcgcgcatacgagctgttcgacaaggagggcaaccggcctatc 133
            |||||||| ||||||||  | || || ||||| ||||| ||||| || ||||| || |||
Sbjct: 1748 tgggaacaacacgctcgttgtgcttatgagcttttcgaaaaggaagggaaccgaccaatc 1807

                                                  
Query: 134  gtgatcgaagaacttgcgtcggaacttggccttggccc 171
             ||||||| ||||| || ||||||||||| ||||||||
Sbjct: 1808 atgatcgatgaactcgcttcggaacttggtcttggccc 1845
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>gb|AF435446.1|AF435446 Arabidopsis thaliana calcium/calmodulin-dependent protein kinase
            CaMK1 mRNA, complete cds
          Length = 2271

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                        
Query: 74   tgggaacagcacgctcggcgcgcatacgagctgttcgacaaggagggcaaccggcctatc 133
            |||||||| ||||||||  | || || ||||| ||||| ||||| || ||||| || |||
Sbjct: 1813 tgggaacaacacgctcgttgtgcttatgagcttttcgaaaaggaagggaaccgaccaatc 1872

                                                  
Query: 134  gtgatcgaagaacttgcgtcggaacttggccttggccc 171
             ||||||| ||||| || ||||||||||| ||||||||
Sbjct: 1873 atgatcgatgaactcgcttcggaacttggtcttggccc 1910
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 113/141 (80%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
                |||||||||||||||||| || || ||| | ||  |||||||||| || || ||||||||
Sbjct: 14160737 gtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatgga 14160796

                                                                            
Query: 61       agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
                ||   |||| ||||||||||| || || ||||  || |||||| | || || ||||||||
Sbjct: 14160797 aggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggaggg 14160856

                                     
Query: 121      caaccggcctatcgtgatcga 141
                 ||||| || || ||||||||
Sbjct: 14160857 taaccgaccaattgtgatcga 14160877
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>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0012F18, from chromosome 3, complete sequence
          Length = 122903

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 113/141 (80%)
 Strand = Plus / Plus

                                                                         
Query: 1     gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
             |||||||||||||||||| || || ||| | ||  |||||||||| || || ||||||||
Sbjct: 35028 gtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatgga 35087

                                                                         
Query: 61    agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
             ||   |||| ||||||||||| || || ||||  || |||||| | || || ||||||||
Sbjct: 35088 aggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggaggg 35147

                                  
Query: 121   caaccggcctatcgtgatcga 141
              ||||| || || ||||||||
Sbjct: 35148 taaccgaccaattgtgatcga 35168
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 113/141 (80%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
                |||||||||||||||||| || ||  || | ||  ||||||||||||| || ||||||||
Sbjct: 28805588 gtacagaaagttggattttgaggagatttctgctgctgccatcagcgtttaccagatgga 28805647

                                                                            
Query: 61       agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
                ||   |||| ||||||||||| || || ||||  || |||||| | || || ||||||||
Sbjct: 28805648 aggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggaggg 28805707

                                     
Query: 121      caaccggcctatcgtgatcga 141
                 ||||| || || ||||||||
Sbjct: 28805708 taaccgaccaattgtgatcga 28805728
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 113/141 (80%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
                |||||||||||||||||| || || ||| | ||  |||||||||| || || ||||||||
Sbjct: 14155712 gtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatgga 14155771

                                                                            
Query: 61       agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
                ||   |||| ||||||||||| || || ||||  || |||||| | || || ||||||||
Sbjct: 14155772 aggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggaggg 14155831

                                     
Query: 121      caaccggcctatcgtgatcga 141
                 ||||| || || ||||||||
Sbjct: 14155832 taaccgaccaattgtgatcga 14155852
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>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0035N21, complete sequence
          Length = 128331

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 113/141 (80%)
 Strand = Plus / Minus

                                                                         
Query: 1     gtacagaaagttggatttcgaagaatttgcggcctctgccatcagcgtatatcagatgga 60
             |||||||||||||||||| || ||  || | ||  ||||||||||||| || ||||||||
Sbjct: 67879 gtacagaaagttggattttgaggagatttctgctgctgccatcagcgtttaccagatgga 67820

                                                                         
Query: 61    agccctggagacctgggaacagcacgctcggcgcgcatacgagctgttcgacaaggaggg 120
             ||   |||| ||||||||||| || || ||||  || |||||| | || || ||||||||
Sbjct: 67819 aggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggaggg 67760

                                  
Query: 121   caaccggcctatcgtgatcga 141
              ||||| || || ||||||||
Sbjct: 67759 taaccgaccaattgtgatcga 67739
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>ref|NM_103846.3| Arabidopsis thaliana ATP binding / calcium ion binding /
            calcium-dependent protein serine/threonine phosphatase/
            kinase/ protein kinase/ protein ser> AT1G49580 mRNA,
            complete cds
          Length = 2209

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 101  gagctgttcgacaaggagggcaaccggcctatcgtgatcgaagaacttgcgtcggaactt 160
            ||||| ||||||||| | || |||||  |||| || |||||||||||||| || ||||||
Sbjct: 1777 gagcttttcgacaagaatggaaaccgagctattgtcatcgaagaacttgcctctgaactt 1836

              
Query: 161  gg 162
            ||
Sbjct: 1837 gg 1838
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>gb|BT010597.1| Arabidopsis thaliana At1g49580 gene, complete cds
          Length = 1821

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 101  gagctgttcgacaaggagggcaaccggcctatcgtgatcgaagaacttgcgtcggaactt 160
            ||||| ||||||||| | || |||||  |||| || |||||||||||||| || ||||||
Sbjct: 1624 gagcttttcgacaagaatggaaaccgagctattgtcatcgaagaacttgcctctgaactt 1683

              
Query: 161  gg 162
            ||
Sbjct: 1684 gg 1685
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>emb|BX818516.1|CNS0AB2O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 648

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 101 gagctgttcgacaaggagggcaaccggcctatcgtgatcgaagaacttgcgtcggaactt 160
           ||||| ||||||||| | || |||||  |||| || |||||||||||||| || ||||||
Sbjct: 216 gagcttttcgacaagaatggaaaccgagctattgtcatcgaagaacttgcctctgaactt 275

             
Query: 161 gg 162
           ||
Sbjct: 276 gg 277
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>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210923

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 58     ggaagccctggagacctggga 78
              |||||||||||||||||||||
Sbjct: 124034 ggaagccctggagacctggga 124014
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>gb|AF362777.2|AF362777 Branchiostoma belcheri myosin light chain alkali mRNA, complete cds
          Length = 621

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 102 agctgttcgacaaggagggca 122
           |||||||||||||||||||||
Sbjct: 315 agctgttcgacaaggagggca 335
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>ref|XM_318912.2| Anopheles gambiae str. PEST ENSANGP00000015727
           (ENSANGG00000013238), partial mRNA
          Length = 1476

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 411 gctggaggaggatgacgatgg 431
           |||||||||||||||||||||
Sbjct: 150 gctggaggaggatgacgatgg 170
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>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 229681

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    ggaagccctggagacctggga 78
             |||||||||||||||||||||
Sbjct: 23696 ggaagccctggagacctggga 23676
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>ref|NM_129679.1| Arabidopsis thaliana CRK1 (CDPK-RELATED KINASE 1); ATP binding /
            calcium ion binding / calcium-dependent protein
            serine/threonine phosphatase/ kinas> AT2G41140 (CRK1)
            mRNA, complete cds
          Length = 2148

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   agcgtatatcagatggaagccctggagacctgggaacagcacgctcggcgcgcatacgag 103
            ||||| |||||| | |||||  ||||||| ||||| || || || ||||| || ||||||
Sbjct: 1588 agcgtttatcagctcgaagcaatggagacatgggagcaacatgcacggcgtgcttacgag 1647

                                                                    
Query: 104  ctgttcgacaaggagggcaaccggcctatcgtgatcgaagaacttgcgtcggaact 159
             |||| || || || || ||  |||| ||| |||| ||||||||||| ||||||||
Sbjct: 1648 ttgtttgagaaagacgggaataggcccatcatgattgaagaacttgcatcggaact 1703
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 411     gctggaggaggatgacgatg 430
               ||||||||||||||||||||
Sbjct: 1699514 gctggaggaggatgacgatg 1699495
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>gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H100), complete
             sequence
          Length = 110804

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   acaagcattattattcttgc 320
             ||||||||||||||||||||
Sbjct: 25747 acaagcattattattcttgc 25766
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>gb|AF435448.1| Arabidopsis thaliana calcium/calmodulin-dependent protein kinase
            CaMK3 mRNA, complete cds
          Length = 2102

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   agcgtatatcagatggaagccctggagacctgggaacagcacgctcggcgcgcatacgag 103
            ||||| |||||| | |||||  ||||||| ||||| || || || ||||| || ||||||
Sbjct: 1588 agcgtttatcagctcgaagcaatggagacatgggagcaacatgcacggcgtgcttacgag 1647

                                                                    
Query: 104  ctgttcgacaaggagggcaaccggcctatcgtgatcgaagaacttgcgtcggaact 159
             |||| || || || || ||  |||| ||| |||| ||||||||||| ||||||||
Sbjct: 1648 ttgtttgagaaagacgggaataggcccatcatgattgaagaacttgcatcggaact 1703
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>emb|AL954219.1| Pan troglodytes chromosome 22 clone PTB-302M06 map q21.2, complete
              sequence
          Length = 128963

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    ttattattcttgcatcaatt 327
              ||||||||||||||||||||
Sbjct: 122018 ttattattcttgcatcaatt 121999
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>emb|AL033392.5|HS403M6 Human DNA sequence from clone RP3-403M6 on chromosome 6q24.1-25.3
             Contains part of the AKAP12 gene for A kinase (PRKA)
             anchor protein (gravin) 12, complete sequence
          Length = 86329

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   aacaagcattattattcttg 319
             ||||||||||||||||||||
Sbjct: 10720 aacaagcattattattcttg 10701
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>emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chromosome 10 Contains a
              pseudogene similar to part of solute carrier family 25,
              (mitochondrial carrier), member 18 (SLC25A18), the GPR10
              gene for G protein-coupled receptor 10 (GR3, PrRPR), a
              translocase of outer mitochondrial membrane 22 homolog
              (yeast) (TOM22) (TOMM22) pseudogene and one CpG island,
              complete sequence
          Length = 156604

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    gctggaggaggatgacgatg 430
              ||||||||||||||||||||
Sbjct: 127999 gctggaggaggatgacgatg 128018
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>gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complete sequence
          Length = 232613

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 301  acaagcattattattcttgc 320
            ||||||||||||||||||||
Sbjct: 5353 acaagcattattattcttgc 5334
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>gb|AC113376.2| Homo sapiens chromosome 5 clone RP11-262B5, complete sequence
          Length = 161498

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   acaagcattattattcttgc 320
             ||||||||||||||||||||
Sbjct: 51671 acaagcattattattcttgc 51652
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      agatggaagccctggagacc 73
               ||||||||||||||||||||
Sbjct: 2397837 agatggaagccctggagacc 2397818
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>gb|AC148697.1| Macaca mulatta Major Histocompatibility Complex BAC MMU248N17, complete
             sequence
          Length = 167487

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gcaaaacaagcattattatt 315
             ||||||||||||||||||||
Sbjct: 73649 gcaaaacaagcattattatt 73668
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>gb|AC148663.1| Macaca mulatta Major Histocompatibility Complex BAC MMU012K22, complete
             sequence
          Length = 174897

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gcaaaacaagcattattatt 315
             ||||||||||||||||||||
Sbjct: 27928 gcaaaacaagcattattatt 27947
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>dbj|AP001732.1| Homo sapiens genomic DNA, chromosome 21q, section 76/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   ttattattcttgcatcaatt 327
             ||||||||||||||||||||
Sbjct: 84306 ttattattcttgcatcaatt 84287
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>dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, map 22, complete
             sequences
          Length = 171187

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   agaagtcagccaacagtctt 474
             ||||||||||||||||||||
Sbjct: 96815 agaagtcagccaacagtctt 96834
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>emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 map q21.2, complete
             sequence
          Length = 169077

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   ttattattcttgcatcaatt 327
             ||||||||||||||||||||
Sbjct: 27767 ttattattcttgcatcaatt 27748
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>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete
             sequence
          Length = 241304

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   ttattattcttgcatcaatt 327
             ||||||||||||||||||||
Sbjct: 29177 ttattattcttgcatcaatt 29158
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>gb|AF153351.1|AF153351 Arabidopsis thaliana CDPK-related kinase 1 (CRK1) mRNA, complete cds
          Length = 2148

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 92/116 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   agcgtatatcagatggaagccctggagacctgggaacagcacgctcggcgcgcatacgag 103
            ||||| |||||| | |||||  ||||||| ||||| || || || ||||| || ||||||
Sbjct: 1588 agcgtttatcagctcgaagcaatggagacatgggagcaacatgcacggcgtgcttacgag 1647

                                                                    
Query: 104  ctgttcgacaaggagggcaaccggcctatcgtgatcgaagaacttgcgtcggaact 159
             |||| || || || || ||  |||| ||| |||| ||||||||||| ||||||||
Sbjct: 1648 ttgtttgagaaagacgggaataggcccatcatgattgaagaacttgcatcggaact 1703
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>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 455    agaagtcagccaacagtctt 474
              ||||||||||||||||||||
Sbjct: 170665 agaagtcagccaacagtctt 170684
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     cggcgcgcatacgagctgttcgac 112
              |||||||||| |||||||||||||
Sbjct: 863697 cggcgcgcattcgagctgttcgac 863674
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>dbj|AP001037.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2042G5, ERG-ETS2
             region, complete sequence
          Length = 165644

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   ttattattcttgcatcaatt 327
             ||||||||||||||||||||
Sbjct: 71187 ttattattcttgcatcaatt 71168
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>dbj|AP001506.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B821M7,
            LL56-APP region, complete sequence
          Length = 28074

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 455  agaagtcagccaacagtctt 474
            ||||||||||||||||||||
Sbjct: 8808 agaagtcagccaacagtctt 8827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,079,940
Number of Sequences: 3902068
Number of extensions: 4079940
Number of successful extensions: 76661
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76368
Number of HSP's gapped (non-prelim): 286
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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