ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdn07 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 73.9 bits (180), Expect = 3e-13 Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 5/100 (5%) Frame = +2 Query: 284 AFYLPGTFMHTYEAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAENLGEVLM 463 AFY+PG + + + K LTS T+LP+ YYSLP+C+P++ + AENLGEVL Sbjct: 6 AFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSK-ITYKAENLGEVLR 64 Query: 464 GDQIDNSPYHFHVNTNESL-YLCTTD----PLTKEQAELL 568 GD+I N+P+ +N+ + LC+ LT EQ+ L+ Sbjct: 65 GDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQSRLV 104
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 67.4 bits (163), Expect = 3e-11 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 7/100 (7%) Frame = +2 Query: 284 AFYLPGTFMHTYEAGET-------IAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAE 442 AFYLPG + A E I VN L S+E+ LP+ Y + +C+ +EG K+ +E Sbjct: 35 AFYLPGLAPVNFCAEEKSNECKADIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPSE 93 Query: 443 NLGEVLMGDQIDNSPYHFHVNTNESLYLCTTDPLTKEQAE 562 NLG+VL G++I+ SPY F N E+ L T E+AE Sbjct: 94 NLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYNTEKAE 133
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 65.9 bits (159), Expect = 8e-11 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 8/101 (7%) Frame = +2 Query: 284 AFYLPGTFMHTY--------EAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSA 439 AFYLPG + E I VN L S+E+ LP+ Y + +C+ +EG K+ + Sbjct: 35 AFYLPGLAPVNFCTEEKKSNECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPS 93 Query: 440 ENLGEVLMGDQIDNSPYHFHVNTNESLYLCTTDPLTKEQAE 562 ENLG+VL G++I+ SPY F N E+ L T E+AE Sbjct: 94 ENLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAE 134
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 65.9 bits (159), Expect = 8e-11 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 8/101 (7%) Frame = +2 Query: 284 AFYLPGTFMHTY--------EAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSA 439 AFYLPG + E I VN L S+E+ LP+ Y + +C+ +EG K+ + Sbjct: 35 AFYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPS 93 Query: 440 ENLGEVLMGDQIDNSPYHFHVNTNESLYLCTTDPLTKEQAE 562 ENLG+VL G++I+ SPY F N E+ L T E+AE Sbjct: 94 ENLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYHTEKAE 134
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 8/100 (8%) Frame = +2 Query: 287 FYLPGTFMHTY--------EAGETIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAE 442 FYLPG + E I VN L S+E+ LP+ Y + +C+ +EG K+ +E Sbjct: 36 FYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEG-KRPSE 94 Query: 443 NLGEVLMGDQIDNSPYHFHVNTNESLYLCTTDPLTKEQAE 562 NLG+VL G++I+ SPY F N E+ L T E+AE Sbjct: 95 NLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAE 134
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 21/105 (20%) Frame = +2 Query: 284 AFYLPGTFMHTYEAGETIAAKVNSLT--------------------SIETELPFSYYSLP 403 AFYLPG TY + I VN LT + + Y Sbjct: 22 AFYLPGVAPTTYRENDNIPLLVNHLTPSMNYQHKDEDGNNVSGDKENFLYSYDYYYNRFH 81 Query: 404 YCKPTEGVKKSAENLGEVLMGDQIDNSPYHFH-VNTNESLYLCTT 535 +C+P E V+K E+LG V+ GD+I NSP+ + + E LC T Sbjct: 82 FCQP-EKVEKQPESLGSVIFGDRIYNSPFQLNMLQEKECESLCKT 125
>YEU3_YEAST (P40071) Hypothetical protein YER113C precursor| Length = 706 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +2 Query: 317 YEAGETIAAKVNSLTSIETELPFSYYSLPY-CKPTEGVKKSAENLGEVLMGDQIDNSPYH 493 Y G+ + VN + S T+LP++YY LP+ C PT K +L E++ GD+ S Y Sbjct: 57 YRKGDPLELIVNKVESDLTQLPYAYYDLPFTCPPTMHKKPLHLSLNEIIRGDRKWESDYK 116 Query: 494 FHVNTNESLYLCTTDPLTKEQAELL 568 + TKE + L Sbjct: 117 LKFGEDNPCETLCARKTTKEGMQTL 141
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +2 Query: 317 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 493 Y+AG+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 494 FHVNTNESLYLCTTDPLTKEQAELL 568 N + L+ Q E L Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQL 119
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +2 Query: 317 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 493 Y+AG+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 494 FHVNTNESLYLCTTDPLTKEQAELL 568 N + L+ Q E L Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQL 119
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 38.1 bits (87), Expect = 0.018 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +2 Query: 317 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 493 Y+ G+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 494 FHVNTNESLYLCTTDPLTKEQAELL 568 N + L+ Q E L Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQL 119
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 38.1 bits (87), Expect = 0.018 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +2 Query: 317 YEAGETIAAKVNSLTSIET-ELPFSYYSLPYCKPTEGVKKSAENLGEVLMGDQIDNSPYH 493 Y+ G+ + VN + + + YY LP C P E ++ + +LGEVL GD++ S Y Sbjct: 36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 494 FHVNTNESLYLCTTDPLTKEQAELL 568 N + L+ Q E L Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQL 119
>DDX21_HUMAN (Q9NR30) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucleolar RNA| helicase II) (Nucleolar RNA helicase Gu) (RH II/Gu) (Gu-alpha) (DEAD box protein 21) Length = 783 Score = 33.5 bits (75), Expect = 0.44 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = -2 Query: 331 FAGFVGVHEGAREVEGVGDGLQAQ*NDQQGSRDPPGRWHLGDHCSNRLLAGDQSRA 164 + GF G EG+R G DG + ++GSR P G+ G + SNR Q R+ Sbjct: 721 YGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGGGNKSNRSQNKGQKRS 776
>SYA_STRCO (Q9KXP9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 890 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = -2 Query: 382 GQLGLDGRERVDLG-------CDRFAGFVGVHEGAREVEGVGDGLQAQ*NDQQGSRDPPG 224 GQ+G GR RVD G C + V VH+G +V V G +AQ + R Sbjct: 511 GQIGDTGRIRVDTGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDDRRRKAIA 570 Query: 223 RWHLGDHCSNRLL 185 R H H +++ L Sbjct: 571 RAHSATHLTHQAL 583
>PPK_STAS1 (Q4A040) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid| kinase) (ATP-polyphosphate phosphotransferase) Length = 719 Score = 30.0 bits (66), Expect = 4.8 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 12/92 (13%) Frame = +2 Query: 311 HTYEAGETIAAKVNSLTSIETELPFSYYSLP----------YCKPTEGVKKSAENLGEV- 457 H I K+NSLT + L S C GV +EN+ V Sbjct: 529 HRENGNGKIIMKMNSLTDKDIILKLFEASCAGVKVQLIIRGICCLKPGVPGISENIEVVS 588 Query: 458 LMGDQIDNSP-YHFHVNTNESLYLCTTDPLTK 550 ++G +++S YHFH N ++ +YL + D +T+ Sbjct: 589 IVGRFLEHSRIYHFHNNGDDIIYLSSADAMTR 620
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 29.6 bits (65), Expect = 6.3 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +1 Query: 421 RRQEECREPRRGSHG*PDRQLAVPLPRQ--HQRVAVPLHHRPAHQG 552 R+++ P RGSHG A+PL RQ Q P RP QG Sbjct: 420 RQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQG 465
>AZI1_HUMAN (Q9UPN4) 5-azacytidine-induced protein 1 (Pre-acrosome localization| protein 1) (Centrosomal protein of 131 kDa) (Cep131 protein) Length = 1083 Score = 29.6 bits (65), Expect = 6.3 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = -3 Query: 258 RMTSREAEIHRADGILETIAATDSLQAINQELHLRSGSRGADKEEAATWARSKHGRRSRA 79 R+ + E E +A L T+ A L+ +E+H R + A KEEA + R++H + Sbjct: 1007 RLAASEEETRQAKAELATLQARQQLEL--EEVHRRVKTALARKEEAVSSLRTQHEAAVKR 1064 Query: 78 RGH 70 H Sbjct: 1065 ADH 1067
>YIF0_YEAST (P40186) Hypothetical 32.0 kDa protein in RPL34B-SYG1 intergenic| region Length = 285 Score = 29.3 bits (64), Expect = 8.2 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +2 Query: 332 TIAAKVNSLTSIETELPFSYYSLPYCKPTEGVKKSAEN 445 ++ +K+++ S+E+ PFS SL C P + VKKS E+ Sbjct: 45 SLLSKISTNPSLES--PFSSKSLLDCSPVQAVKKSLES 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,114,261 Number of Sequences: 219361 Number of extensions: 1250961 Number of successful extensions: 3856 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3721 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3846 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
