Clone Name | basdo13 |
---|---|
Clone Library Name | barley_pub |
>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene Length = 1931 Score = 454 bits (229), Expect = e-125 Identities = 232/233 (99%) Strand = Plus / Plus Query: 8 atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 1384 Query: 68 ggcctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1385 ggcctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttc 1444 Query: 128 ttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcgctattagaaactg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1445 ttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcgctattagcaactg 1504 Query: 188 ttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgcgtccat 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1505 ttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgcgtccat 1557
>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA Length = 502 Score = 454 bits (229), Expect = e-125 Identities = 232/233 (99%) Strand = Plus / Plus Query: 8 atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 atggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcac 242 Query: 68 ggcctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 ggcctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttc 302 Query: 128 ttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcgctattagaaactg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 303 ttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcgctattagcaactg 362 Query: 188 ttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgcgtccat 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 ttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgcgtccat 415
>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence Length = 792 Score = 125 bits (63), Expect = 7e-26 Identities = 105/119 (88%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| || ||||||||||||||||||||||| ||||| |||||| ||| ||| Sbjct: 365 gggagggcagccggcgtgcttgagaaccatgaggaggggaggcgttacgccatgcatggc 424 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttctt 129 |||||| || ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 425 ctcagaagctttgtgcacgacaagacccccgagatcatgccagctatcaacaagttctt 483
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct: 7602866 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 7602807 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 7602806 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttc 7602747 Query: 131 ac 132 || Sbjct: 7602746 ac 7602745
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_C11 Length = 124827 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct: 26121 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 26062 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 26061 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttc 26002 Query: 131 ac 132 || Sbjct: 26001 ac 26000
>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full insert sequence Length = 576 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct: 207 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 266 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 267 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttc 326 Query: 131 ac 132 || Sbjct: 327 ac 328
>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full insert sequence Length = 552 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct: 204 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 263 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 264 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttc 323 Query: 131 ac 132 || Sbjct: 324 ac 325
>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full insert sequence Length = 518 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct: 201 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 260 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 261 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttc 320 Query: 131 ac 132 || Sbjct: 321 ac 322
>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds Length = 545 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct: 173 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 232 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 233 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttc 292 Query: 131 ac 132 || Sbjct: 293 ac 294
>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds Length = 510 Score = 115 bits (58), Expect = 7e-23 Identities = 106/122 (86%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct: 144 gggagggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatggg 203 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| ||| |||| ||||||||||| ||||||||||||| ||||||||||| ||| Sbjct: 204 ctaagaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagtttttc 263 Query: 131 ac 132 || Sbjct: 264 ac 265
>gb|AY104072.1| Zea mays PCO110104 mRNA sequence Length = 727 Score = 83.8 bits (42), Expect = 2e-13 Identities = 102/122 (83%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggc 70 ||||||||||| || ||||||||||||||||||||||| || || |||||| ||| ||| Sbjct: 238 gggagggcagctggtgtgcttgagaaccatgaggaggggagacgttacgccatgcatggc 297 Query: 71 ctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttc 130 || ||| || ||||| |||||||| || ||||||||||| | | | |||||||||||| Sbjct: 298 ctaagaagctttgtgcacgacaagactcctgagatcatgcctgcagttaacaagttcttc 357 Query: 131 ac 132 || Sbjct: 358 ac 359
>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence Length = 567 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 104 atcatgccaggaatcaacaagttcttcac 132 |||||||| |||||||||||||||||||| Sbjct: 282 atcatgcctggaatcaacaagttcttcac 310
>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence Length = 183707 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Minus Query: 104 atcatgccaggaatcaacaagtt 126 ||||||||||||||||||||||| Sbjct: 15107 atcatgccaggaatcaacaagtt 15085
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence Length = 168677 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 26 gtgcttgagaaccatgaggagggcag 51 ||||||| |||||||||||||||||| Sbjct: 39861 gtgcttgtgaaccatgaggagggcag 39836
>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence Length = 156701 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 26 gtgcttgagaaccatgaggagggcag 51 ||||||| |||||||||||||||||| Sbjct: 10605 gtgcttgtgaaccatgaggagggcag 10630
>ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 mRNA, complete cds Length = 588 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Plus Query: 104 atcatgccaggaatcaacaagttcttcac 132 |||||||| ||| |||||||||||||||| Sbjct: 294 atcatgcctggactcaacaagttcttcac 322
>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20 Length = 103889 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Plus Query: 104 atcatgccaggaatcaacaagttcttcac 132 |||||||| ||| |||||||||||||||| Sbjct: 12968 atcatgcctggactcaacaagttcttcac 12996
>gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete cds Length = 558 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Plus Query: 104 atcatgccaggaatcaacaagttcttcac 132 |||||||| ||| |||||||||||||||| Sbjct: 294 atcatgcctggactcaacaagttcttcac 322
>emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 551 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Plus Query: 104 atcatgccaggaatcaacaagttcttcac 132 |||||||| ||| |||||||||||||||| Sbjct: 276 atcatgcctggactcaacaagttcttcac 304
>emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH57ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 515 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 atcatgccaggaatcaacaagttcttcac 132 |||||||| ||| |||||||||||||||| Sbjct: 240 atcatgcctggactcaacaagttcttcac 212
>gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete cds Length = 350 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Plus Query: 104 atcatgccaggaatcaacaagttcttcac 132 |||||||| ||| |||||||||||||||| Sbjct: 223 atcatgcctggactcaacaagttcttcac 251
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 aaactgttgtggtcaagtgc 201 |||||||||||||||||||| Sbjct: 1954929 aaactgttgtggtcaagtgc 1954948
>gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete sequence Length = 39974 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gggagggcagcaggagtgct 30 |||||||||||||||||||| Sbjct: 18341 gggagggcagcaggagtgct 18360
>ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7977.2), mRNA Length = 921 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gcagcaggagtgcttgagaa 36 |||||||||||||||||||| Sbjct: 898 gcagcaggagtgcttgagaa 917
>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence Length = 215147 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 ctgtctgtctgtgactcgctattagaaa 184 |||| ||||||||||||||| ||||||| Sbjct: 18882 ctgtgtgtctgtgactcgcttttagaaa 18855
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ggcgctacgccgagcacggc 70 |||||||||||||||||||| Sbjct: 58276 ggcgctacgccgagcacggc 58257
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ggcgctacgccgagcacggc 70 |||||||||||||||||||| Sbjct: 21942 ggcgctacgccgagcacggc 21961
>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative major fimbrial structural subunit (fimA) genes, complete cds Length = 12256 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ggcgctacgccgagcacggc 70 |||||||||||||||||||| Sbjct: 4545 ggcgctacgccgagcacggc 4564 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,160,821 Number of Sequences: 3902068 Number of extensions: 2160821 Number of successful extensions: 64996 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64946 Number of HSP's gapped (non-prelim): 50 length of query: 250 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 228 effective length of database: 17,147,199,772 effective search space: 3909561548016 effective search space used: 3909561548016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)