Clone Name | basdp18 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_190836.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2862 Score = 214 bits (108), Expect = 2e-52 Identities = 240/284 (84%) Strand = Plus / Plus Query: 51 atttcaggggaaattgaaattgaaaaggtccagactcataatgtggaatcaaggtcaaag 110 |||||||| ||| ||||||| |||||| ||||||||| ||| | ||||| ||||||||| Sbjct: 2434 atttcaggtgaacttgaaatagaaaagctccagactcgcaatattgaatctaggtcaaag 2493 Query: 111 aatctcataccggtctttgagtctcttcacacatctaggtttcaacagacaagggtgaac 170 ||||| ||||| || ||||| |||||||| ||||| |||||||||||| ||||||||| | Sbjct: 2494 aatcttataccagtatttgaatctcttcatacatccaggtttcaacagtcaagggtgagc 2553 Query: 171 acacctgatagtaacagaagtgggtttctgcagcgacataagtctggattttcagcagat 230 |||||||||||||||| | ||| || || ||||| || ||||| |||||||||| || Sbjct: 2554 acacctgatagtaacaaatatggattgcttcagcgtcaaaagtccggattttcagaggac 2613 Query: 231 ggtagactctcttccagaagcagttgtagttctttggattgcatgtctgaagtcccaaat 290 ||||||||||| | ||||||||||| ||| |||||||| ||||||||||||| ||||| | Sbjct: 2614 ggtagactctcctgcagaagcagttctagctctttggactgcatgtctgaaggcccaatt 2673 Query: 291 agttccgatgataacagtgtcggtcaatatttagtagaagatag 334 || | |||||||| || | ||||||| ||||||||||||||| Sbjct: 2674 agcactgatgataatggttttggtcaatgtttagtagaagatag 2717 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 382 ccgagcttgtaaataacactgagagcctgaacacggaggcccagctcggagttgtaaata 441 |||||||||||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||| Sbjct: 2759 ccgagcttgtaaataatactcagagccttaacacagaggcccagctcggatttgtaaata 2818 Query: 442 gcaaagacgattgtgaaga 460 |||||| ||||||||||| Sbjct: 2819 acaaagaggattgtgaaga 2837
>dbj|AK101857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O17, full insert sequence Length = 3412 Score = 214 bits (108), Expect = 2e-52 Identities = 240/284 (84%) Strand = Plus / Plus Query: 51 atttcaggggaaattgaaattgaaaaggtccagactcataatgtggaatcaaggtcaaag 110 |||||||| ||| ||||||| |||||| ||||||||| ||| | ||||| ||||||||| Sbjct: 2683 atttcaggtgaacttgaaatagaaaagctccagactcgcaatattgaatctaggtcaaag 2742 Query: 111 aatctcataccggtctttgagtctcttcacacatctaggtttcaacagacaagggtgaac 170 ||||| ||||| || ||||| |||||||| ||||| |||||||||||| ||||||||| | Sbjct: 2743 aatcttataccagtatttgaatctcttcatacatccaggtttcaacagtcaagggtgagc 2802 Query: 171 acacctgatagtaacagaagtgggtttctgcagcgacataagtctggattttcagcagat 230 |||||||||||||||| | ||| || || ||||| || ||||| |||||||||| || Sbjct: 2803 acacctgatagtaacaaatatggattgcttcagcgtcaaaagtccggattttcagaggac 2862 Query: 231 ggtagactctcttccagaagcagttgtagttctttggattgcatgtctgaagtcccaaat 290 ||||||||||| | ||||||||||| ||| |||||||| ||||||||||||| ||||| | Sbjct: 2863 ggtagactctcctgcagaagcagttctagctctttggactgcatgtctgaaggcccaatt 2922 Query: 291 agttccgatgataacagtgtcggtcaatatttagtagaagatag 334 || | |||||||| || | ||||||| ||||||||||||||| Sbjct: 2923 agcactgatgataatggttttggtcaatgtttagtagaagatag 2966 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 382 ccgagcttgtaaataacactgagagcctgaacacggaggcccagctcggagttgtaaata 441 |||||||||||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||| Sbjct: 3008 ccgagcttgtaaataatactcagagccttaacacagaggcccagctcggatttgtaaata 3067 Query: 442 gcaaagacgattgtgaaga 460 |||||| ||||||||||| Sbjct: 3068 acaaagaggattgtgaaga 3086
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 121 bits (61), Expect = 2e-24 Identities = 145/173 (83%) Strand = Plus / Minus Query: 162 agggtgaacacacctgatagtaacagaagtgggtttctgcagcgacataagtctggattt 221 ||||||| ||||||||||||||||| | ||| || || ||||| || ||||| |||||| Sbjct: 33363127 agggtgagcacacctgatagtaacaaatatggattgcttcagcgtcaaaagtccggattt 33363068 Query: 222 tcagcagatggtagactctcttccagaagcagttgtagttctttggattgcatgtctgaa 281 |||| || ||||||||||| | ||||||||||| ||| |||||||| |||||||||||| Sbjct: 33363067 tcagaggacggtagactctcctgcagaagcagttctagctctttggactgcatgtctgaa 33363008 Query: 282 gtcccaaatagttccgatgataacagtgtcggtcaatatttagtagaagatag 334 | ||||| ||| | |||||||| || | ||||||| ||||||||||||||| Sbjct: 33363007 ggcccaattagcactgatgataatggttttggtcaatgtttagtagaagatag 33362955 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 382 ccgagcttgtaaataacactgagagcctgaacacggaggcccagctcggagttgtaaata 441 |||||||||||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||| Sbjct: 33362913 ccgagcttgtaaataatactcagagccttaacacagaggcccagctcggatttgtaaata 33362854 Query: 442 gcaaagacgattgtgaaga 460 |||||| ||||||||||| Sbjct: 33362853 acaaagaggattgtgaaga 33362835 Score = 99.6 bits (50), Expect = 8e-18 Identities = 98/114 (85%) Strand = Plus / Minus Query: 51 atttcaggggaaattgaaattgaaaaggtccagactcataatgtggaatcaaggtcaaag 110 |||||||| ||| ||||||| |||||| ||||||||| ||| | ||||| ||||||||| Sbjct: 33363421 atttcaggtgaacttgaaatagaaaagctccagactcgcaatattgaatctaggtcaaag 33363362 Query: 111 aatctcataccggtctttgagtctcttcacacatctaggtttcaacagacaagg 164 ||||| ||||| || ||||| |||||||| ||||| |||||||||||| ||||| Sbjct: 33363361 aatcttataccagtatttgaatctcttcatacatccaggtttcaacagtcaagg 33363308 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 21834659 gccactgataatatttcagg 21834678
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 121 bits (61), Expect = 2e-24 Identities = 145/173 (83%) Strand = Plus / Minus Query: 162 agggtgaacacacctgatagtaacagaagtgggtttctgcagcgacataagtctggattt 221 ||||||| ||||||||||||||||| | ||| || || ||||| || ||||| |||||| Sbjct: 39293 agggtgagcacacctgatagtaacaaatatggattgcttcagcgtcaaaagtccggattt 39234 Query: 222 tcagcagatggtagactctcttccagaagcagttgtagttctttggattgcatgtctgaa 281 |||| || ||||||||||| | ||||||||||| ||| |||||||| |||||||||||| Sbjct: 39233 tcagaggacggtagactctcctgcagaagcagttctagctctttggactgcatgtctgaa 39174 Query: 282 gtcccaaatagttccgatgataacagtgtcggtcaatatttagtagaagatag 334 | ||||| ||| | |||||||| || | ||||||| ||||||||||||||| Sbjct: 39173 ggcccaattagcactgatgataatggttttggtcaatgtttagtagaagatag 39121 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 382 ccgagcttgtaaataacactgagagcctgaacacggaggcccagctcggagttgtaaata 441 |||||||||||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||| Sbjct: 39079 ccgagcttgtaaataatactcagagccttaacacagaggcccagctcggatttgtaaata 39020 Query: 442 gcaaagacgattgtgaaga 460 |||||| ||||||||||| Sbjct: 39019 acaaagaggattgtgaaga 39001 Score = 99.6 bits (50), Expect = 8e-18 Identities = 98/114 (85%) Strand = Plus / Minus Query: 51 atttcaggggaaattgaaattgaaaaggtccagactcataatgtggaatcaaggtcaaag 110 |||||||| ||| ||||||| |||||| ||||||||| ||| | ||||| ||||||||| Sbjct: 39587 atttcaggtgaacttgaaatagaaaagctccagactcgcaatattgaatctaggtcaaag 39528 Query: 111 aatctcataccggtctttgagtctcttcacacatctaggtttcaacagacaagg 164 ||||| ||||| || ||||| |||||||| ||||| |||||||||||| ||||| Sbjct: 39527 aatcttataccagtatttgaatctcttcatacatccaggtttcaacagtcaagg 39474
>gb|AY110805.1| Zea mays CL31502_1 mRNA sequence Length = 923 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 381 gccgagcttgtaaataacactgagagcctgaacacggaggcccagctcggagttgtaaat 440 ||||||||||||||||| |||| |||||| || | ||||||||||||||| |||||||| Sbjct: 351 gccgagcttgtaaataatactgggagcctcaagtcagaggcccagctcggatttgtaaat 292 Query: 441 ag 442 || Sbjct: 291 ag 290 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 198 ctgcagcgacataagtctggattttcagcagatggtagac 237 ||||||||||| || ||||| |||||| ||||||||||| Sbjct: 528 ctgcagcgacagaaatctgggatttcagaagatggtagac 489
>gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete sequence Length = 164971 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggtagactctcttccagaag 250 |||||||||||||||||||| Sbjct: 149996 ggtagactctcttccagaag 150015
>ref|XM_459012.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D13684g) partial mRNA Length = 2628 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aggggaaattgaaattgaaa 75 |||||||||||||||||||| Sbjct: 1563 aggggaaattgaaattgaaa 1544
>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence Length = 222692 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 aataagaacttgaacgttaaccac 377 |||||||||||||||| ||||||| Sbjct: 84311 aataagaacttgaacgctaaccac 84288
>emb|Z50152.1|DMTRXIII D.melanogaster DNA for trxI and trxII genes Length = 26618 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggtagactctcttccagaag 250 |||||||||||||||||||| Sbjct: 621 ggtagactctcttccagaag 640
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aggggaaattgaaattgaaa 75 |||||||||||||||||||| Sbjct: 1046817 aggggaaattgaaattgaaa 1046798
>emb|AJ229043.1| Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22, segment 3/3 Length = 288002 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 189976 gccactgataatatttcagg 189995
>ref|NM_142095.2| Drosophila melanogaster CG12207-RB, transcript variant B (CG12207), mRNA Length = 2312 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggtagactctcttccagaag 250 |||||||||||||||||||| Sbjct: 146 ggtagactctcttccagaag 127
>gb|AF015262.2|AF015262 Homo sapiens chromosome 21 clone Pac 255P7 map 21q-AML, complete sequence Length = 250598 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 98027 gccactgataatatttcagg 98008
>gb|AC016993.4|AC016993 Homo sapiens clone RP11-18J9, complete sequence Length = 172241 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ttgaaattgaaaaggtccagactc 87 |||||| ||||||||||||||||| Sbjct: 6879 ttgaaactgaaaaggtccagactc 6856
>gb|AC007904.6|AC007904 Drosophila melanogaster, chromosome 3R, region 88B-88B, BAC clone BACR01H04, complete sequence Length = 190325 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggtagactctcttccagaag 250 |||||||||||||||||||| Sbjct: 169391 ggtagactctcttccagaag 169372
>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete sequence Length = 211647 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cagaagtgggtttctgcagc 204 |||||||||||||||||||| Sbjct: 78046 cagaagtgggtttctgcagc 78065
>gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, complete sequence Length = 127025 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 354 aataagaacttgaacgttaaccaccaag 381 |||||||| ||||| ||||||||||||| Sbjct: 84270 aataagaagttgaatgttaaccaccaag 84297
>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1114B07 Length = 148060 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 63952 gccactgataatatttcagg 63971
>dbj|BS000195.1| Pan troglodytes chromosome 22 clone:PTB-014E11, map 22, complete sequences Length = 251753 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 27513 gccactgataatatttcagg 27494
>dbj|BS000194.1| Pan troglodytes chromosome 22 clone:PTB-063M23, map 22, partial sequences, complete sequence Length = 147891 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 111556 gccactgataatatttcagg 111537
>dbj|AB046473.2| Eurypharynx pelecanoides mitochondrial DNA, compete genome Length = 18978 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cgttaaccaccaagccgagc 387 |||||||||||||||||||| Sbjct: 17553 cgttaaccaccaagccgagc 17572
>emb|AL163267.2|HS21C067 Homo sapiens chromosome 21 segment HS21C067 Length = 340000 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 101 gccactgataatatttcagg 82
>gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42 of 118 of the complete sequence Length = 220679 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggtagactctcttccagaag 250 |||||||||||||||||||| Sbjct: 29124 ggtagactctcttccagaag 29105
>gb|U23446.1|DMU23446 Drosophila melanogaster trithorax gene, regulatory 5' region Length = 2927 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggtagactctcttccagaag 250 |||||||||||||||||||| Sbjct: 621 ggtagactctcttccagaag 640
>dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, section 65/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gccactgataatatttcagg 58 |||||||||||||||||||| Sbjct: 339101 gccactgataatatttcagg 339082 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,891,891 Number of Sequences: 3902068 Number of extensions: 3891891 Number of successful extensions: 69184 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69086 Number of HSP's gapped (non-prelim): 98 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)