ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdo15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SOS_DROME (P26675) Protein son of sevenless 31 2.5
2ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Atax... 30 4.2
3ARLY_ANASP (Q8YQE6) Argininosuccinate lyase (EC 4.3.2.1) (Argino... 30 5.5
4NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exch... 29 7.2

>SOS_DROME (P26675) Protein son of sevenless|
          Length = 1596

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +1

Query: 268 LEKARQSETIKFSLYKNXXXXXXXXXEWKSKRKGVGIPLDESLKKMQHRGN 420
           LE ARQ   ++F +YKN          W  K K V  P    LK M+H  N
Sbjct: 831 LELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSP--NLLKIMKHTTN 879



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>ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated) (A-T, mutated)
          Length = 3056

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 346  EWKSKRKGVGIPLDESLKKMQH 411
            +WK++RKG+ IP D+ + K+++
Sbjct: 2637 QWKTQRKGINIPADQPITKLKN 2658



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>ARLY_ANASP (Q8YQE6) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 461

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 490 ELLSFPR*NKNLFCSNKSA*FSLCFLCAASSLKIHPME-SQLPFFWISILFRYGVCRSN 317
           ELL F R  +N         F++ FLCAAS + +H    S+    W S  FR+ + + +
Sbjct: 216 ELLQFERIYENSLDGVSDRDFAIEFLCAASLIMVHLSRLSEEIILWASEEFRFVILKDS 274



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>NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4)|
           (NHE-4)
          Length = 529

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 477 FLGETRIF-FVQTKALSLAFVSSVLHLL*RFIQWNPNSLSFGFPFYLDMVYVDLILI*RK 301
           F+ ET IF +V T AL              F +W  +SLSFG    +  V   L+L+ R 
Sbjct: 308 FIAETFIFLYVGTDALD-------------FTKWKTSSLSFGGTLGVSGVITALVLLGRA 354

Query: 300 LYRFTLS 280
            + F LS
Sbjct: 355 AFVFPLS 361


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,245,878
Number of Sequences: 219361
Number of extensions: 717879
Number of successful extensions: 1355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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