ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdp11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 2.8
2gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome... 40 2.8
3gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 40 2.8
4gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 2.8
5emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete ... 40 2.8
6gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 2.8

>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  gccgaggtgcaggtcggggc 184
            ||||||||||||||||||||
Sbjct: 7363 gccgaggtgcaggtcggggc 7382



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>gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome 15, complete sequence
          Length = 177331

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    cgcttagggggctgatttgg 43
             ||||||||||||||||||||
Sbjct: 16647 cgcttagggggctgatttgg 16628



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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     gggagcgagcagtgagggag 102
              ||||||||||||||||||||
Sbjct: 412243 gggagcgagcagtgagggag 412262



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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    gccgaggtgcaggtcggggc 184
              ||||||||||||||||||||
Sbjct: 571537 gccgaggtgcaggtcggggc 571556



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>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 174    caggtcggggctcaccatgggagc 197
              |||||||| |||||||||||||||
Sbjct: 132365 caggtcggcgctcaccatgggagc 132388



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>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    cgcttagggggctgatttgg 43
             ||||||||||||||||||||
Sbjct: 17191 cgcttagggggctgatttgg 17210


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,123,989
Number of Sequences: 3902068
Number of extensions: 1123989
Number of successful extensions: 74175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74081
Number of HSP's gapped (non-prelim): 94
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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