>RTOA_DICDI (P54681) Protein rtoA (Ratio-A)|
          Length = 400

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
 Frame = +3

Query: 267 SFSSRQGSLMSQISEMGSEDLGGSSPEGAGGSRGYI-PGYPMSSGWEESSLMSENMSGMK 443
           S SS  GS  S  S  GSE   GSS  G+  S G    G   SSG   S   S + S   
Sbjct: 190 SGSSNSGSESSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNS 249

Query: 444 RPRDSSEPAQNGLAHQFSLPKTSSEMAA 527
               SS  + +G         + SE ++
Sbjct: 250 GSESSSGSSNSGSESSSGSSNSGSESSS 277

>HORN_MOUSE (Q8VHD8) Hornerin|
          Length = 2496

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 28/75 (37%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 258  GQLSFSSRQGSLMSQISEMGSEDLGGSSPEGAGGSRGYIPGY-PMSSGWEESSLMSENMS 434
            GQ S S+RQGS   Q S  GS   G SS + +G   G    Y    SG   SS  S    
Sbjct: 2291 GQTSSSTRQGSGQGQAS--GSGRYGASSGQTSGCGSGQSTRYGEQGSGSRNSSTQSR--- 2345

Query: 435  GMKRPRDSSEPAQNG 479
            G    R+SS   + G
Sbjct: 2346 GRSTSRESSTSQRYG 2360



 Score = 30.0 bits (66), Expect = 4.2
 Identities = 28/75 (37%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 258  GQLSFSSRQGSLMSQISEMGSEDLGGSSPEGAGGSRGYIPGY-PMSSGWEESSLMSENMS 434
            GQ S S+RQGS   Q S  GS   G SS + +G   G    Y    SG   SS  S    
Sbjct: 1949 GQTSSSTRQGSGQGQAS--GSGRYGASSGQTSGCGSGQSTRYGEQGSGSRNSSTQSR--- 2003

Query: 435  GMKRPRDSSEPAQNG 479
            G    R+SS   + G
Sbjct: 2004 GRSTSRESSTSQRYG 2018



 Score = 30.0 bits (66), Expect = 4.2
 Identities = 28/75 (37%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 258  GQLSFSSRQGSLMSQISEMGSEDLGGSSPEGAGGSRGYIPGY-PMSSGWEESSLMSENMS 434
            GQ S S+RQGS   Q S  GS   G SS + +G   G    Y    SG   SS  S    
Sbjct: 905  GQTSSSTRQGSGQGQAS--GSGRYGASSGQTSGCGSGQSTRYGEQGSGSRNSSTQSR--- 959

Query: 435  GMKRPRDSSEPAQNG 479
            G    R+SS   + G
Sbjct: 960  GRSTSRESSTSQRYG 974



 Score = 30.0 bits (66), Expect = 4.2
 Identities = 28/75 (37%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 258 GQLSFSSRQGSLMSQISEMGSEDLGGSSPEGAGGSRGYIPGY-PMSSGWEESSLMSENMS 434
           GQ S S+RQGS   Q S  GS   G SS + +G   G    Y    SG   SS  S    
Sbjct: 556 GQTSSSTRQGSGQGQAS--GSGRYGASSGQTSGCGSGQSTRYGEQGSGSRNSSTQSR--- 610

Query: 435 GMKRPRDSSEPAQNG 479
           G    R+SS   + G
Sbjct: 611 GRSTSRESSTSQRYG 625



 Score = 29.3 bits (64), Expect = 7.2
 Identities = 28/75 (37%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 258  GQLSFSSRQGSLMSQISEMGSEDLGGSSPEGAGGSRGYIPGY-PMSSGWEESSLMSENMS 434
            GQ S S+RQGS   Q S  GS   G SS + +G   G    Y    SG   SS  S    
Sbjct: 1601 GQTSSSTRQGSGQGQAS--GSGRYGASSGQTSGCGSGQPTRYGEQGSGSRNSSTQSR--- 1655

Query: 435  GMKRPRDSSEPAQNG 479
            G    R+SS   + G
Sbjct: 1656 GRSTSRESSTSQRCG 1670



 Score = 28.9 bits (63), Expect = 9.3
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 258  GQLSFSSRQGSLMSQISEMGSEDLGGSSPEGAGGSRGYIPGY-PMSSGWEESSLMSENMS 434
            GQ + S+RQGS   Q S  GS   G SS + +G   G    Y    SG   SS  S    
Sbjct: 2120 GQTASSTRQGSGQGQAS--GSGRCGASSGQTSGCGSGQSTRYGEQGSGSRNSSTQSR--- 2174

Query: 435  GMKRPRDSSEPAQNG 479
            G    R+SS   + G
Sbjct: 2175 GRSTSRESSTSQRYG 2189

>LGT_CAMJR (Q5HW60) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 271

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 488 VRQPVLGRLRGVPWALHPGHVLRHERRLLPPGAHGV 381
           + Q + GR+  VPW ++   VLRH  +L      G+
Sbjct: 157 LNQELFGRITNVPWGIYVDGVLRHPSQLYEAFLEGI 192

>LGT_CAMJE (Q9PI98) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 271

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 488 VRQPVLGRLRGVPWALHPGHVLRHERRLLPPGAHGV 381
           + Q + GR+  VPW ++   VLRH  +L      G+
Sbjct: 157 LNQELFGRITNVPWGIYVDGVLRHPSQLYEAFLEGI 192

>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor|
          Length = 3137

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 300  QISEMGSEDLGGSSPEGAGGSRGYIPGYPMSSG 398
            ++ + G + +GG  P+G  G RG++ GYP   G
Sbjct: 2297 EMGDDGRDGIGGPGPKGRKGERGFV-GYPGPKG 2328

>LGT_WOLSU (Q7M7S6) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 272

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 488 VRQPVLGRLRGVPWALHPGHVLRHERRLLPPGAHGV 381
           + Q ++GR+  VPW ++   VLRH  +L      G+
Sbjct: 156 LNQELIGRVTEVPWGIYVAGVLRHPSQLYEAFLEGI 191

>CDSN_MOUSE (Q7TPC1) Corneodesmosin precursor|
          Length = 561

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
 Frame = +3

Query: 258 GQLSFSSRQGSLMSQISEMGS---------------EDLGGSSPEGAGGSRGYIPGYPMS 392
           G  SFSS  GS  SQ S  GS                  GGS P G+G   G       S
Sbjct: 79  GSSSFSSHGGSSSSQGSSSGSLIYKPGTGYSQSSYSYGSGGSRPGGSGSQTGSSSSQTGS 138

Query: 393 SGWEESSLMSENMSGMKRPRDSSEPAQNG 479
           S  +  S  S + SG    +  S  +Q+G
Sbjct: 139 SSSQSGS--SGSQSGSSGSQSGSSGSQSG 165

>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 300  QISEMGSEDLGG----SSPEGAGGSRGYIPGYPMSSGWEESSLMSENMSGMKRPRDSSEP 467
            ++S  G EDL G      PE +    G +   P   G E S+    ++SG+   R+  E 
Sbjct: 940  EVSASGVEDLSGLPSGEGPETSTSGVGDLSRLPSGEGPEVSASGVGDLSGLPSGREGLET 999

Query: 468  AQNGLAHQFSLP 503
            + +G+     LP
Sbjct: 1000 STSGVEDLSGLP 1011

>GCX1_HUMAN (Q96NM4) Granulosa cell HMG box protein 1 (GCX-1)|
          Length = 488

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +3

Query: 252 LKGQLSFSSRQGSLMSQ---ISEMGSEDLGGSSPEGAGGSRGYIPGYPMSSGWEESSLMS 422
           L G+ +  +   S +SQ   IS+MG       S     GS+   P  P SS  EE S + 
Sbjct: 166 LLGRPAMLASHMSALSQSQLISQMGIRSSIAHSSPSPPGSKSATPS-PSSSTQEEESEVH 224

Query: 423 ENMSGMKRP-RDSSEPAQN 476
             +SG KRP  D  + A+N
Sbjct: 225 FKISGEKRPSADPGKKAKN 243

>NKX32_HUMAN (P78367) Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog|
           1)
          Length = 333

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 315 GSEDLGGSSPEGAGGSRGYIPGYPMSSGWEESSLMSENMSGMKRPRDSSEPAQNGLA-HQ 491
           G+ED   +SP G   + G     P   GW+  S +SE     +R  D+   +  GLA   
Sbjct: 65  GAEDSLLASPAGTRTAAGRTAESP--EGWDSDSALSEENESRRRCADARGASGAGLAGGS 122

Query: 492 FSLPKTSSEMAA 527
            SL +   E+AA
Sbjct: 123 LSLGQPVCELAA 134

>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2063

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 282 QGSLMSQISEMGSEDLGGSSPEGAGGSRGYIPGYPMSSG 398
           +G++   +++  S+D+  + P GAG S     G+PM+SG
Sbjct: 132 EGAINLALAQNRSQDVRMNGPMGAGNSVRMEAGFPMASG 170

>MAGL2_MOUSE (Q9QZ04) MAGE-like protein 2 (Protein nS7)|
          Length = 490

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 339 SPEGAGGSRGYIPGYPMSSGWEESSLMSENMSGMKRPRDSSEPAQNGLAHQFSLPKTSSE 518
           +P GA  SR Y+P     + W+     SE      R   S+   Q   ++ F  P  +SE
Sbjct: 9   APRGASASRAYVP-----TAWKNLPATSETFPATSRVFPSTSHFQPASSNAFRGPSAASE 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,872,769
Number of Sequences: 219361
Number of extensions: 926253
Number of successful extensions: 3306
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3295
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)