ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdo16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EDN3_MOUSE (P48299) Endothelin-3 precursor (ET-3) (Preproendothe... 32 0.59
2COBL7_ARATH (Q8GZ17) COBRA-like protein 7 precursor 30 3.8
3MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5) 29 5.0
4IVBI_TROCA (Q6ITB0) Carinatin precursor 28 8.6
5IVBI_PSEPO (Q6ITB1) Blackelin precursor 28 8.6

>EDN3_MOUSE (P48299) Endothelin-3 precursor (ET-3) (Preproendothelin-3) (PPET3)|
          Length = 214

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 216 LFNCQRRGDAGRQSPEQGPAQEGASQICSACWARMGLTVVTYT 344
           L  C + GD+GR S  QGP + G+ + C    A  G  +V+ T
Sbjct: 19  LVPCPQSGDSGRASVSQGPPEAGSERGCEETVAGPGERIVSPT 61



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>COBL7_ARATH (Q8GZ17) COBRA-like protein 7 precursor|
          Length = 661

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 206 RWLLCGVLIVSYVRPLQQSISSLNTSPYCSNPSPSSKAPICNAV 75
           R LL  +LIVS   PL  S S  NT+    +PSP S + +CN V
Sbjct: 10  RLLLLSLLIVSI--PLTSSQSDANTTN--PSPSPPSDSDLCNGV 49



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>MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5)|
          Length = 505

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 197 LCGVLIVSYVRPLQQSISSLNTSPYCSNPSPSSKAPICNAVCG------LSFFFFFLKNG 36
           +CG +I    RP+  S++    +  C  P P + A  C A CG      L+F       G
Sbjct: 184 ICGAII----RPVATSVAP--ETKECPPPPPETPALGCLAACGRTIQRHLAFDILRHNTG 237

Query: 35  YCLILL 18
           YC+ +L
Sbjct: 238 YCVYIL 243



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>IVBI_TROCA (Q6ITB0) Carinatin precursor|
          Length = 83

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 322 PILAQQAEQICEAPSWAGPCSGL--CLPASPRR*QLNKRQLGGCYVAFSLSRTYARC 158
           P+ ++     CE P   GPC G+      +P + Q  +   GGCY   +  +T   C
Sbjct: 21  PVSSKDRPDFCELPDDRGPCRGIFHAFYYNPDQRQCLEFIYGGCYGNANNFKTIDEC 77



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>IVBI_PSEPO (Q6ITB1) Blackelin precursor|
          Length = 83

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 322 PILAQQAEQICEAPSWAGPCSGL--CLPASPRR*QLNKRQLGGCYVAFSLSRTYARC 158
           P+ ++     CE P   GPC G+      +P + Q  +   GGCY   +  +T   C
Sbjct: 21  PVSSKDRPDFCELPDDRGPCRGIFHAFYYNPDQRQCLEFIYGGCYGNANNFKTIDEC 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,948,302
Number of Sequences: 219361
Number of extensions: 982836
Number of successful extensions: 2864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2864
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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