>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50|
          Length = 552

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEA 155
           R  RRAGATP   + P   + P ++ + S  + PA   A
Sbjct: 10  RRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPAEPRA 48

>TSH_DROME (P22265) Protein teashirt|
          Length = 954

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 48  RRAGATPSTASEPTCRTRPPRSCQES----TSSSPA 143
           R +  TPS+A+ P  R  PPRS  ES    T  SPA
Sbjct: 839 RSSPKTPSSAASPQTRLLPPRSPAESQRSVTPKSPA 874

>HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 424

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 63  TPSTASEPTCRTRPPRSCQE 122
           TP T+S PT R   PR+C+E
Sbjct: 204 TPGTSSSPTGRNPRPRACEE 223

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 45   MRRAGATPSTASEPTCRTRPPRSCQESTSSSP 140
            +++AG+ PS+ S    R RPP   Q S   SP
Sbjct: 3485 LQKAGSKPSSLSMAHGRARPPMRSQASEEESP 3516

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 45   MRRAGATPSTASEPTCRTRPPRSCQESTSSSP 140
            +++AG  PS+ S    R RPP   Q S   SP
Sbjct: 3475 LQKAGPKPSSLSMAHSRVRPPMRSQASEEESP 3506

>YLB8_CAEEL (P46582) Hypothetical protein C34E10.8|
          Length = 1024

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 39  RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEA 155
           R  + +  TPST++  +    PP+S Q  TSS   R++A
Sbjct: 579 RHAQHSPLTPSTSTSSSQLLAPPKSPQPGTSSQTFRSQA 617


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,343,665
Number of Sequences: 219361
Number of extensions: 523927
Number of successful extensions: 1857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)