ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdn06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190984.1| Oryza sativa (japonica cultivar-group), predic... 103 5e-19
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
3dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4dbj|AK101937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
5dbj|AK069400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
6gb|AY109021.1| Zea mays PCO082457 mRNA sequence 80 7e-12
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
8dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
9dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
10gb|AC132317.2| Mus musculus BAC clone RP24-241J19 from chromosom... 44 0.41
11ref|XM_809584.1| Trypanosoma cruzi strain CL Brener hypothetical... 44 0.41
12gb|AC152181.1| Mus musculus BAC clone RP24-321P19 from 15, compl... 44 0.41
13ref|NM_185585.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
14emb|BX465208.18| Zebrafish DNA sequence from clone DKEYP-91H6 in... 42 1.6
15emb|CR376753.8| Zebrafish DNA sequence from clone DKEY-182P15 in... 42 1.6
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
17dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19dbj|AK121504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
20ref|NM_188767.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
21gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
22gb|AY676928.1| Oryza sativa (indica cultivar-group) transcriptio... 40 6.3
23ref|XM_420813.1| PREDICTED: Gallus gallus similar to Probable se... 40 6.3
24ref|XM_755491.1| Ustilago maydis 521 hypothetical protein (UM044... 40 6.3
25gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ... 40 6.3
26gb|AY165512.1| Homo sapiens menage a trois 1 (CAK assembly facto... 40 6.3
27emb|AL512272.15| Human DNA sequence from clone RP11-310M21 on ch... 40 6.3
28emb|AL162431.17| Human DNA sequence from clone RP11-46A10 on chr... 40 6.3
29emb|AL034408.2|HS710L4 Human DNA sequence from clone RP4-710L4 o... 40 6.3
30emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.3
31emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.3
32emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 6.3
33dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
34tpg|BK005004.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 6.3
35dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 6.3
36dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
37dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
38emb|BX934040.1| Gallus gallus finished cDNA, clone ChEST59p14 40 6.3
39dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
40dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
41dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
42emb|AJ132011.1|HSA132011 Homo sapiens MR1P1 pseudogene, partial 40 6.3
43dbj|AK063566.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
44emb|AL160236.4|CNS01RH0 Human chromosome 14 DNA sequence BAC R-1... 40 6.3
45gb|AF073486.1|AF073486 Homo sapiens MHC class I-related protein ... 40 6.3
46gb|AC161927.11| Mus musculus chromosome 1, clone RP23-22I18, com... 40 6.3
47emb|AJ315654.1|PTR315653 Pan Troglodytes partial mr1p1 pseudogen... 40 6.3 
>ref|NM_190984.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1482

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 389 atgacaagggtcatccatgactccggagaaggcatgcagaaagatgcacttgacatggta 448
           ||||||||||||||||||||||| ||||||||||||||||| || |||||||  ||||||
Sbjct: 1   atgacaagggtcatccatgactctggagaaggcatgcagaaggaggcacttgctatggta 60

                               
Query: 449 tcatccgatgttaacttccc 468
           || || ||||||||||||||
Sbjct: 61  tcttctgatgttaacttccc 80
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Minus

                                                                            
Query: 389      atgacaagggtcatccatgactccggagaaggcatgcagaaagatgcacttgacatggta 448
                ||||||||||||||||||||||| ||||||||||||||||| || |||||||  ||||||
Sbjct: 34152314 atgacaagggtcatccatgactctggagaaggcatgcagaaggaggcacttgctatggta 34152255

                                    
Query: 449      tcatccgatgttaacttccc 468
                || || ||||||||||||||
Sbjct: 34152254 tcttctgatgttaacttccc 34152235



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 310     gacggcggcggcgtggttgc 329
               ||||||||||||||||||||
Sbjct: 8084443 gacggcggcggcgtggttgc 8084462
to top
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Minus

                                                                          
Query: 389    atgacaagggtcatccatgactccggagaaggcatgcagaaagatgcacttgacatggta 448
              ||||||||||||||||||||||| ||||||||||||||||| || |||||||  ||||||
Sbjct: 148792 atgacaagggtcatccatgactctggagaaggcatgcagaaggaggcacttgctatggta 148733

                                  
Query: 449    tcatccgatgttaacttccc 468
              || || ||||||||||||||
Sbjct: 148732 tcttctgatgttaacttccc 148713
to top
>dbj|AK101937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074F22, full
           insert sequence
          Length = 2151

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 389 atgacaagggtcatccatgactccggagaaggcatgcagaaagatgcacttgacatggta 448
           ||||||||||||||||||||||| ||||||||||||||||| || |||||||  ||||||
Sbjct: 386 atgacaagggtcatccatgactctggagaaggcatgcagaaggaggcacttgctatggta 445

                               
Query: 449 tcatccgatgttaacttccc 468
           || || ||||||||||||||
Sbjct: 446 tcttctgatgttaacttccc 465
to top
>dbj|AK069400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011I15, full
           insert sequence
          Length = 2294

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 389 atgacaagggtcatccatgactccggagaaggcatgcagaaagatgcacttgacatggta 448
           ||||||||||||||||||||||| ||||||||||||||||| || |||||||  ||||||
Sbjct: 566 atgacaagggtcatccatgactctggagaaggcatgcagaaggaggcacttgctatggta 625

                               
Query: 449 tcatccgatgttaacttccc 468
           || || ||||||||||||||
Sbjct: 626 tcttctgatgttaacttccc 645
to top
>gb|AY109021.1| Zea mays PCO082457 mRNA sequence
          Length = 685

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                       
Query: 389 atgacaagggtcatccatgactccggagaaggcatgcagaaagatgcacttgacatggta 448
           ||||||||||||||||||||||||||||| | ||||||||| || ||||||||  |||| 
Sbjct: 332 atgacaagggtcatccatgactccggagatgacatgcagaaggaggcacttgatttggtc 391

                               
Query: 449 tcatccgatgttaacttccc 468
           ||||| || ||||| |||||
Sbjct: 392 tcatctgacgttaatttccc 411
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 53       tccttcctcgcgtcgttttcttt 75
                |||||||||||||||||||||||
Sbjct: 29031061 tccttcctcgcgtcgttttcttt 29031083
to top
>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0724B10
          Length = 169143

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 53    tccttcctcgcgtcgttttcttt 75
             |||||||||||||||||||||||
Sbjct: 77226 tccttcctcgcgtcgttttcttt 77248
to top
>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1218_D07
          Length = 114511

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 53     tccttcctcgcgtcgttttcttt 75
              |||||||||||||||||||||||
Sbjct: 114119 tccttcctcgcgtcgttttcttt 114141
to top
>gb|AC132317.2| Mus musculus BAC clone RP24-241J19 from chromosome 15, complete sequence
          Length = 171980

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 36     tcttccacctttccccttccttcctc 61
              |||||| |||||||||||||||||||
Sbjct: 132260 tcttcctcctttccccttccttcctc 132235



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 37     cttccacctttccccttccttcctc 61
              ||||| |||||||||||||||||||
Sbjct: 132138 cttcctcctttccccttccttcctc 132114
to top
>ref|XM_809584.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510879.150) partial mRNA
          Length = 678

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 23  cagcacgccgtactcttccacc 44
           ||||||||||||||||||||||
Sbjct: 543 cagcacgccgtactcttccacc 522
to top
>gb|AC152181.1| Mus musculus BAC clone RP24-321P19 from 15, complete sequence
          Length = 187733

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 36  tcttccacctttccccttccttcctc 61
           |||||| |||||||||||||||||||
Sbjct: 185 tcttcctcctttccccttccttcctc 210



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 37  cttccacctttccccttccttcctc 61
           ||||| |||||||||||||||||||
Sbjct: 307 cttcctcctttccccttccttcctc 331
to top
>ref|NM_185585.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 540

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  ttccccttccttcctcgcgtc 66
           |||||||||||||||||||||
Sbjct: 246 ttccccttccttcctcgcgtc 226
to top
>emb|BX465208.18| Zebrafish DNA sequence from clone DKEYP-91H6 in linkage group 6,
             complete sequence
          Length = 187635

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 421   catgcagaaagatgcacttga 441
             |||||||||||||||||||||
Sbjct: 94120 catgcagaaagatgcacttga 94140
to top
>emb|CR376753.8| Zebrafish DNA sequence from clone DKEY-182P15 in linkage group 20,
             complete sequence
          Length = 214807

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 421   catgcagaaagatgcacttga 441
             |||||||||||||||||||||
Sbjct: 77768 catgcagaaagatgcacttga 77788
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 46      ttccccttccttcctcgcgtc 66
               |||||||||||||||||||||
Sbjct: 2944897 ttccccttccttcctcgcgtc 2944877
to top
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0046E09
          Length = 146776

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     ttccccttccttcctcgcgtc 66
              |||||||||||||||||||||
Sbjct: 105043 ttccccttccttcctcgcgtc 105023
to top
>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0702F05
          Length = 145018

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 46    ttccccttccttcctcgcgtc 66
             |||||||||||||||||||||
Sbjct: 32846 ttccccttccttcctcgcgtc 32826
to top
>dbj|AK121504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022L20, full
           insert sequence
          Length = 690

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  ttccccttccttcctcgcgtc 66
           |||||||||||||||||||||
Sbjct: 322 ttccccttccttcctcgcgtc 302
to top
>ref|NM_188767.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 gacggcggcggcgtggttgc 329
           ||||||||||||||||||||
Sbjct: 906 gacggcggcggcgtggttgc 925
to top
>gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0672D07,
              complete sequence
          Length = 136465

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 56     ttcctcgcgtcgttttcttttcctccgt 83
              |||||||  |||||||||||||||||||
Sbjct: 106311 ttcctcgtttcgttttcttttcctccgt 106338
to top
>gb|AY676928.1| Oryza sativa (indica cultivar-group) transcription factor WRKY10
           (WRKY10) mRNA, complete cds
          Length = 1743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 gacggcggcggcgtggttgc 329
           ||||||||||||||||||||
Sbjct: 750 gacggcggcggcgtggttgc 769
to top
>ref|XM_420813.1| PREDICTED: Gallus gallus similar to Probable serine protease HTRA3
           precursor (LOC422868), mRNA
          Length = 2757

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  tttccccttccttcctcgcg 64
           ||||||||||||||||||||
Sbjct: 479 tttccccttccttcctcgcg 498
to top
>ref|XM_755491.1| Ustilago maydis 521 hypothetical protein (UM04437.1) partial mRNA
          Length = 4776

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   gctttgcttccgtcaccagc 26
           ||||||||||||||||||||
Sbjct: 281 gctttgcttccgtcaccagc 262
to top
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   gacggcggcggcgtggttgc 329
             ||||||||||||||||||||
Sbjct: 48556 gacggcggcggcgtggttgc 48575
to top
>gb|AY165512.1| Homo sapiens menage a trois 1 (CAK assembly factor) (MNAT1) gene,
              complete cds
          Length = 237446

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     tactcttccacctttccccttcct 56
              |||||||||||||||||| |||||
Sbjct: 139451 tactcttccacctttccctttcct 139474
to top
>emb|AL512272.15| Human DNA sequence from clone RP11-310M21 on chromosome 10, complete
             sequence
          Length = 127651

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     tttgcttccgtcaccagcac 28
             ||||||||||||||||||||
Sbjct: 72002 tttgcttccgtcaccagcac 71983
to top
>emb|AL162431.17| Human DNA sequence from clone RP11-46A10 on chromosome 1q25.2-31.1
              Contains the 3' end of the XPR1 gene for xenotropic and
              polytropic retrovirus receptor, three novel genes
              (FLJ32095), gene KIAA1614, a pseudogene similar to part of
              major histocompatibility complex class I-related MR1, the
              3' end of the STX6 gene for syntaxin 6 and a CpG island,
              complete sequence
          Length = 139006

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     cttccacctttccccttcct 56
              ||||||||||||||||||||
Sbjct: 107409 cttccacctttccccttcct 107390
to top
>emb|AL034408.2|HS710L4 Human DNA sequence from clone RP4-710L4 on chromosome Xq11.2-12
             Contains the 5' end of the MTMR8 gene for myotubularin
             related protein 8, a SHC (Src homology 2 domain
             containing) transforming protein 1 (SHC1) pseudogene and a
             CpG island, complete sequence
          Length = 129849

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    ttccacctttccccttccttcctc 61
             ||||||| ||||||||||||||||
Sbjct: 69523 ttccaccattccccttccttcctc 69500
to top
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    tggacggcggcggcgtggtt 327
              ||||||||||||||||||||
Sbjct: 166505 tggacggcggcggcgtggtt 166486
to top
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    tggacggcggcggcgtggtt 327
              ||||||||||||||||||||
Sbjct: 241517 tggacggcggcggcgtggtt 241536
to top
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    tggacggcggcggcgtggtt 327
              ||||||||||||||||||||
Sbjct: 187209 tggacggcggcggcgtggtt 187228
to top
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004G10
          Length = 150379

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   gacggcggcggcgtggttgc 329
             ||||||||||||||||||||
Sbjct: 81094 gacggcggcggcgtggttgc 81113
to top
>tpg|BK005004.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 1 (WRKY1) gene, complete cds
          Length = 2434

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  gacggcggcggcgtggttgc 329
            ||||||||||||||||||||
Sbjct: 1195 gacggcggcggcgtggttgc 1214
to top
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 131     tcgaactcgccaccgcccaaaaag 154
               |||||||| |||||||||||||||
Sbjct: 1738286 tcgaactccccaccgcccaaaaag 1738309
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 49       cccttccttcctcgcgtcgt 68
                ||||||||||||||||||||
Sbjct: 29146444 cccttccttcctcgcgtcgt 29146425
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 56      ttcctcgcgtcgttttcttttcctccgt 83
               |||||||  |||||||||||||||||||
Sbjct: 4351704 ttcctcgtttcgttttcttttcctccgt 4351731
to top
>emb|BX934040.1| Gallus gallus finished cDNA, clone ChEST59p14
          Length = 1777

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  tttccccttccttcctcgcg 64
           ||||||||||||||||||||
Sbjct: 190 tttccccttccttcctcgcg 209
to top
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0034C11
          Length = 139399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  gacggcggcggcgtggttgc 329
            ||||||||||||||||||||
Sbjct: 2161 gacggcggcggcgtggttgc 2180
to top
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    cccttccttcctcgcgtcgt 68
             ||||||||||||||||||||
Sbjct: 81562 cccttccttcctcgcgtcgt 81543
to top
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    cccttccttcctcgcgtcgt 68
             ||||||||||||||||||||
Sbjct: 94401 cccttccttcctcgcgtcgt 94382
to top
>emb|AJ132011.1|HSA132011 Homo sapiens MR1P1 pseudogene, partial
          Length = 1315

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  cttccacctttccccttcct 56
           ||||||||||||||||||||
Sbjct: 757 cttccacctttccccttcct 738
to top
>dbj|AK063566.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F09, full
           insert sequence
          Length = 1470

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  cccttccttcctcgcgtcgt 68
           ||||||||||||||||||||
Sbjct: 296 cccttccttcctcgcgtcgt 315
to top
>emb|AL160236.4|CNS01RH0 Human chromosome 14 DNA sequence BAC R-193F5 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     tactcttccacctttccccttcct 56
              |||||||||||||||||| |||||
Sbjct: 146552 tactcttccacctttccctttcct 146529
to top
>gb|AF073486.1|AF073486 Homo sapiens MHC class I-related protein MR1B pseudogene, partial
           sequence
          Length = 1350

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  cttccacctttccccttcct 56
           ||||||||||||||||||||
Sbjct: 769 cttccacctttccccttcct 750
to top
>gb|AC161927.11| Mus musculus chromosome 1, clone RP23-22I18, complete sequence
          Length = 223377

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    ttccacctttccccttccttcctc 61
             |||| |||||||||||||||||||
Sbjct: 40761 ttcctcctttccccttccttcctc 40784
to top
>emb|AJ315654.1|PTR315653 Pan Troglodytes partial mr1p1 pseudogene for MHC class I related
           protein
          Length = 1270

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  cttccacctttccccttcct 56
           ||||||||||||||||||||
Sbjct: 738 cttccacctttccccttcct 719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,463,812
Number of Sequences: 3902068
Number of extensions: 4463812
Number of successful extensions: 93437
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92976
Number of HSP's gapped (non-prelim): 461
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top