ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdo24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Canc... 42 1.7
2emb|AL935037.9| Zebrafish DNA sequence from clone CH211-188E8 in... 42 1.7
3emb|BX088571.5| Zebrafish DNA sequence from clone CH211-208H7 in... 42 1.7
4emb|AL669855.20| Mouse DNA sequence from clone RP23-82I5 on chro... 42 1.7
5gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.9
6gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome... 40 6.9
7gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 40 6.9
8gb|AC095066.4| Homo sapiens BAC clone RP11-651B17 from 4, comple... 40 6.9
9gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 6.9
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
11gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc... 40 6.9
12dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
13dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 6.9
14dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
15dbj|AP000908.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.9
16emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete ... 40 6.9
17gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 6.9
18emb|AL929571.10| Mouse DNA sequence from clone RP23-313G3 on chr... 40 6.9 
>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187215

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 331   atgatactctgtcatatgttg 351
             |||||||||||||||||||||
Sbjct: 59219 atgatactctgtcatatgttg 59239
to top
>emb|AL935037.9| Zebrafish DNA sequence from clone CH211-188E8 in linkage group 1,
             complete sequence
          Length = 141034

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   tctggtttgtgtgttacttcc 325
             |||||||||||||||||||||
Sbjct: 44257 tctggtttgtgtgttacttcc 44237
to top
>emb|BX088571.5| Zebrafish DNA sequence from clone CH211-208H7 in linkage group 1,
              complete sequence
          Length = 214441

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 305    tctggtttgtgtgttacttcc 325
              |||||||||||||||||||||
Sbjct: 105998 tctggtttgtgtgttacttcc 106018
to top
>emb|AL669855.20| Mouse DNA sequence from clone RP23-82I5 on chromosome 11, complete
              sequence
          Length = 207991

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 421    tgctcctgctgctacctttgc 441
              |||||||||||||||||||||
Sbjct: 187243 tgctcctgctgctacctttgc 187223
to top
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  gccgaggtgcaggtcggggc 184
            ||||||||||||||||||||
Sbjct: 7363 gccgaggtgcaggtcggggc 7382
to top
>gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome 15, complete sequence
          Length = 177331

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    cgcttagggggctgatttgg 43
             ||||||||||||||||||||
Sbjct: 16647 cgcttagggggctgatttgg 16628
to top
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     gggagcgagcagtgagggag 102
              ||||||||||||||||||||
Sbjct: 412243 gggagcgagcagtgagggag 412262
to top
>gb|AC095066.4| Homo sapiens BAC clone RP11-651B17 from 4, complete sequence
          Length = 97734

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   acctgaagatatgatctatg 296
             ||||||||||||||||||||
Sbjct: 33609 acctgaagatatgatctatg 33590
to top
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    gccgaggtgcaggtcggggc 184
              ||||||||||||||||||||
Sbjct: 571537 gccgaggtgcaggtcggggc 571556
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 264      tatgtttccctcaacctgaa 283
                ||||||||||||||||||||
Sbjct: 42700244 tatgtttccctcaacctgaa 42700225
to top
>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ctccttcccttctcttgctg 409
             ||||||||||||||||||||
Sbjct: 18958 ctccttcccttctcttgctg 18939
to top
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1656_A11
          Length = 148887

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   tatgtttccctcaacctgaa 283
             ||||||||||||||||||||
Sbjct: 33009 tatgtttccctcaacctgaa 32990
to top
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    tggatgatactctgtcatatgttg 351
              ||||||||||| ||||||||||||
Sbjct: 394586 tggatgatactttgtcatatgttg 394609
to top
>dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J03, full
            insert sequence
          Length = 1352

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  tatgtttccctcaacctgaa 283
            ||||||||||||||||||||
Sbjct: 1257 tatgtttccctcaacctgaa 1238
to top
>dbj|AP000908.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-711K22, complete
             sequence
          Length = 149132

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   catctccttcccttctcttg 406
             ||||||||||||||||||||
Sbjct: 98960 catctccttcccttctcttg 98979
to top
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 174    caggtcggggctcaccatgggagc 197
              |||||||| |||||||||||||||
Sbjct: 132365 caggtcggcgctcaccatgggagc 132388
to top
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    cgcttagggggctgatttgg 43
             ||||||||||||||||||||
Sbjct: 17191 cgcttagggggctgatttgg 17210
to top
>emb|AL929571.10| Mouse DNA sequence from clone RP23-313G3 on chromosome 2, complete
             sequence
          Length = 88123

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   catctctacctataagaaat 476
             ||||||||||||||||||||
Sbjct: 20460 catctctacctataagaaat 20441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,887,264
Number of Sequences: 3902068
Number of extensions: 3887264
Number of successful extensions: 73488
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73417
Number of HSP's gapped (non-prelim): 71
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top