ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdn21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/my... 30 2.3
2TNPX_ECOLI (Q00042) Putative transposon gamma-delta 80.3 kDa pro... 30 3.8
3AMPA_NEIMA (Q9JTI8) Probable cytosol aminopeptidase (EC 3.4.11.1... 30 3.8
4CSN11_KLULA (Q6CU48) COP9 signalosome complex subunit 11 29 5.0
5CWC22_CANAL (Q59XY0) Pre-mRNA-splicing factor CWC22 29 6.6
6MT2_CAEEL (P17512) Metallothionein-2 (MT-2) (Metallothionein-II)... 28 8.6

>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 251 YTASG-FWRAGLNLFVATEKLLTNPAEKERLKTCILRAREHLDEKEN 388
           Y A+G FW  GL   + +  LLT P  KE+++T    ++++L  KEN
Sbjct: 513 YVATGLFWVTGLITVIVS--LLTPPPTKEQIRTTTFWSKKNLVVKEN 557



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>TNPX_ECOLI (Q00042) Putative transposon gamma-delta 80.3 kDa protein|
           (Transposon Tn1000 protein tnpX)
          Length = 698

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 209 YSTVCRVATVLQTRYTASGFWRAGLNLFVATEKLLT------NPAEKERLKTCILRAREH 370
           Y+ +  +A+ + + Y  S          +++E LL       N A+ + L+ C L A+E+
Sbjct: 110 YAMLMEIASYISSHYKLSSQ--------ISSETLLNEHLKKWNSAQGDILRKCRLVAKEY 161

Query: 371 LDEKENEESM 400
           LDE   EES+
Sbjct: 162 LDENNPEESI 171



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>AMPA_NEIMA (Q9JTI8) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 468

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 310 QLLCCYEEVQTSAPESRCCISSLKDGCNTANRRV 209
           QL  C EE Q + P +   +SSL++G N A+ ++
Sbjct: 18  QLFVCTEEAQLNHPTALALLSSLEEGQNFADTKI 51



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>CSN11_KLULA (Q6CU48) COP9 signalosome complex subunit 11|
          Length = 389

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 161 LRDRYDGASPALRESMYSTVCRVATVLQTRYTASGFWRAGLNLFVATEKL 310
           L  ++D  S  +R+ MY+   R+AT +Q  Y +    R G++  + T+++
Sbjct: 239 LEKKWDIISKTMRQKMYAFYLRIATKIQISYLSE---RVGISREIVTQEI 285



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>CWC22_CANAL (Q59XY0) Pre-mRNA-splicing factor CWC22|
          Length = 648

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 272 RAGLNLFVATEKLLTNPAEKERLKTCILRAREHLDEKENE 391
           R  LN+F   E+ L +  E   LK  IL   +H DE ENE
Sbjct: 265 RDHLNVFSVDEEYLDHENEYIELKKEILGETDHEDENENE 304



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>MT2_CAEEL (P17512) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)|
           (Metallothionein-like protein) (MT-Ce)
          Length = 62

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 301 CCYEEVQTSAPESRCCISSLKDGCNTAN 218
           CC +    +A E +CC S    GC  AN
Sbjct: 27  CCEQYCCPTASEKKCCKSGCAGGCKCAN 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,210,399
Number of Sequences: 219361
Number of extensions: 650787
Number of successful extensions: 1802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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