>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 18   QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 134
            ++E +  +++AG  PS+ S    R RPP   Q S   SP
Sbjct: 3468 EREAVERLQKAGPKPSSLSMAHSRVRPPMRSQASEEESP 3506

>AFF3_HUMAN (P51826) AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear|
           protein related to AF4)
          Length = 1227

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 18  QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSS 131
           QQ   RT  RA +  +   +P CRT  P S   S+SSS
Sbjct: 381 QQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSS 418

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 18   QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 134
            ++E  + +++AG  PS+ S    R RPP   Q S   SP
Sbjct: 3464 ERETAQRLQKAGPKPSSLSMAHGRARPPMRSQASEEESP 3502

>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50|
          Length = 552

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 33  RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEA 149
           R  RRAGATP   + P   + P ++ + S  + PA   A
Sbjct: 10  RRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPAEPRA 48

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 15   GQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARN 143
            GQ +C    R+      TAS P C    PR C+   +SSP ++
Sbjct: 1347 GQVKC----RKGEQCVHTASGPRCFCPSPRDCESGCASSPCQH 1385

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 18   QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 134
            +++    +++AG+ PS+ S    R RPP   Q S   SP
Sbjct: 3478 ERDTAERLQKAGSKPSSLSMAHGRARPPMRSQASEEESP 3516

>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)|
          Length = 312

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 112 WHDLGGLVLHVGSEAVLGVAPALLMVLKHSCCP 14
           WH++ GL++  G +  L V P     L  + CP
Sbjct: 275 WHEINGLLVGFGQQTCLPVHPRCHACLNQALCP 307

>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding|
           athanogene-3) (BAG-3) (Bcl-2-binding protein Bis)
          Length = 577

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 12  GGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNE 146
           GG  E  +T ++ G  P+TA+  T   +PP +     S SPA ++
Sbjct: 142 GGMTEAAQTDKQCGQMPATAT--TAAAQPPTAHGPERSQSPAASD 184

>TSH_DROME (P22265) Protein teashirt|
          Length = 954

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 42  RRAGATPSTASEPTCRTRPPRSCQES----TSSSPA 137
           R +  TPS+A+ P  R  PPRS  ES    T  SPA
Sbjct: 839 RSSPKTPSSAASPQTRLLPPRSPAESQRSVTPKSPA 874

>HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 424

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 57  TPSTASEPTCRTRPPRSCQE 116
           TP T+S PT R   PR+C+E
Sbjct: 204 TPGTSSSPTGRNPRPRACEE 223

>YLB8_CAEEL (P46582) Hypothetical protein C34E10.8|
          Length = 1024

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 33  RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEA 149
           R  + +  TPST++  +    PP+S Q  TSS   R++A
Sbjct: 579 RHAQHSPLTPSTSTSSSQLLAPPKSPQPGTSSQTFRSQA 617


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,437,876
Number of Sequences: 219361
Number of extensions: 603691
Number of successful extensions: 2132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2123
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)