ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdo01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome... 224 1e-55
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 224 1e-55
3gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 224 1e-55
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 224 1e-55
5dbj|AK073386.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 1e-55
6gb|AY109543.1| Zea mays CL854_1 mRNA sequence 182 4e-43
7ref|NM_196102.1| Oryza sativa (japonica cultivar-group) putative... 125 8e-26
8gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 125 8e-26
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 125 8e-26
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 125 8e-26
11emb|BX831005.1|CNS0A0O3 Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
12gb|BT014572.1| Lycopersicon esculentum clone 134027R, mRNA sequence 58 2e-05
13ref|NM_203174.1| Arabidopsis thaliana PAT1 (PHYTOCHROME A SIGNAL... 54 2e-04
14ref|NM_124189.3| Arabidopsis thaliana PAT1 (PHYTOCHROME A SIGNAL... 54 2e-04
15gb|BT025326.1| Arabidopsis thaliana At5g48150 mRNA, complete cds 54 2e-04
16emb|BX831686.1|CNS0A10E Arabidopsis thaliana Full-length cDNA Co... 54 2e-04
17gb|AF153443.1|AF153443 Arabidopsis thaliana phytochrome A signal... 54 2e-04
18dbj|AK117483.1| Arabidopsis thaliana At5g48150 mRNA for putative... 54 2e-04
19dbj|AB023039.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 54 2e-04
20emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4,... 52 0.001
21emb|AJ538575.1|NTA538575 Nicotiana tabacum cDNA-AFLP-fragment BC... 52 0.001
22ref|NM_126521.2| Arabidopsis thaliana SCL21 (SCARECROW-LIKE 21);... 46 0.058
23ref|XM_478905.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.058
24ref|XM_506430.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.058
25dbj|AK061928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.058
26gb|AC007211.6| Arabidopsis thaliana chromosome 2 BAC F1O13 genom... 46 0.058
27gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map... 46 0.058
28dbj|AK221099.1| Arabidopsis thaliana mRNA for putative SCARECROW... 46 0.058
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.058
30emb|BX818810.1|CNS0A9T0 Arabidopsis thaliana Full-length cDNA Co... 46 0.058
31emb|BX821639.1|CNS0A92G Arabidopsis thaliana Full-length cDNA Co... 46 0.058
32gb|AY062210.1| Oryza sativa chitin-inducible gibberellin-respons... 46 0.058
33gb|AF210732.1|AF210732 Arabidopsis thaliana scarecrow-like 21 (S... 46 0.058
34emb|AJ538615.1|NTA538615 Nicotiana tabacum cDNA-AFLP-fragment BC... 46 0.058
35dbj|AK175990.1| Arabidopsis thaliana mRNA for putative SCARECROW... 46 0.058
36dbj|AK175210.1| Arabidopsis thaliana mRNA for putative SCARECROW... 46 0.058
37dbj|AP003747.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.058
38dbj|AK122131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.058
39dbj|AK098890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.058
40dbj|AK073470.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.058
41emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section... 42 0.91
42gb|AC148526.24| Medicago truncatula clone mth2-53k6, complete se... 40 3.6
43gb|AY312169.1| Zea mays homeobox transcription factor KNOTTED1 (... 40 3.6
44gb|AY727731.1| Anopheles funestus isolate 442 NADH dehydrogenase... 40 3.6
45gb|AY727676.1| Anopheles funestus isolate 220 NADH dehydrogenase... 40 3.6
46gb|AY260164.1| Zea mays KNOTTED1 (kn1) gene, complete cds 40 3.6
47gb|AY062209.1| Oryza sativa chitin-inducible gibberellin-respons... 40 3.6
48dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
49dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
50dbj|AK069266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
51emb|AL772203.14| Mouse DNA sequence from clone RP23-398I1 on chr... 40 3.6
52gb|DQ102955.1| Anopheles funestus KE52 from Kenya NADH dehydroge... 40 3.6
53gb|DQ102952.1| Anopheles funestus KE31 from Kenya NADH dehydroge... 40 3.6 
>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNOa0279P04, complete sequence
          Length = 32479

 Score =  224 bits (113), Expect = 1e-55
 Identities = 234/275 (85%), Gaps = 6/275 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     ggagcgtatatgttggaaggccttgttgcgaggcgttattctactggacatgcgttgtat 61
             ||||| ||||||||||||||||||||||| |||| || ||| ||||| ||||| || |||
Sbjct: 16766 ggagcctatatgttggaaggccttgttgccaggctttcttcgactgggcatgccttatat 16825

                                                                         
Query: 62    aaatctctgaagtgtaaggaacctcaacctacaaattcagagctcatgtcctacatgcat 121
             ||||| ||||||||||| |||      ||||| |  |  ||||||||||| || ||||||
Sbjct: 16826 aaatccctgaagtgtaaagaa------cctactagcttcgagctcatgtcttatatgcat 16879

                                                                         
Query: 122   cttctctatgatatctgtccattcttcaaatttggttacatgtctgccaatggtgctata 181
             || |||||||| || || || || ||||| ||||||||||||||||||||||| || || 
Sbjct: 16880 ctcctctatgagatatgcccgtttttcaagtttggttacatgtctgccaatggagcaatt 16939

                                                                         
Query: 182   gccgaggctgttaagggtgagaactttattcacatcattgatttccaaattgctcaaggg 241
             || |||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| 
Sbjct: 16940 gcagaggctgttaagggcgagaactttgttcacatcatcgacttccaaattgctcaaggt 16999

                                                
Query: 242   agccagngggtaactatgatacaggcccttgctgc 276
             |||||| ||| ||||||||||||||||||||||||
Sbjct: 17000 agccagtgggcaactatgatacaggcccttgctgc 17034
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  224 bits (113), Expect = 1e-55
 Identities = 234/275 (85%), Gaps = 6/275 (2%)
 Strand = Plus / Plus

                                                                           
Query: 2       ggagcgtatatgttggaaggccttgttgcgaggcgttattctactggacatgcgttgtat 61
               ||||| ||||||||||||||||||||||| |||| || ||| ||||| ||||| || |||
Sbjct: 4833130 ggagcctatatgttggaaggccttgttgccaggctttcttcgactgggcatgccttatat 4833189

                                                                           
Query: 62      aaatctctgaagtgtaaggaacctcaacctacaaattcagagctcatgtcctacatgcat 121
               ||||| ||||||||||| |||      ||||| |  |  ||||||||||| || ||||||
Sbjct: 4833190 aaatccctgaagtgtaaagaa------cctactagcttcgagctcatgtcttatatgcat 4833243

                                                                           
Query: 122     cttctctatgatatctgtccattcttcaaatttggttacatgtctgccaatggtgctata 181
               || |||||||| || || || || ||||| ||||||||||||||||||||||| || || 
Sbjct: 4833244 ctcctctatgagatatgcccgtttttcaagtttggttacatgtctgccaatggagcaatt 4833303

                                                                           
Query: 182     gccgaggctgttaagggtgagaactttattcacatcattgatttccaaattgctcaaggg 241
               || |||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| 
Sbjct: 4833304 gcagaggctgttaagggcgagaactttgttcacatcatcgacttccaaattgctcaaggt 4833363

                                                  
Query: 242     agccagngggtaactatgatacaggcccttgctgc 276
               |||||| ||| ||||||||||||||||||||||||
Sbjct: 4833364 agccagtgggcaactatgatacaggcccttgctgc 4833398
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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  224 bits (113), Expect = 1e-55
 Identities = 234/275 (85%), Gaps = 6/275 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    ggagcgtatatgttggaaggccttgttgcgaggcgttattctactggacatgcgttgtat 61
            ||||| ||||||||||||||||||||||| |||| || ||| ||||| ||||| || |||
Sbjct: 2325 ggagcctatatgttggaaggccttgttgccaggctttcttcgactgggcatgccttatat 2266

                                                                        
Query: 62   aaatctctgaagtgtaaggaacctcaacctacaaattcagagctcatgtcctacatgcat 121
            ||||| ||||||||||| |||      ||||| |  |  ||||||||||| || ||||||
Sbjct: 2265 aaatccctgaagtgtaaagaa------cctactagcttcgagctcatgtcttatatgcat 2212

                                                                        
Query: 122  cttctctatgatatctgtccattcttcaaatttggttacatgtctgccaatggtgctata 181
            || |||||||| || || || || ||||| ||||||||||||||||||||||| || || 
Sbjct: 2211 ctcctctatgagatatgcccgtttttcaagtttggttacatgtctgccaatggagcaatt 2152

                                                                        
Query: 182  gccgaggctgttaagggtgagaactttattcacatcattgatttccaaattgctcaaggg 241
            || |||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| 
Sbjct: 2151 gcagaggctgttaagggcgagaactttgttcacatcatcgacttccaaattgctcaaggt 2092

                                               
Query: 242  agccagngggtaactatgatacaggcccttgctgc 276
            |||||| ||| ||||||||||||||||||||||||
Sbjct: 2091 agccagtgggcaactatgatacaggcccttgctgc 2057
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  224 bits (113), Expect = 1e-55
 Identities = 234/275 (85%), Gaps = 6/275 (2%)
 Strand = Plus / Plus

                                                                           
Query: 2       ggagcgtatatgttggaaggccttgttgcgaggcgttattctactggacatgcgttgtat 61
               ||||| ||||||||||||||||||||||| |||| || ||| ||||| ||||| || |||
Sbjct: 4833245 ggagcctatatgttggaaggccttgttgccaggctttcttcgactgggcatgccttatat 4833304

                                                                           
Query: 62      aaatctctgaagtgtaaggaacctcaacctacaaattcagagctcatgtcctacatgcat 121
               ||||| ||||||||||| |||      ||||| |  |  ||||||||||| || ||||||
Sbjct: 4833305 aaatccctgaagtgtaaagaa------cctactagcttcgagctcatgtcttatatgcat 4833358

                                                                           
Query: 122     cttctctatgatatctgtccattcttcaaatttggttacatgtctgccaatggtgctata 181
               || |||||||| || || || || ||||| ||||||||||||||||||||||| || || 
Sbjct: 4833359 ctcctctatgagatatgcccgtttttcaagtttggttacatgtctgccaatggagcaatt 4833418

                                                                           
Query: 182     gccgaggctgttaagggtgagaactttattcacatcattgatttccaaattgctcaaggg 241
               || |||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| 
Sbjct: 4833419 gcagaggctgttaagggcgagaactttgttcacatcatcgacttccaaattgctcaaggt 4833478

                                                  
Query: 242     agccagngggtaactatgatacaggcccttgctgc 276
               |||||| ||| ||||||||||||||||||||||||
Sbjct: 4833479 agccagtgggcaactatgatacaggcccttgctgc 4833513
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>dbj|AK073386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041E22, full
            insert sequence
          Length = 2582

 Score =  224 bits (113), Expect = 1e-55
 Identities = 234/275 (85%), Gaps = 6/275 (2%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggagcgtatatgttggaaggccttgttgcgaggcgttattctactggacatgcgttgtat 61
            ||||| ||||||||||||||||||||||| |||| || ||| ||||| ||||| || |||
Sbjct: 1103 ggagcctatatgttggaaggccttgttgccaggctttcttcgactgggcatgccttatat 1162

                                                                        
Query: 62   aaatctctgaagtgtaaggaacctcaacctacaaattcagagctcatgtcctacatgcat 121
            ||||| ||||||||||| |||      ||||| |  |  ||||||||||| || ||||||
Sbjct: 1163 aaatccctgaagtgtaaagaa------cctactagcttcgagctcatgtcttatatgcat 1216

                                                                        
Query: 122  cttctctatgatatctgtccattcttcaaatttggttacatgtctgccaatggtgctata 181
            || |||||||| || || || || ||||| ||||||||||||||||||||||| || || 
Sbjct: 1217 ctcctctatgagatatgcccgtttttcaagtttggttacatgtctgccaatggagcaatt 1276

                                                                        
Query: 182  gccgaggctgttaagggtgagaactttattcacatcattgatttccaaattgctcaaggg 241
            || |||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| 
Sbjct: 1277 gcagaggctgttaagggcgagaactttgttcacatcatcgacttccaaattgctcaaggt 1336

                                               
Query: 242  agccagngggtaactatgatacaggcccttgctgc 276
            |||||| ||| ||||||||||||||||||||||||
Sbjct: 1337 agccagtgggcaactatgatacaggcccttgctgc 1371
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>gb|AY109543.1| Zea mays CL854_1 mRNA sequence
          Length = 2341

 Score =  182 bits (92), Expect = 4e-43
 Identities = 227/274 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    gggagcgtatatgttggaaggccttgttgcgaggcgttattctactggacatgcgttgta 60
            |||||| || ||||||||||||||  ||||||||| || ||  ||||||||||| |||||
Sbjct: 952  gggagcttacatgttggaaggcctcattgcgaggctttctttcactggacatgccttgta 1011

                                                                        
Query: 61   taaatctctgaagtgtaaggaacctcaacctacaaattcagagctcatgtcctacatgca 120
            ||||||||||||||| || || |||    |||| | ||| |||||| ||||||| |||||
Sbjct: 1012 taaatctctgaagtgcaaagagcctgtggctacgagttctgagctcttgtcctatatgca 1071

                                                                        
Query: 121  tcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaatggtgctat 180
            |||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| | ||
Sbjct: 1072 tcttctttatgagatctgtccattcttcaagttcggttacatgtctgccaatggtcccat 1131

                                                                        
Query: 181  agccgaggctgttaagggtgagaactttattcacatcattgatttccaaattgctcaagg 240
            ||| || || |||||     |  || ||||||||||||| ||||| ||||| ||||| ||
Sbjct: 1132 agctgaagcggttaannnnnaagacattattcacatcatcgattttcaaatcgctcaggg 1191

                                              
Query: 241  gagccagngggtaactatgatacaggcccttgct 274
             || ||| || | |||||||||||||||||||||
Sbjct: 1192 tagtcagtggatgactatgatacaggcccttgct 1225
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>ref|NM_196102.1| Oryza sativa (japonica cultivar-group) putative SCARECROW gene
           regulator-like (OJ1003C07.9), mRNA
          Length = 1575

 Score =  125 bits (63), Expect = 8e-26
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                       
Query: 101 gagctcatgtcctacatgcatcttctctatgatatctgtccattcttcaaatttggttac 160
           ||||||||||| |||||||||||||| || || || || |||||||||||||||||||| 
Sbjct: 676 gagctcatgtcatacatgcatcttctttacgagatatgcccattcttcaaatttggttat 735

                                                                       
Query: 161 atgtctgccaatggtgctatagccgaggctgttaagggtgagaactttattcacatcatt 220
           ||||| || ||||| || || || || ||| ||||||| ||||||||| ||||||| |||
Sbjct: 736 atgtcagctaatggcgccatcgctgaagctattaagggagagaactttgttcacataatt 795

                                  
Query: 221 gatttccaaattgctcaagggag 243
           || ||||||||||| ||||||||
Sbjct: 796 gacttccaaattgcacaagggag 818



 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 8   tatatgttggaaggccttgttgc 30
           |||||||||||||||||||||||
Sbjct: 589 tatatgttggaaggccttgttgc 611
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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score =  125 bits (63), Expect = 8e-26
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                         
Query: 101   gagctcatgtcctacatgcatcttctctatgatatctgtccattcttcaaatttggttac 160
             ||||||||||| |||||||||||||| || || || || |||||||||||||||||||| 
Sbjct: 68093 gagctcatgtcatacatgcatcttctttacgagatatgcccattcttcaaatttggttat 68152

                                                                         
Query: 161   atgtctgccaatggtgctatagccgaggctgttaagggtgagaactttattcacatcatt 220
             ||||| || ||||| || || || || ||| ||||||| ||||||||| ||||||| |||
Sbjct: 68153 atgtcagctaatggcgccatcgctgaagctattaagggagagaactttgttcacataatt 68212

                                    
Query: 221   gatttccaaattgctcaagggag 243
             || ||||||||||| ||||||||
Sbjct: 68213 gacttccaaattgcacaagggag 68235



 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 8     tatatgttggaaggccttgttgc 30
             |||||||||||||||||||||||
Sbjct: 68006 tatatgttggaaggccttgttgc 68028
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  125 bits (63), Expect = 8e-26
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                            
Query: 101      gagctcatgtcctacatgcatcttctctatgatatctgtccattcttcaaatttggttac 160
                ||||||||||| |||||||||||||| || || || || |||||||||||||||||||| 
Sbjct: 11090964 gagctcatgtcatacatgcatcttctttacgagatatgcccattcttcaaatttggttat 11090905

                                                                            
Query: 161      atgtctgccaatggtgctatagccgaggctgttaagggtgagaactttattcacatcatt 220
                ||||| || ||||| || || || || ||| ||||||| ||||||||| ||||||| |||
Sbjct: 11090904 atgtcagctaatggcgccatcgctgaagctattaagggagagaactttgttcacataatt 11090845

                                       
Query: 221      gatttccaaattgctcaagggag 243
                || ||||||||||| ||||||||
Sbjct: 11090844 gacttccaaattgcacaagggag 11090822



 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 8        tatatgttggaaggccttgttgc 30
                |||||||||||||||||||||||
Sbjct: 11091051 tatatgttggaaggccttgttgc 11091029
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  125 bits (63), Expect = 8e-26
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                            
Query: 101      gagctcatgtcctacatgcatcttctctatgatatctgtccattcttcaaatttggttac 160
                ||||||||||| |||||||||||||| || || || || |||||||||||||||||||| 
Sbjct: 11097404 gagctcatgtcatacatgcatcttctttacgagatatgcccattcttcaaatttggttat 11097345

                                                                            
Query: 161      atgtctgccaatggtgctatagccgaggctgttaagggtgagaactttattcacatcatt 220
                ||||| || ||||| || || || || ||| ||||||| ||||||||| ||||||| |||
Sbjct: 11097344 atgtcagctaatggcgccatcgctgaagctattaagggagagaactttgttcacataatt 11097285

                                       
Query: 221      gatttccaaattgctcaagggag 243
                || ||||||||||| ||||||||
Sbjct: 11097284 gacttccaaattgcacaagggag 11097262



 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 8        tatatgttggaaggccttgttgc 30
                |||||||||||||||||||||||
Sbjct: 11097491 tatatgttggaaggccttgttgc 11097469
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>emb|BX831005.1|CNS0A0O3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS48ZD10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1693

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 106/131 (80%)
 Strand = Plus / Plus

                                                                       
Query: 113 tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
           ||||||||  ||||||||||  | ||||| | |||||| ||||| ||||||||| | |||
Sbjct: 727 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcttcaaat 786

                                                                       
Query: 173 ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
           |||||||| || |||||  | ||||  ||||||    ||||||| |||||||||||||| 
Sbjct: 787 ggtgctattgctgaggcaatgaaggaagagaacagagttcacattattgatttccaaatc 846

                      
Query: 233 gctcaagggag 243
           | |||||||||
Sbjct: 847 ggtcaagggag 857
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>gb|BT014572.1| Lycopersicon esculentum clone 134027R, mRNA sequence
          Length = 2086

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 218  attgatttccaaattgctcaagggagccagngggtaactatgat 261
            |||||||| ||||||||||||||||||||| ||||  |||||||
Sbjct: 1143 attgattttcaaattgctcaagggagccagtgggtgcctatgat 1186



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 145  cttcaaatttggttacatgtctgccaatggtgc 177
            |||||||||||| |||||||| || ||||||||
Sbjct: 1070 cttcaaatttggatacatgtcagctaatggtgc 1102
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>ref|NM_203174.1| Arabidopsis thaliana PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1);
           transcription factor AT5G48150 (PAT1) transcript variant
           AT5G48150.2 mRNA, complete cds
          Length = 1927

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 105/131 (80%)
 Strand = Plus / Plus

                                                                       
Query: 113 tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
           ||||||||  ||||||||||  | ||||| | |||||| ||||| |||||||| || |||
Sbjct: 802 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcagcaaat 861

                                                                       
Query: 173 ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
           |||||||| || |||||  | ||||  || |||    ||||||| |||||||||||||| 
Sbjct: 862 ggtgctattgctgaggcaatgaaggaagaaaacagagttcacattattgatttccaaatc 921

                      
Query: 233 gctcaagggag 243
           | |||||||||
Sbjct: 922 ggtcaagggag 932
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>ref|NM_124189.3| Arabidopsis thaliana PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1);
           transcription factor AT5G48150 (PAT1) transcript variant
           AT5G48150.1 mRNA, complete cds
          Length = 1852

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 105/131 (80%)
 Strand = Plus / Plus

                                                                       
Query: 113 tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
           ||||||||  ||||||||||  | ||||| | |||||| ||||| |||||||| || |||
Sbjct: 727 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcagcaaat 786

                                                                       
Query: 173 ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
           |||||||| || |||||  | ||||  || |||    ||||||| |||||||||||||| 
Sbjct: 787 ggtgctattgctgaggcaatgaaggaagaaaacagagttcacattattgatttccaaatc 846

                      
Query: 233 gctcaagggag 243
           | |||||||||
Sbjct: 847 ggtcaagggag 857
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>gb|BT025326.1| Arabidopsis thaliana At5g48150 mRNA, complete cds
          Length = 1473

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 105/131 (80%)
 Strand = Plus / Plus

                                                                       
Query: 113 tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
           ||||||||  ||||||||||  | ||||| | |||||| ||||| |||||||| || |||
Sbjct: 586 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcagcaaat 645

                                                                       
Query: 173 ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
           |||||||| || |||||  | ||||  || |||    ||||||| |||||||||||||| 
Sbjct: 646 ggtgctattgctgaggcaatgaaggaagaaaacagagttcacattattgatttccaaatc 705

                      
Query: 233 gctcaagggag 243
           | |||||||||
Sbjct: 706 ggtcaagggag 716
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>emb|BX831686.1|CNS0A10E Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH23ZG07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1756

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 105/131 (80%)
 Strand = Plus / Plus

                                                                       
Query: 113 tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
           ||||||||  ||||||||||  | ||||| | |||||| ||||| |||||||| || |||
Sbjct: 802 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcagcaaat 861

                                                                       
Query: 173 ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
           |||||||| || |||||  | ||||  || |||    ||||||| |||||||||||||| 
Sbjct: 862 ggtgctattgctgaggcaatgaaggaagaaaacagagttcacattattgatttccaaatc 921

                      
Query: 233 gctcaagggag 243
           | |||||||||
Sbjct: 922 ggtcaagggag 932
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>gb|AF153443.1|AF153443 Arabidopsis thaliana phytochrome A signal transduction 1 protein
           (PAT1) mRNA, complete cds
          Length = 1793

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 105/131 (80%)
 Strand = Plus / Plus

                                                                       
Query: 113 tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
           ||||||||  ||||||||||  | ||||| | |||||| ||||| |||||||| || |||
Sbjct: 715 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcagcaaat 774

                                                                       
Query: 173 ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
           |||||||| || |||||  | ||||  || |||    ||||||| |||||||||||||| 
Sbjct: 775 ggtgctattgctgaggcaatgaaggaagaaaacagagttcacattattgatttccaaatc 834

                      
Query: 233 gctcaagggag 243
           | |||||||||
Sbjct: 835 ggtcaagggag 845
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>dbj|AK117483.1| Arabidopsis thaliana At5g48150 mRNA for putative SCARECROW gene
           regulator, complete cds, clone: RAFL17-10-L05
          Length = 1461

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 105/131 (80%)
 Strand = Plus / Plus

                                                                       
Query: 113 tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
           ||||||||  ||||||||||  | ||||| | |||||| ||||| |||||||| || |||
Sbjct: 446 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcagcaaat 505

                                                                       
Query: 173 ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
           |||||||| || |||||  | ||||  || |||    ||||||| |||||||||||||| 
Sbjct: 506 ggtgctattgctgaggcaatgaaggaagaaaacagagttcacattattgatttccaaatc 565

                      
Query: 233 gctcaagggag 243
           | |||||||||
Sbjct: 566 ggtcaagggag 576
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>dbj|AB023039.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIF21
          Length = 59372

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                         
Query: 113   tacatgcatcttctctatgatatctgtccattcttcaaatttggttacatgtctgccaat 172
             ||||||||  ||||||||||  | ||||| | |||||| ||||| |||||||| || |||
Sbjct: 15083 tacatgcacattctctatgaggtttgtccttacttcaagtttggatacatgtcagcaaat 15024

                                                                         
Query: 173   ggtgctatagccgaggctgttaagggtgagaactttattcacatcattgatttccaaatt 232
             |||||||| || |||||  | ||||  || |||    ||||||| |||||||||||||| 
Sbjct: 15023 ggtgctattgctgaggcaatgaaggaagaaaacagagttcacattattgatttccaaatc 14964

                        
Query: 233   gctcaagggag 243
             | |||||||||
Sbjct: 14963 ggtcaagggag 14953
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>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE
          Length = 108871

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 145   cttcaaatttggttacatgtctgccaatgg 174
             |||||||||||||||||||||||| |||||
Sbjct: 75001 cttcaaatttggttacatgtctgcaaatgg 74972



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 221   gatttccaaattgctcaagggagcca 246
             |||||||||||||||||||| |||||
Sbjct: 74925 gatttccaaattgctcaaggaagcca 74900
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>emb|AJ538575.1|NTA538575 Nicotiana tabacum cDNA-AFLP-fragment BC3-M24-001
          Length = 445

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 209 attcacatcattgatttccaaattgctcaaggga 242
           ||||||||||| |||||||||||||| |||||||
Sbjct: 176 attcacatcatagatttccaaattgcgcaaggga 209



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 152 tttggttacatgtctgccaatggtgctatagc 183
           |||||||||||| |||| |||||||| |||||
Sbjct: 119 tttggttacatggctgcaaatggtgcaatagc 150
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>ref|NM_126521.2| Arabidopsis thaliana SCL21 (SCARECROW-LIKE 21); transcription
           factor AT2G04890 (SCL21) mRNA, complete cds
          Length = 2220

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 209 attcacatcattgatttccaaattgctcaagggagccag 247
           |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 656 attcacattattgacttccaaattggacaagggagccag 694
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>ref|XM_478905.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2224

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 136  ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
            |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 1082 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 1141

               
Query: 196  ggg 198
            |||
Sbjct: 1142 ggg 1144
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>ref|XM_506430.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1127_E01.113 mRNA
          Length = 2234

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 136  ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
            |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 1082 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 1141

               
Query: 196  ggg 198
            |||
Sbjct: 1142 ggg 1144
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>dbj|AK061928.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C06, full
           insert sequence
          Length = 1343

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 136 ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
           |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 168 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 227

              
Query: 196 ggg 198
           |||
Sbjct: 228 ggg 230
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>gb|AC007211.6| Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence,
            complete sequence
          Length = 103889

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 209  attcacatcattgatttccaaattgctcaagggagccag 247
            |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 2914 attcacattattgacttccaaattggacaagggagccag 2876
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>gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete
            sequence
          Length = 116217

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 209  attcacatcattgatttccaaattgctcaagggagccag 247
            |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 7874 attcacattattgacttccaaattggacaagggagccag 7912
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>dbj|AK221099.1| Arabidopsis thaliana mRNA for putative SCARECROW gene regulator,
           complete cds, clone: RAFL22-85-M15
          Length = 1526

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 209 attcacatcattgatttccaaattgctcaagggagccag 247
           |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 629 attcacattattgacttccaaattggacaagggagccag 667
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 136      ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
                |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 23599317 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 23599376

                   
Query: 196      ggg 198
                |||
Sbjct: 23599377 ggg 23599379



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 199      tgagaactttattcacatcattgatttccaaattgctcaaggga 242
                |||||||  ||| ||||| |||||||| || |||||||||||||
Sbjct: 21564998 tgagaacaatatccacataattgattttcagattgctcaaggga 21565041
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>emb|BX818810.1|CNS0A9T0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB15ZE12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1588

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 209 attcacatcattgatttccaaattgctcaagggagccag 247
           |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 637 attcacattattgacttccaaattggacaagggagccag 675
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>emb|BX821639.1|CNS0A92G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL5ZG09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1497

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 209 attcacatcattgatttccaaattgctcaagggagccag 247
           |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 606 attcacattattgacttccaaattggacaagggagccag 644



 Score = 46.1 bits (23), Expect = 0.058
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 1   gggagcgtatatgttggaaggccttgttgcgaggc 35
           |||||| |||||||| ||||| |||||||||||||
Sbjct: 404 gggagcttatatgttagaagggcttgttgcgaggc 438
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>gb|AY062210.1| Oryza sativa chitin-inducible gibberellin-responsive protein (GIGR2)
            mRNA, complete cds
          Length = 2157

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 136  ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
            |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 1071 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 1130

               
Query: 196  ggg 198
            |||
Sbjct: 1131 ggg 1133
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>gb|AF210732.1|AF210732 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds
          Length = 1634

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 209 attcacatcattgatttccaaattgctcaagggagccag 247
           |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 656 attcacattattgacttccaaattggacaagggagccag 694
to top
>emb|AJ538615.1|NTA538615 Nicotiana tabacum cDNA-AFLP-fragment BC3-M42-008
          Length = 341

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 149 aaatttggttacatgtctgccaatggtgctatagc 183
           ||||||||||||||| |||| |||||||| |||||
Sbjct: 135 aaatttggttacatggctgcaaatggtgcaatagc 169
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>dbj|AK175990.1| Arabidopsis thaliana mRNA for putative SCARECROW gene regulator,
           complete cds, clone: RAFL22-68-E12
          Length = 1526

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 209 attcacatcattgatttccaaattgctcaagggagccag 247
           |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 629 attcacattattgacttccaaattggacaagggagccag 667
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>dbj|AK175210.1| Arabidopsis thaliana mRNA for putative SCARECROW gene regulator,
           complete cds, clone: RAFL21-63-H23
          Length = 1617

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 209 attcacatcattgatttccaaattgctcaagggagccag 247
           |||||||| ||||| ||||||||||  ||||||||||||
Sbjct: 629 attcacattattgacttccaaattggacaagggagccag 667
to top
>dbj|AP003747.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1127_E01
          Length = 123787

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                         
Query: 136   ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
             |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 51758 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 51817

                
Query: 196   ggg 198
             |||
Sbjct: 51818 ggg 51820
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>dbj|AK122131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B20, full
            insert sequence
          Length = 2272

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 136  ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
            |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 1130 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 1189

               
Query: 196  ggg 198
            |||
Sbjct: 1190 ggg 1192
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>dbj|AK098890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M01, full
            insert sequence
          Length = 2224

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 136  ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
            |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 1082 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 1141

               
Query: 196  ggg 198
            |||
Sbjct: 1142 ggg 1144
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>dbj|AK073470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044I02, full
            insert sequence
          Length = 2234

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 136  ctgtccattcttcaaatttggttacatgtctgccaatggtgctatagccgaggctgttaa 195
            |||||| | |||||| ||||| || ||||| || ||||||||||| || |||||||| ||
Sbjct: 1082 ctgtccctacttcaagtttgggtatatgtcggcaaatggtgctattgcagaggctgtcaa 1141

               
Query: 196  ggg 198
            |||
Sbjct: 1142 ggg 1144
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>emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section 9 of 21): from 1602883 to
             1807145
          Length = 204263

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 215   atcattgatttccaaattgctcaag 239
             ||||||||||| |||||||||||||
Sbjct: 70890 atcattgattttcaaattgctcaag 70914
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>gb|AC148526.24| Medicago truncatula clone mth2-53k6, complete sequence
          Length = 89055

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 209  attcacatcattgatttccaaattgctcaagg 240
            |||||||| ||||| ||||||||||| |||||
Sbjct: 8951 attcacataattgacttccaaattgcacaagg 8982
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>gb|AY312169.1| Zea mays homeobox transcription factor KNOTTED1 (kn1) gene, complete
            cds
          Length = 22402

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  gtccattcttcaaatttggt 157
            ||||||||||||||||||||
Sbjct: 7836 gtccattcttcaaatttggt 7817
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>gb|AY727731.1| Anopheles funestus isolate 442 NADH dehydrogenase subunit 5 (ND5)
           gene, partial cds; mitochondrial
          Length = 834

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 138 gtccattcttcaaatttggttaca 161
           ||||||||||||| ||||||||||
Sbjct: 469 gtccattcttcaactttggttaca 492
to top
>gb|AY727676.1| Anopheles funestus isolate 220 NADH dehydrogenase subunit 5 (ND5)
           gene, partial cds; mitochondrial
          Length = 834

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 138 gtccattcttcaaatttggttaca 161
           ||||||||||||| ||||||||||
Sbjct: 469 gtccattcttcaactttggttaca 492
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>gb|AY260164.1| Zea mays KNOTTED1 (kn1) gene, complete cds
          Length = 9369

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  gtccattcttcaaatttggt 157
            ||||||||||||||||||||
Sbjct: 5253 gtccattcttcaaatttggt 5234
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>gb|AY062209.1| Oryza sativa chitin-inducible gibberellin-responsive protein (CIGR1)
            mRNA, complete cds
          Length = 2104

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 199  tgagaactttattcacatcattgatttccaaattgctcaaggga 242
            |||||||  ||| ||||| |||||||| || |||||||||||||
Sbjct: 1051 tgagaacaatatccacataattgattttcagattgctcaaggga 1094
to top
>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0006G05
          Length = 56865

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 199   tgagaactttattcacatcattgatttccaaattgctcaaggga 242
             |||||||  ||| ||||| |||||||| || |||||||||||||
Sbjct: 11372 tgagaacaatatccacataattgattttcagattgctcaaggga 11415
to top
>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1582_D10
          Length = 103475

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 199    tgagaactttattcacatcattgatttccaaattgctcaaggga 242
              |||||||  ||| ||||| |||||||| || |||||||||||||
Sbjct: 102782 tgagaacaatatccacataattgattttcagattgctcaaggga 102825
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>dbj|AK069266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012G08, full
            insert sequence
          Length = 2162

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 199  tgagaactttattcacatcattgatttccaaattgctcaaggga 242
            |||||||  ||| ||||| |||||||| || |||||||||||||
Sbjct: 1061 tgagaacaatatccacataattgattttcagattgctcaaggga 1104
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>emb|AL772203.14| Mouse DNA sequence from clone RP23-398I1 on chromosome 4, complete
              sequence
          Length = 157996

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ttctctatgatatctgtcca 142
              ||||||||||||||||||||
Sbjct: 135771 ttctctatgatatctgtcca 135752
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>gb|DQ102955.1| Anopheles funestus KE52 from Kenya NADH dehydrogenase subunit 5
           (ND5) gene, partial cds; mitochondrial
          Length = 834

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 138 gtccattcttcaaatttggttaca 161
           ||||||||||||| ||||||||||
Sbjct: 469 gtccattcttcaactttggttaca 492
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>gb|DQ102952.1| Anopheles funestus KE31 from Kenya NADH dehydrogenase subunit 5
           (ND5) gene, partial cds; mitochondrial
          Length = 834

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 138 gtccattcttcaaatttggttaca 161
           ||||||||||||| ||||||||||
Sbjct: 469 gtccattcttcaactttggttaca 492


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,265,857
Number of Sequences: 3902068
Number of extensions: 2265857
Number of successful extensions: 39632
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39493
Number of HSP's gapped (non-prelim): 138
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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