ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdn12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 5e-81
2dbj|AK067359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 5e-81
3gb|BT018591.1| Zea mays clone EL01N0447E02.d mRNA sequence 165 2e-37
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
5dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
6gb|AC084666.1|CBRG47D14 Caenorhabditis briggsae cosmid G47D14, c... 44 0.45
7gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosom... 42 1.8
8emb|AL020995.14|HS117O3 Human DNA sequence from clone RP1-117O3 ... 42 1.8
9gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cance... 42 1.8
10dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
11gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cance... 42 1.8
12dbj|AP000903.6| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.8
13dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.8
14ref|NM_197614.1| Oryza sativa (japonica cultivar-group) hypothet... 40 7.1
15gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
16emb|AL596224.10| Human DNA sequence from clone RP11-26F12 on chr... 40 7.1
17ref|XM_776769.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.1
18emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in... 40 7.1
19gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 gen... 40 7.1
20emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in... 40 7.1
21gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 7.1
22emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in ... 40 7.1
23dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
25gb|AC127455.4| Homo sapiens chromosome 16 clone CTD-3057O21, com... 40 7.1
26gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 40 7.1
27gb|AC020955.6|AC020955 Homo sapiens chromosome 19 clone LLNLR-30... 40 7.1
28dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
29gb|AY514011.1| Manilkara huberi microsatellite Mh17 sequence 40 7.1
30gb|AC133539.2| Homo sapiens chromosome 16 clone GS1-21A4, comple... 40 7.1
31gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1

>dbj|AK104700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C05, full
           insert sequence
          Length = 1357

 Score =  309 bits (156), Expect = 5e-81
 Identities = 299/346 (86%), Gaps = 3/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 175 tcgacatgtcttgggcgccaatcgagaatgaccctggtgtttttacggagctgttgcaac 234
           ||||||||||||||||  ||||||||||||| |||||  ||||||| || ||||||||||
Sbjct: 225 tcgacatgtcttgggctgcaatcgagaatgatcctggcatttttactgaactgttgcaac 284

                                                                       
Query: 235 agttgcagttgaagggtctccaagttgatgaactctactcacttgatcttgatgccctaa 294
           || ||||  |||||||||| ||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 285 agatgcaactgaagggtcttcaagttgatgaactctattcactcgatctggatgccctca 344

                                                                       
Query: 295 atgatcttcagccaatttatgggcttatattattgtacaaatggcgacctccagaaaaag 354
           |||||||||||||| |||||||||| ||  |  |||||||||||| ||||||||||||||
Sbjct: 345 atgatcttcagccagtttatgggctcattgtgctgtacaaatggcaacctccagaaaaag 404

                                                                       
Query: 355 atgagcgccctgttatcaaggatgcggtcccaaatgtattctttgctaatcagataatta 414
           ||||||| ||   |||||||||  |  |||||||  | ||||||||||| ||||||||||
Sbjct: 405 atgagcgtcc---tatcaaggacccaatcccaaaccttttctttgctaagcagataatta 461

                                                                       
Query: 415 acagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttctggcatcaccc 474
           |||  |||||||| ||||||||||| ||||||||||| || |||||| | || |||||||
Sbjct: 462 acaatgcatgtgccacccaagctatcgtttctgttctattaaactctccgggtatcaccc 521

                                                         
Query: 475 ttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520
           |||| ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct: 522 ttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 567



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>dbj|AK067359.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099P19, full
           insert sequence
          Length = 1376

 Score =  309 bits (156), Expect = 5e-81
 Identities = 299/346 (86%), Gaps = 3/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 175 tcgacatgtcttgggcgccaatcgagaatgaccctggtgtttttacggagctgttgcaac 234
           ||||||||||||||||  ||||||||||||| |||||  ||||||| || ||||||||||
Sbjct: 222 tcgacatgtcttgggctgcaatcgagaatgatcctggcatttttactgaactgttgcaac 281

                                                                       
Query: 235 agttgcagttgaagggtctccaagttgatgaactctactcacttgatcttgatgccctaa 294
           || ||||  |||||||||| ||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 282 agatgcaactgaagggtcttcaagttgatgaactctattcactcgatctggatgccctca 341

                                                                       
Query: 295 atgatcttcagccaatttatgggcttatattattgtacaaatggcgacctccagaaaaag 354
           |||||||||||||| |||||||||| ||  |  |||||||||||| ||||||||||||||
Sbjct: 342 atgatcttcagccagtttatgggctcattgtgctgtacaaatggcaacctccagaaaaag 401

                                                                       
Query: 355 atgagcgccctgttatcaaggatgcggtcccaaatgtattctttgctaatcagataatta 414
           ||||||| ||   |||||||||  |  |||||||  | ||||||||||| ||||||||||
Sbjct: 402 atgagcgtcc---tatcaaggacccaatcccaaaccttttctttgctaagcagataatta 458

                                                                       
Query: 415 acagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttctggcatcaccc 474
           |||  |||||||| ||||||||||| ||||||||||| || |||||| | || |||||||
Sbjct: 459 acaatgcatgtgccacccaagctatcgtttctgttctattaaactctccgggtatcaccc 518

                                                         
Query: 475 ttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520
           |||| ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct: 519 ttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 564



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>gb|BT018591.1| Zea mays clone EL01N0447E02.d mRNA sequence
          Length = 1395

 Score =  165 bits (83), Expect = 2e-37
 Identities = 155/179 (86%)
 Strand = Plus / Plus

                                                                       
Query: 336 tggcgacctccagaaaaagatgagcgccctgttatcaaggatgcggtcccaaatgtattc 395
           ||||||||||||||||| |||||||| ||||| |||||||||||  |||||||  | |||
Sbjct: 9   tggcgacctccagaaaaggatgagcgtcctgtcatcaaggatgcaatcccaaaccttttc 68

                                                                       
Query: 396 tttgctaatcagataattaacagcgcatgtgcaacccaagctattgtttctgttctgttg 455
           ||||| || |||||||||||||  || || |||||||||||||| ||||| ||||| |||
Sbjct: 69  tttgccaaccagataattaacaaagcctgcgcaacccaagctatcgtttcggttctcttg 128

                                                                      
Query: 456 aactcttctggcatcacccttagcgaggacctcaaaaagctcaaggagtttgcaaagga 514
           |||||| ||||||| |||||||| || || || |||||||||||||| |||||||||||
Sbjct: 129 aactctcctggcattacccttagtgatgagcttaaaaagctcaaggaatttgcaaagga 187



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  127 bits (64), Expect = 4e-26
 Identities = 103/116 (88%)
 Strand = Plus / Minus

                                                                           
Query: 405     cagataattaacagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttct 464
               |||||||||||||  |||||||| ||||||||||| ||||||||||| || |||||| | 
Sbjct: 4455918 cagataattaacaatgcatgtgccacccaagctatcgtttctgttctattaaactctccg 4455859

                                                                       
Query: 465     ggcatcacccttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520
               || ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct: 4455858 ggtatcacccttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 4455803



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                               
Query: 258     gttgatgaactctactcacttgatcttgatgccctaaatgatcttcag 305
               |||||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct: 4456222 gttgatgaactctattcactcgatctggatgccctcaatgatcttcag 4456175



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                 
Query: 328     tgtacaaatggcgacctccagaaaaagatgagcg 361
               |||||||||||| |||||||||||||||||||||
Sbjct: 4456075 tgtacaaatggcaacctccagaaaaagatgagcg 4456042



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 175     tcgacatgtcttgggcgccaatcgagaatgaccctggt 212
               ||||||||||||||||  ||||||||||||| ||||||
Sbjct: 4457334 tcgacatgtcttgggctgcaatcgagaatgatcctggt 4457297



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 214     tttttacggagctgttgcaacagttgcagttgaagggtctccaagt 259
               ||||||| || |||||||||||| ||||  |||||||||| |||||
Sbjct: 4456609 tttttactgaactgttgcaacagatgcaactgaagggtcttcaagt 4456564



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 94       ctctctcctccccacccgcaa 114
                |||||||||||||||||||||
Sbjct: 18932894 ctctctcctccccacccgcaa 18932874



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 50      acgcgcctcgtcgccggcgccctccctg 77
               |||||||||| ||||| |||||||||||
Sbjct: 6179395 acgcgcctcgccgccgccgccctccctg 6179422



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>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544B02
          Length = 156339

 Score =  127 bits (64), Expect = 4e-26
 Identities = 103/116 (88%)
 Strand = Plus / Minus

                                                                          
Query: 405    cagataattaacagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttct 464
              |||||||||||||  |||||||| ||||||||||| ||||||||||| || |||||| | 
Sbjct: 139482 cagataattaacaatgcatgtgccacccaagctatcgtttctgttctattaaactctccg 139423

                                                                      
Query: 465    ggcatcacccttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520
              || ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct: 139422 ggtatcacccttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 139367



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 258    gttgatgaactctactcacttgatcttgatgccctaaatgatcttcag 305
              |||||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct: 139786 gttgatgaactctattcactcgatctggatgccctcaatgatcttcag 139739



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                
Query: 328    tgtacaaatggcgacctccagaaaaagatgagcg 361
              |||||||||||| |||||||||||||||||||||
Sbjct: 139639 tgtacaaatggcaacctccagaaaaagatgagcg 139606



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 175    tcgacatgtcttgggcgccaatcgagaatgaccctggt 212
              ||||||||||||||||  ||||||||||||| ||||||
Sbjct: 140898 tcgacatgtcttgggctgcaatcgagaatgatcctggt 140861



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 214    tttttacggagctgttgcaacagttgcagttgaagggtctccaagt 259
              ||||||| || |||||||||||| ||||  |||||||||| |||||
Sbjct: 140173 tttttactgaactgttgcaacagatgcaactgaagggtcttcaagt 140128



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>gb|AC084666.1|CBRG47D14 Caenorhabditis briggsae cosmid G47D14, complete sequence
          Length = 37034

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 309   atttatgggcttatattattgtacaaatgg 338
             ||||||||| ||||||||||||| ||||||
Sbjct: 10929 atttatggggttatattattgtataaatgg 10958



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>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence
          Length = 205463

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 226    tgttgcaacagttgcagttgaagggtctc 254
              |||||||  ||||||||||||||||||||
Sbjct: 138728 tgttgcacaagttgcagttgaagggtctc 138700



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>emb|AL020995.14|HS117O3 Human DNA sequence from clone RP1-117O3 on chromosome 1p33-34.3
             Contains the 3' end of a novel gene, the AK2 gene for
             adenylate kinase 2, the gene for ornithine
             decarboxylase-like (ODC-p) and a CpG island, complete
             sequence
          Length = 150997

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 439   ttgtttctgttctgttgaact 459
             |||||||||||||||||||||
Sbjct: 58111 ttgtttctgttctgttgaact 58131



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>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190237

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 226    tgttgcaacagttgcagttgaagggtctc 254
              |||||||  ||||||||||||||||||||
Sbjct: 144790 tgttgcacaagttgcagttgaagggtctc 144818



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>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461D06
          Length = 112895

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    ctctctcctccccacccgcaa 114
             |||||||||||||||||||||
Sbjct: 96427 ctctctcctccccacccgcaa 96407



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>gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205924

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 226    tgttgcaacagttgcagttgaagggtctc 254
              |||||||  ||||||||||||||||||||
Sbjct: 178708 tgttgcacaagttgcagttgaagggtctc 178736



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>dbj|AP000903.6| Homo sapiens genomic DNA, chromosome 11q clone:RP11-700I2, complete
              sequence
          Length = 119082

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    aatttatgggcttatattatt 328
              |||||||||||||||||||||
Sbjct: 114207 aatttatgggcttatattatt 114227



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>dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-861E23, complete
            sequence
          Length = 181946

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 308  aatttatgggcttatattatt 328
            |||||||||||||||||||||
Sbjct: 8190 aatttatgggcttatattatt 8210



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>ref|NM_197614.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0001O14.13), mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 157  aggtttgcagagggctcgtcgaca 180
            |||||||||||| |||||||||||
Sbjct: 1417 aggtttgcagagagctcgtcgaca 1440



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>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04,
              complete sequence
          Length = 133271

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     ctctctcctccccacccgca 113
              ||||||||||||||||||||
Sbjct: 104814 ctctctcctccccacccgca 104795



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>emb|AL596224.10| Human DNA sequence from clone RP11-26F12 on chromosome 1 Contains part
             of the CSMD2 gene for CUB and Sushi multiple domains 2,
             complete sequence
          Length = 114784

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   aaaaagctcaaggagtttgc 508
             ||||||||||||||||||||
Sbjct: 54737 aaaaagctcaaggagtttgc 54718



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>ref|XM_776769.1| PREDICTED: Strongylocentrotus purpuratus similar to ubiquitin
           carboxyl-terminal hydrolase L5 (predicted) (LOC576462),
           mRNA
          Length = 1561

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 393 ttctttgctaatcagataattaacagcgcatgtgcaacccaagc 436
           ||||||||||| ||| |||| ||||  |||||||| ||||||||
Sbjct: 220 ttctttgctaaacaggtaatcaacaatgcatgtgccacccaagc 263



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>emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in linkage group 5,
              complete sequence
          Length = 207800

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    aagctcaaggagtttgcaaa 511
              ||||||||||||||||||||
Sbjct: 142856 aagctcaaggagtttgcaaa 142837



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>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete
             sequence
          Length = 178022

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   aggtttgcagagggctcgtcgaca 180
             |||||||||||| |||||||||||
Sbjct: 66474 aggtttgcagagagctcgtcgaca 66451



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>emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in linkage group 16,
             complete sequence
          Length = 256605

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   ttgtttctgttctgttgaac 458
             ||||||||||||||||||||
Sbjct: 42072 ttgtttctgttctgttgaac 42091



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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 229     tgcaacagttgcagttgaag 248
               ||||||||||||||||||||
Sbjct: 1986621 tgcaacagttgcagttgaag 1986640



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>emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in linkage group 16,
             complete sequence
          Length = 191052

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   ttgtttctgttctgttgaac 458
             ||||||||||||||||||||
Sbjct: 47324 ttgtttctgttctgttgaac 47343



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 157      aggtttgcagagggctcgtcgaca 180
                |||||||||||| |||||||||||
Sbjct: 20804075 aggtttgcagagagctcgtcgaca 20804052



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      ctctctcctccccacccgca 113
               ||||||||||||||||||||
Sbjct: 2429214 ctctctcctccccacccgca 2429195



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>gb|AC127455.4| Homo sapiens chromosome 16 clone CTD-3057O21, complete sequence
          Length = 184641

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ccgctctctcctccccaccc 110
              ||||||||||||||||||||
Sbjct: 163147 ccgctctctcctccccaccc 163166



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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 221    ggagctgttgcaacagttgcagtt 244
              ||||||||||||||||||| ||||
Sbjct: 381631 ggagctgttgcaacagttgtagtt 381654



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>gb|AC020955.6|AC020955 Homo sapiens chromosome 19 clone LLNLR-300F9, complete sequence
          Length = 41589

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gctctctcctccccacccgc 112
             ||||||||||||||||||||
Sbjct: 34503 gctctctcctccccacccgc 34522



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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1006_A02
          Length = 175153

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 50     acgcgcctcgtcgccggcgccctccctg 77
              |||||||||| ||||| |||||||||||
Sbjct: 144877 acgcgcctcgccgccgccgccctccctg 144904



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>gb|AY514011.1| Manilkara huberi microsatellite Mh17 sequence
          Length = 380

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  agcgtccccgctctctcctc 103
           ||||||||||||||||||||
Sbjct: 241 agcgtccccgctctctcctc 260



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>gb|AC133539.2| Homo sapiens chromosome 16 clone GS1-21A4, complete sequence
          Length = 108508

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ccgctctctcctccccaccc 110
             ||||||||||||||||||||
Sbjct: 22807 ccgctctctcctccccaccc 22826



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 157      aggtttgcagagggctcgtcgaca 180
                |||||||||||| |||||||||||
Sbjct: 20815339 aggtttgcagagagctcgtcgaca 20815316


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,383,083
Number of Sequences: 3902068
Number of extensions: 4383083
Number of successful extensions: 87624
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87254
Number of HSP's gapped (non-prelim): 366
length of query: 524
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 501
effective length of database: 17,143,297,704
effective search space: 8588792149704
effective search space used: 8588792149704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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