Clone Name | basdn12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK104700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C05, full insert sequence Length = 1357 Score = 309 bits (156), Expect = 5e-81 Identities = 299/346 (86%), Gaps = 3/346 (0%) Strand = Plus / Plus Query: 175 tcgacatgtcttgggcgccaatcgagaatgaccctggtgtttttacggagctgttgcaac 234 |||||||||||||||| ||||||||||||| ||||| ||||||| || |||||||||| Sbjct: 225 tcgacatgtcttgggctgcaatcgagaatgatcctggcatttttactgaactgttgcaac 284 Query: 235 agttgcagttgaagggtctccaagttgatgaactctactcacttgatcttgatgccctaa 294 || |||| |||||||||| ||||||||||||||||| ||||| ||||| |||||||| | Sbjct: 285 agatgcaactgaagggtcttcaagttgatgaactctattcactcgatctggatgccctca 344 Query: 295 atgatcttcagccaatttatgggcttatattattgtacaaatggcgacctccagaaaaag 354 |||||||||||||| |||||||||| || | |||||||||||| |||||||||||||| Sbjct: 345 atgatcttcagccagtttatgggctcattgtgctgtacaaatggcaacctccagaaaaag 404 Query: 355 atgagcgccctgttatcaaggatgcggtcccaaatgtattctttgctaatcagataatta 414 ||||||| || ||||||||| | ||||||| | ||||||||||| |||||||||| Sbjct: 405 atgagcgtcc---tatcaaggacccaatcccaaaccttttctttgctaagcagataatta 461 Query: 415 acagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttctggcatcaccc 474 ||| |||||||| ||||||||||| ||||||||||| || |||||| | || ||||||| Sbjct: 462 acaatgcatgtgccacccaagctatcgtttctgttctattaaactctccgggtatcaccc 521 Query: 475 ttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520 |||| ||||| ||||||||||| |||||||||||||||||| |||| Sbjct: 522 ttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 567
>dbj|AK067359.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099P19, full insert sequence Length = 1376 Score = 309 bits (156), Expect = 5e-81 Identities = 299/346 (86%), Gaps = 3/346 (0%) Strand = Plus / Plus Query: 175 tcgacatgtcttgggcgccaatcgagaatgaccctggtgtttttacggagctgttgcaac 234 |||||||||||||||| ||||||||||||| ||||| ||||||| || |||||||||| Sbjct: 222 tcgacatgtcttgggctgcaatcgagaatgatcctggcatttttactgaactgttgcaac 281 Query: 235 agttgcagttgaagggtctccaagttgatgaactctactcacttgatcttgatgccctaa 294 || |||| |||||||||| ||||||||||||||||| ||||| ||||| |||||||| | Sbjct: 282 agatgcaactgaagggtcttcaagttgatgaactctattcactcgatctggatgccctca 341 Query: 295 atgatcttcagccaatttatgggcttatattattgtacaaatggcgacctccagaaaaag 354 |||||||||||||| |||||||||| || | |||||||||||| |||||||||||||| Sbjct: 342 atgatcttcagccagtttatgggctcattgtgctgtacaaatggcaacctccagaaaaag 401 Query: 355 atgagcgccctgttatcaaggatgcggtcccaaatgtattctttgctaatcagataatta 414 ||||||| || ||||||||| | ||||||| | ||||||||||| |||||||||| Sbjct: 402 atgagcgtcc---tatcaaggacccaatcccaaaccttttctttgctaagcagataatta 458 Query: 415 acagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttctggcatcaccc 474 ||| |||||||| ||||||||||| ||||||||||| || |||||| | || ||||||| Sbjct: 459 acaatgcatgtgccacccaagctatcgtttctgttctattaaactctccgggtatcaccc 518 Query: 475 ttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520 |||| ||||| ||||||||||| |||||||||||||||||| |||| Sbjct: 519 ttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 564
>gb|BT018591.1| Zea mays clone EL01N0447E02.d mRNA sequence Length = 1395 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Plus Query: 336 tggcgacctccagaaaaagatgagcgccctgttatcaaggatgcggtcccaaatgtattc 395 ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||| | ||| Sbjct: 9 tggcgacctccagaaaaggatgagcgtcctgtcatcaaggatgcaatcccaaaccttttc 68 Query: 396 tttgctaatcagataattaacagcgcatgtgcaacccaagctattgtttctgttctgttg 455 ||||| || ||||||||||||| || || |||||||||||||| ||||| ||||| ||| Sbjct: 69 tttgccaaccagataattaacaaagcctgcgcaacccaagctatcgtttcggttctcttg 128 Query: 456 aactcttctggcatcacccttagcgaggacctcaaaaagctcaaggagtttgcaaagga 514 |||||| ||||||| |||||||| || || || |||||||||||||| ||||||||||| Sbjct: 129 aactctcctggcattacccttagtgatgagcttaaaaagctcaaggaatttgcaaagga 187
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 127 bits (64), Expect = 4e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 405 cagataattaacagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttct 464 ||||||||||||| |||||||| ||||||||||| ||||||||||| || |||||| | Sbjct: 4455918 cagataattaacaatgcatgtgccacccaagctatcgtttctgttctattaaactctccg 4455859 Query: 465 ggcatcacccttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520 || ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||| Sbjct: 4455858 ggtatcacccttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 4455803 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 258 gttgatgaactctactcacttgatcttgatgccctaaatgatcttcag 305 |||||||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 4456222 gttgatgaactctattcactcgatctggatgccctcaatgatcttcag 4456175 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 328 tgtacaaatggcgacctccagaaaaagatgagcg 361 |||||||||||| ||||||||||||||||||||| Sbjct: 4456075 tgtacaaatggcaacctccagaaaaagatgagcg 4456042 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 175 tcgacatgtcttgggcgccaatcgagaatgaccctggt 212 |||||||||||||||| ||||||||||||| |||||| Sbjct: 4457334 tcgacatgtcttgggctgcaatcgagaatgatcctggt 4457297 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Minus Query: 214 tttttacggagctgttgcaacagttgcagttgaagggtctccaagt 259 ||||||| || |||||||||||| |||| |||||||||| ||||| Sbjct: 4456609 tttttactgaactgttgcaacagatgcaactgaagggtcttcaagt 4456564 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 ctctctcctccccacccgcaa 114 ||||||||||||||||||||| Sbjct: 18932894 ctctctcctccccacccgcaa 18932874 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 50 acgcgcctcgtcgccggcgccctccctg 77 |||||||||| ||||| ||||||||||| Sbjct: 6179395 acgcgcctcgccgccgccgccctccctg 6179422
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 127 bits (64), Expect = 4e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 405 cagataattaacagcgcatgtgcaacccaagctattgtttctgttctgttgaactcttct 464 ||||||||||||| |||||||| ||||||||||| ||||||||||| || |||||| | Sbjct: 139482 cagataattaacaatgcatgtgccacccaagctatcgtttctgttctattaaactctccg 139423 Query: 465 ggcatcacccttagcgaggacctcaaaaagctcaaggagtttgcaaaggacatgcc 520 || ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||| Sbjct: 139422 ggtatcacccttagtgaggagctcaaaaagctaaaggagtttgcaaaggacttgcc 139367 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 258 gttgatgaactctactcacttgatcttgatgccctaaatgatcttcag 305 |||||||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 139786 gttgatgaactctattcactcgatctggatgccctcaatgatcttcag 139739 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 328 tgtacaaatggcgacctccagaaaaagatgagcg 361 |||||||||||| ||||||||||||||||||||| Sbjct: 139639 tgtacaaatggcaacctccagaaaaagatgagcg 139606 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 175 tcgacatgtcttgggcgccaatcgagaatgaccctggt 212 |||||||||||||||| ||||||||||||| |||||| Sbjct: 140898 tcgacatgtcttgggctgcaatcgagaatgatcctggt 140861 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Minus Query: 214 tttttacggagctgttgcaacagttgcagttgaagggtctccaagt 259 ||||||| || |||||||||||| |||| |||||||||| ||||| Sbjct: 140173 tttttactgaactgttgcaacagatgcaactgaagggtcttcaagt 140128
>gb|AC084666.1|CBRG47D14 Caenorhabditis briggsae cosmid G47D14, complete sequence Length = 37034 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 309 atttatgggcttatattattgtacaaatgg 338 ||||||||| ||||||||||||| |||||| Sbjct: 10929 atttatggggttatattattgtataaatgg 10958
>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence Length = 205463 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 226 tgttgcaacagttgcagttgaagggtctc 254 ||||||| |||||||||||||||||||| Sbjct: 138728 tgttgcacaagttgcagttgaagggtctc 138700
>emb|AL020995.14|HS117O3 Human DNA sequence from clone RP1-117O3 on chromosome 1p33-34.3 Contains the 3' end of a novel gene, the AK2 gene for adenylate kinase 2, the gene for ornithine decarboxylase-like (ODC-p) and a CpG island, complete sequence Length = 150997 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 ttgtttctgttctgttgaact 459 ||||||||||||||||||||| Sbjct: 58111 ttgtttctgttctgttgaact 58131
>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190237 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 226 tgttgcaacagttgcagttgaagggtctc 254 ||||||| |||||||||||||||||||| Sbjct: 144790 tgttgcacaagttgcagttgaagggtctc 144818
>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461D06 Length = 112895 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 ctctctcctccccacccgcaa 114 ||||||||||||||||||||| Sbjct: 96427 ctctctcctccccacccgcaa 96407
>gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205924 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 226 tgttgcaacagttgcagttgaagggtctc 254 ||||||| |||||||||||||||||||| Sbjct: 178708 tgttgcacaagttgcagttgaagggtctc 178736
>dbj|AP000903.6| Homo sapiens genomic DNA, chromosome 11q clone:RP11-700I2, complete sequence Length = 119082 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 aatttatgggcttatattatt 328 ||||||||||||||||||||| Sbjct: 114207 aatttatgggcttatattatt 114227
>dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-861E23, complete sequence Length = 181946 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 aatttatgggcttatattatt 328 ||||||||||||||||||||| Sbjct: 8190 aatttatgggcttatattatt 8210
>ref|NM_197614.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0001O14.13), mRNA Length = 1500 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 aggtttgcagagggctcgtcgaca 180 |||||||||||| ||||||||||| Sbjct: 1417 aggtttgcagagagctcgtcgaca 1440
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04, complete sequence Length = 133271 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ctctctcctccccacccgca 113 |||||||||||||||||||| Sbjct: 104814 ctctctcctccccacccgca 104795
>emb|AL596224.10| Human DNA sequence from clone RP11-26F12 on chromosome 1 Contains part of the CSMD2 gene for CUB and Sushi multiple domains 2, complete sequence Length = 114784 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 aaaaagctcaaggagtttgc 508 |||||||||||||||||||| Sbjct: 54737 aaaaagctcaaggagtttgc 54718
>ref|XM_776769.1| PREDICTED: Strongylocentrotus purpuratus similar to ubiquitin carboxyl-terminal hydrolase L5 (predicted) (LOC576462), mRNA Length = 1561 Score = 40.1 bits (20), Expect = 7.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 393 ttctttgctaatcagataattaacagcgcatgtgcaacccaagc 436 ||||||||||| ||| |||| |||| |||||||| |||||||| Sbjct: 220 ttctttgctaaacaggtaatcaacaatgcatgtgccacccaagc 263
>emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in linkage group 5, complete sequence Length = 207800 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 aagctcaaggagtttgcaaa 511 |||||||||||||||||||| Sbjct: 142856 aagctcaaggagtttgcaaa 142837
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 aggtttgcagagggctcgtcgaca 180 |||||||||||| ||||||||||| Sbjct: 66474 aggtttgcagagagctcgtcgaca 66451
>emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in linkage group 16, complete sequence Length = 256605 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 ttgtttctgttctgttgaac 458 |||||||||||||||||||| Sbjct: 42072 ttgtttctgttctgttgaac 42091
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 tgcaacagttgcagttgaag 248 |||||||||||||||||||| Sbjct: 1986621 tgcaacagttgcagttgaag 1986640
>emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in linkage group 16, complete sequence Length = 191052 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 ttgtttctgttctgttgaac 458 |||||||||||||||||||| Sbjct: 47324 ttgtttctgttctgttgaac 47343
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 aggtttgcagagggctcgtcgaca 180 |||||||||||| ||||||||||| Sbjct: 20804075 aggtttgcagagagctcgtcgaca 20804052
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ctctctcctccccacccgca 113 |||||||||||||||||||| Sbjct: 2429214 ctctctcctccccacccgca 2429195
>gb|AC127455.4| Homo sapiens chromosome 16 clone CTD-3057O21, complete sequence Length = 184641 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccgctctctcctccccaccc 110 |||||||||||||||||||| Sbjct: 163147 ccgctctctcctccccaccc 163166
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 ggagctgttgcaacagttgcagtt 244 ||||||||||||||||||| |||| Sbjct: 381631 ggagctgttgcaacagttgtagtt 381654
>gb|AC020955.6|AC020955 Homo sapiens chromosome 19 clone LLNLR-300F9, complete sequence Length = 41589 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gctctctcctccccacccgc 112 |||||||||||||||||||| Sbjct: 34503 gctctctcctccccacccgc 34522
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 50 acgcgcctcgtcgccggcgccctccctg 77 |||||||||| ||||| ||||||||||| Sbjct: 144877 acgcgcctcgccgccgccgccctccctg 144904
>gb|AY514011.1| Manilkara huberi microsatellite Mh17 sequence Length = 380 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 agcgtccccgctctctcctc 103 |||||||||||||||||||| Sbjct: 241 agcgtccccgctctctcctc 260
>gb|AC133539.2| Homo sapiens chromosome 16 clone GS1-21A4, complete sequence Length = 108508 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccgctctctcctccccaccc 110 |||||||||||||||||||| Sbjct: 22807 ccgctctctcctccccaccc 22826
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 aggtttgcagagggctcgtcgaca 180 |||||||||||| ||||||||||| Sbjct: 20815339 aggtttgcagagagctcgtcgaca 20815316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,383,083 Number of Sequences: 3902068 Number of extensions: 4383083 Number of successful extensions: 87624 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87254 Number of HSP's gapped (non-prelim): 366 length of query: 524 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 501 effective length of database: 17,143,297,704 effective search space: 8588792149704 effective search space used: 8588792149704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)