ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basdb03 | 601 | AV925844 | not_full | gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein (wrsi5-1) mRNA, complete cds Length = 608 | 44 | not_full | IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor Length = 102 | 8 | -- | --- | - | -- | --- | - |
| basdb02 | 642 | AV925843 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basdb01 | 680 | AV925842 | full | dbj|D01000.1|RICSODB Oryza sativa mRNA for copper/zinc-superoxide dismutase, complete cds, clone:RSODB Length = 667 | 500 | full | SODC4_MAIZE (P23345) Superoxide dismutase [Cu-Zn] 4A (EC 1.15.1.1) Length = 151 | 221 | -- | --- | - | -- | --- | - |
| basda24 | 518 | AV925841 | full | ref|NM_187552.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 | 61 | not_full | SEY1_ASHGO (Q74ZD5) Protein SEY1 Length = 791 | 22 | -- | --- | - | -- | --- | - |
| basda23 | 444 | AV925840 | not_full | emb|AJ290421.1|HVU290421 Hordeum vulgare mRNA for BAX inhibitor 1 (pBI-1 gene) Length = 744 | 500 | not_full | BI1_ORYSA (Q9MBD8) Bax inhibitor 1 (BI-1) (OsBI-1) Length = 249 | 27 | -- | --- | - | -- | --- | - |
| basda22 | 607 | AV925839 | not_full | ref|XM_468319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1524 | 248 | not_full | TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily member 6B precursor (Decoy receptor for Fas ligand) (Decoy receptor 3) (DcR3) (M68) Length = 300 | 6 | -- | --- | - | -- | --- | - |
| basda21 | 612 | AV925838 | not_full | dbj|D01000.1|RICSODB Oryza sativa mRNA for copper/zinc-superoxide dismutase, complete cds, clone:RSODB Length = 667 | 252 | not_full | SODC2_MAIZE (P11428) Superoxide dismutase [Cu-Zn] 2 (EC 1.15.1.1) Length = 150 | 190 | -- | --- | - | -- | --- | - |
| basda19 | 387 | AV925837 | not_full | ref|NM_202054.1| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome AT1G07770 (RPS15A) transcript variant AT1G07770.2 mRNA, complete cds Length = 651 | 451 | not_full | RS15A_DAUCA (Q9AT34) 40S ribosomal protein S15a Length = 129 | 60 | -- | --- | - | -- | --- | - |
| basda18 | 438 | AV925836 | not_full | gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 | 500 | not_full | DNAJ_SYNPX (Q7UA76) Chaperone protein dnaJ Length = 377 | 247 | -- | --- | - | -- | --- | - |
| basda17 | 462 | AV925835 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basda16 | 609 | AV925834 | not_full | emb|AJ222779.1|HVJ222779 Hordeum vulgare mRNA for hypothetical protein (ORF1), clone RG49 Length = 765 | 91 | not_full | RRP3_HORVU (O48609) Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) Length = 181 | 31 | -- | --- | - | -- | --- | - |
| basda15 | 389 | AV925833 | not_full | gb|U48692.1|TAU48692 Triticum aestivum calmodulin TaCaM2-3 mRNA, complete cds Length = 909 | 500 | not_full | CALM_ORYSA (P29612) Calmodulin (CaM) Length = 148 | 500 | -- | --- | - | -- | --- | - |
| basda10 | 625 | AV925832 | not_full | emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 | 426 | full | RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 | 167 | -- | --- | - | -- | --- | - |
| basda09 | 441 | AV925831 | not_full | gb|BT009601.1| Triticum aestivum clone wre1n.pk0079.c6:fis, full insert mRNA sequence Length = 1462 | 23 | full | DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2) (DNA methyltransferase homolog MmuIIP) (DNA MTase homolog MmuIIP) (M.MmuIIP) (Met-2) Length = 415 | 41 | -- | --- | - | -- | --- | - |
| basda08 | 629 | AV925830 | not_full | dbj|AK121844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101G01, full insert sequence Length = 924 | 82 | not_full | KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-associated protein 15.1) Length = 136 | 3 | -- | --- | - | -- | --- | - |
| basda07 | 484 | AV925829 | not_full | dbj|AK121844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101G01, full insert sequence Length = 924 | 69 | not_full | HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72) Length = 644 | 4 | -- | --- | - | -- | --- | - |
| basda06 | 490 | AV925828 | not_full | gb|AY107575.1| Zea mays PCO083849 mRNA sequence Length = 727 | 500 | not_full | GIDB_RHOPA (Q6ND16) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited division protein B) Length = 223 | 3 | -- | --- | - | -- | --- | - |
| basda05 | 500 | AV925827 | not_full | gb|AY107575.1| Zea mays PCO083849 mRNA sequence Length = 727 | 500 | not_full | GIDB_RHOPA (Q6ND16) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited division protein B) Length = 223 | 3 | -- | --- | - | -- | --- | - |
| basda04 | 587 | AV925826 | not_full | gb|U48692.1|TAU48692 Triticum aestivum calmodulin TaCaM2-3 mRNA, complete cds Length = 909 | 500 | not_full | CALM_CAPAN (P93087) Calmodulin (CaM) Length = 148 | 500 | -- | --- | - | -- | --- | - |
| basda03 | 601 | AV925825 | not_full | gb|U48692.1|TAU48692 Triticum aestivum calmodulin TaCaM2-3 mRNA, complete cds Length = 909 | 500 | full | CALM_CAPAN (P93087) Calmodulin (CaM) Length = 148 | 500 | -- | --- | - | -- | --- | - |
| basda02 | 540 | AV925824 | not_full | ref|NM_191221.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2739 | 89 | not_full | TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) (TPP) (Trehalose synthase complex catalytic subunit TPS2) Length = 896 | 37 | -- | --- | - | -- | --- | - |
| basda01 | 522 | AV925823 | full | dbj|D01000.1|RICSODB Oryza sativa mRNA for copper/zinc-superoxide dismutase, complete cds, clone:RSODB Length = 667 | 500 | not_full | SODC4_MAIZE (P23345) Superoxide dismutase [Cu-Zn] 4A (EC 1.15.1.1) Length = 151 | 225 | -- | --- | - | -- | --- | - |
| basd3p24 | 431 | AV923148 | not_full | gb|AF475123.1| Triticum aestivum acidic ribosomal protein P2a-2 mRNA, partial cds Length = 339 | 272 | not_full | YHZ3_SCHPO (P40923) Putative homeobox protein C21B10.13c in chromosome II Length = 201 | 2 | -- | --- | - | -- | --- | - |
| basd3p23 | 544 | AV923147 | not_full | emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 | 404 | not_full | RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 | 162 | -- | --- | - | -- | --- | - |
| basd3p22 | 81 | AV923146 | not_full | emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on chromosome 9 Contains the 5NULL end of the MAPKAP1 gene for mitogen-activated protein kinase associated protein 1, a novel gene, the 5NULL end of the PBX3 gene for pre-B-cell leukemia transcription f | 13 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3p21 | 575 | AV923145 | not_full | gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 | 432 | not_full | SO1A4_RAT (O35913) Solute carrier organic anion transporter family member 1A4 (Solute carrier family 21 member 5) (Sodium-independent organic anion-transporting polypeptide 2) (Brain digoxin carrier protein) (Brain-specific organic anion transporter) (OA | 1 | -- | --- | - | -- | --- | - |
| basd3p20 | 642 | AV923144 | not_full | ref|XM_493811.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 | 367 | not_full | G3PB_PEA (P12859) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) Length = 451 | 246 | -- | --- | - | -- | --- | - |
| basd3p19 | 663 | AV923143 | full | ref|XM_472247.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1278 | 110 | not_full | KING1_ARATH (Q8LBB2) SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1) Length = 424 | 2 | -- | --- | - | -- | --- | - |
| basd3p18 | 560 | AV836297 | not_full | ref|NM_185175.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1335 | 59 | not_full | PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium response protein 1) Length = 427 | 23 | -- | --- | - | -- | --- | - |
| basd3p17 | 551 | AV923142 | not_full | dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 | 54 | not_full | IF3X_DICDI (O15818) Putative eukaryotic translation initiation factor 3 subunit (eIF-3) Length = 1321 | 11 | -- | --- | - | -- | --- | - |
| basd3p16 | 494 | AV923141 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | POF13_SCHPO (O94334) F-box protein pof13 Length = 396 | 5 | -- | --- | - | -- | --- | - |
| basd3p14 | 568 | AV923140 | full | ref|XM_479108.1| Oryza sativa (japonica cultivar-group), mRNA Length = 243 | 58 | not_full | RUXG_ARATH (O82221) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG) Length = 80 | 71 | -- | --- | - | -- | --- | - |
| basd3p11 | 69 | AV923139 | not_full | gb|AY105494.1| Zea mays PCO138455 mRNA sequence Length = 1377 | 11 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3p10 | 479 | AV923138 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basd3p09 | 263 | AV836296 | full | ref|XM_473352.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 | 16 | not_full | PKSM_BACSU (P40872) Putative polyketide synthase pksM Length = 4262 | 7 | -- | --- | - | -- | --- | - |
| basd3p08 | 570 | AV923137 | not_full | ref|XM_463995.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1046 | 49 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3p07 | 603 | AV923136 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 230 | not_full | RK14_WHEAT (Q95H51) Chloroplast 50S ribosomal protein L14 Length = 123 | 173 | -- | --- | - | -- | --- | - |
| basd3p04 | 452 | AV923135 | not_full | gb|AY691640.1| Stenostachys laevis ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast Length = 1347 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basd3p03 | 543 | AV923134 | not_full | ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1439 | 120 | not_full | GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 | 58 | -- | --- | - | -- | --- | - |
| basd3p02 | 560 | AV923133 | not_full | ref|XM_478504.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2093 | 94 | not_full | ACEA_RICCO (P15479) Isocitrate lyase (EC 4.1.3.1) (Isocitrase) (Isocitratase) (ICL) Length = 576 | 55 | -- | --- | - | -- | --- | - |
| basd3o24 | 327 | AV923132 | not_full | gb|AY691640.1| Stenostachys laevis ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast Length = 1347 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basd3o23 | 488 | AV923131 | not_full | ref|XM_470212.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 | 65 | not_full | RAB18_RAT (Q5EB77) Ras-related protein Rab-18 Length = 206 | 336 | -- | --- | - | -- | --- | - |
| basd3o22 | 580 | AV923130 | not_full | dbj|AK066993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F02, full insert sequence Length = 3411 | 129 | not_full | UBC5_ARATH (P42749) Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC 6.3.2.19) (Ubiquitin-protein ligase 5) (Ubiquitin carrier protein 5) Length = 185 | 179 | -- | --- | - | -- | --- | - |
| basd3o21 | 528 | AV923129 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basd3o20 | 553 | AV923128 | not_full | gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA, complete cds Length = 853 | 260 | not_full | TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein 2.2) (OsTIP2.2) Length = 248 | 196 | -- | --- | - | -- | --- | - |
| basd3o19 | 647 | AV923127 | not_full | ref|XM_483754.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1516 | 500 | not_full | IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 313 | 63 | -- | --- | - | -- | --- | - |
| basd3o18 | 602 | AV836295 | not_full | ref|NM_193801.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1149 | 168 | not_full | MAGD1_MOUSE (Q9QYH6) Melanoma-associated antigen D1 (MAGE-D1 antigen) (Neurotrophin receptor-interacting MAGE homolog) (Dlxin-1) Length = 775 | 50 | -- | --- | - | -- | --- | - |
| basd3o14 | 562 | AV923126 | not_full | dbj|AK071238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085B09, full insert sequence Length = 1035 | 66 | not_full | SPC18_MOUSE (Q9R0P6) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-) (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) (Sid 2895) Length = 179 | 30 | -- | --- | - | -- | --- | - |
| basd3o13 | 549 | AV836294 | not_full | ref|XM_479599.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1995 | 76 | not_full | ABF1_STRCX (P82593) Alpha-N-arabinofuranosidase 1 precursor (EC 3.2.1.55) (Alpha-N-arabinofuranosidase I) (Arabinosidase I) (Alpha-N-AFase I) Length = 825 | 21 | -- | --- | - | -- | --- | - |
| basd3o11 | 586 | AV923125 | not_full | ref|XM_481260.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1385 | 47 | not_full | TSN2_MOUSE (Q922J6) Tetraspanin-2 (Tspan-2) Length = 221 | 62 | -- | --- | - | -- | --- | - |
