ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3o13 |
|---|---|
| Clone Library Name | barley_pub |
>ABF1_STRCX (P82593) Alpha-N-arabinofuranosidase 1 precursor (EC 3.2.1.55)| (Alpha-N-arabinofuranosidase I) (Arabinosidase I) (Alpha-N-AFase I) Length = 825 Score = 127 bits (320), Expect = 2e-29 Identities = 75/191 (39%), Positives = 108/191 (56%), Gaps = 17/191 (8%) Frame = +2 Query: 5 NSRLQLTTTKSGIVWFDQVSLMPSDTYMG--HGYRKDLASMLANLKPKFLKFPGGNYV-- 172 ++R +L + D VSL P DTY +G RKDLA +A L P F++FPGG V Sbjct: 192 SNRGRLAVAANDAAALDMVSLFPRDTYRNQQNGLRKDLAEKIAALHPGFVRFPGGCLVNT 251 Query: 173 --MGNYLL-------NAFRWSETVGPWEERPGHFNDVWGYWTDDGLGFFEFLQLAEDLGA 325 M +Y +++W +TVGP EER + N WGY GLG++E+ + +ED+GA Sbjct: 252 GSMEDYSAASGWQRKRSYQWKDTVGPVEERATNAN-FWGYNQSYGLGYYEYFRFSEDIGA 310 Query: 326 CPVWVVN---DGASRYEQVSS-ATIAAFVKDVVDSIEFARGDPGTSWGSVRAAMGHPEPF 493 P+ VV G + + V A + ++D +D IEFA G + WG VRA MGHP PF Sbjct: 311 MPLPVVPALVTGCGQNKAVDDEALLKRHIQDTLDLIEFANGPATSKWGKVRAEMGHPRPF 370 Query: 494 QLNYISMGNQE 526 +L ++ +GN+E Sbjct: 371 RLTHLEVGNEE 381
>ABFA_ASPNG (P42254) Alpha-N-arabinofuranosidase A precursor (EC 3.2.1.55)| (Arabinosidase A) (ABF A) Length = 628 Score = 108 bits (270), Expect = 1e-23 Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%) Frame = +2 Query: 92 HGYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETVGPWEERPGHFNDVWGYWT 271 +G + LA++L ++K FL+FPGGN + GN N ++W+ET+G +RPG W Y+ Sbjct: 222 NGLKPQLANVLDDMKGSFLRFPGGNNLEGNSAENRWKWNETIGDLCDRPGR-EGTWTYYN 280 Query: 272 DDGLGFFEFLQLAEDLGACPVWVVNDG----ASRYEQVSSATIAAFVKDVVDSIEFARGD 439 DGLG E+ EDLG PV V DG + ++ + ++ DV++ +E+ GD Sbjct: 281 TDGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPLTGDALTPYIDDVLNELEYILGD 340 Query: 440 PGTSWGSVRAAMGHPEPFQLNYISMGNQE 526 T++G+ RAA G EP+ L + +GN++ Sbjct: 341 TSTTYGAWRAANGQEEPWNLTMVEIGNED 369
>ABFA_BACHD (Q9KBR4) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (Arabinosidase)| Length = 500 Score = 63.9 bits (154), Expect = 3e-10 Identities = 36/143 (25%), Positives = 66/143 (46%) Frame = +2 Query: 95 GYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETVGPWEERPGHFNDVWGYWTD 274 G+RKD+ ++ L+ +++PGGN+V G + W + VGP ERP + W Sbjct: 50 GFRKDVIRLVQELQVPLVRYPGGNFVSG------YNWEDGVGPVSERPKRLDLAWRTTET 103 Query: 275 DGLGFFEFLQLAEDLGACPVWVVNDGASRYEQVSSATIAAFVKDVVDSIEFARGDPGTSW 454 + +G EF+ A+ +GA VN G+ + + +E+ G+ W Sbjct: 104 NEIGTNEFVDWAKKVGAEVNMAVNLGSRGVDAARNL------------VEYCNHPSGSYW 151 Query: 455 GSVRAAMGHPEPFQLNYISMGNQ 523 +R + G+ +P + +GN+ Sbjct: 152 SDLRISHGYKDPHNIKTWCLGNE 174
>ABF2_BACOV (Q59219) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase| 2) Length = 514 Score = 63.5 bits (153), Expect = 4e-10 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 1/163 (0%) Frame = +2 Query: 38 GIVWFDQVSLMPSDTYMGHGYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETV 217 G +W + S +P+ GYR D+ + L +L L++PGG + + + W + + Sbjct: 55 GGLWVGENSDIPNIK----GYRTDVFNALKDLSVPVLRWPGGCFA------DEYHWMDGI 104 Query: 218 GPWEERPGHFNDVWGYWTDD-GLGFFEFLQLAEDLGACPVWVVNDGASRYEQVSSATIAA 394 GP E RP N+ WG +D G EFL L E LG P N G+ E+++ Sbjct: 105 GPKENRPKMVNNNWGGTIEDNSFGTHEFLNLCEMLGCEPYVSGNVGSGTVEELAK----- 159 Query: 395 FVKDVVDSIEFARGDPGTSWGSVRAAMGHPEPFQLNYISMGNQ 523 +E+ D + ++R G + ++L Y+ +GN+ Sbjct: 160 -------WVEYMTSDGDSPMANLRRKNGRDKAWKLKYLGVGNE 195
>ABFA_BACST (Q9XBQ3) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (Arabinosidase)| Length = 501 Score = 63.2 bits (152), Expect = 5e-10 Identities = 36/144 (25%), Positives = 68/144 (47%) Frame = +2 Query: 92 HGYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETVGPWEERPGHFNDVWGYWT 271 +G+R+D+ ++ L+ +++PGGN+V G + W + VGP E+RP + W Sbjct: 49 NGFRQDVIELVKELQVPIIRYPGGNFVSG------YNWEDGVGPKEQRPRRLDLAWKSVE 102 Query: 272 DDGLGFFEFLQLAEDLGACPVWVVNDGASRYEQVSSATIAAFVKDVVDSIEFARGDPGTS 451 + +G EF+ A+ +GA VN G + + +E+ G+ Sbjct: 103 TNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNL------------VEYCNHPSGSY 150 Query: 452 WGSVRAAMGHPEPFQLNYISMGNQ 523 + +R A G+ EP ++ +GN+ Sbjct: 151 YSDLRIAHGYKEPHKIKTWCLGNE 174
>ABFA_STRLI (P53627) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (Arabinosidase)| (ABF) (Alpha-L-AF) Length = 662 Score = 62.0 bits (149), Expect = 1e-09 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 2/145 (1%) Frame = +2 Query: 95 GYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETVGPWEERPGHFNDVWGYWTD 274 G R+D+ ++ L +++PGGN+V G ++W ++VGP E+RP + W Sbjct: 49 GLRQDVLELVRELGVTAVRYPGGNFVSG------YKWEDSVGPVEDRPRRLDLAWRSTET 102 Query: 275 DGLGFFEFLQLAEDLG--ACPVWVVNDGASRYEQVSSATIAAFVKDVVDSIEFARGDPGT 448 + G E++ + +G A P+ VN G V + ++ E+A GT Sbjct: 103 NRFGLSEYIAFLKKIGPQAEPMMAVNLGTRG------------VAEALELQEYANHPSGT 150 Query: 449 SWGSVRAAMGHPEPFQLNYISMGNQ 523 + +RA G +PF + +GN+ Sbjct: 151 ALSDLRAEHGDKDPFGIRLWCLGNE 175
>ABFA_BACSU (P94531) Alpha-N-arabinofuranosidase 1 (EC 3.2.1.55) (Arabinosidase| 1) Length = 500 Score = 60.8 bits (146), Expect = 2e-09 Identities = 34/143 (23%), Positives = 64/143 (44%) Frame = +2 Query: 95 GYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETVGPWEERPGHFNDVWGYWTD 274 G+RKD+ S++ L+ +++PGGN++ G + W + VGP E RP + W Sbjct: 49 GFRKDVQSLIKELQVPIIRYPGGNFLSG------YNWEDGVGPVENRPRRLDLAWQTTET 102 Query: 275 DGLGFFEFLQLAEDLGACPVWVVNDGASRYEQVSSATIAAFVKDVVDSIEFARGDPGTSW 454 + +G EFL + + VN G + + +E+ G+ W Sbjct: 103 NEVGTNEFLSWPKKVNTEVNMAVNLGTRGIDAARNL------------VEYCNHPKGSYW 150 Query: 455 GSVRAAMGHPEPFQLNYISMGNQ 523 +R + G+ +P+ + +GN+ Sbjct: 151 SDLRRSHGYEQPYGIKTWCLGNE 173
>ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase| 2) Length = 495 Score = 50.8 bits (120), Expect = 2e-06 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 1/145 (0%) Frame = +2 Query: 92 HGYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETVGPWEERPGHFNDVWGYWT 271 +G RKD+ L L L++PGG + + + W+ VG +R N WG Sbjct: 49 NGIRKDVLEALKQLHIPVLRWPGGCFA------DEYHWANGVG---DRKTMLNTHWGGTI 99 Query: 272 DDG-LGFFEFLQLAEDLGACPVWVVNDGASRYEQVSSATIAAFVKDVVDSIEFARGDPGT 448 + G EF+ L E L P N G+ +++S + ++ + F G P + Sbjct: 100 ESNEFGTHEFMMLCELLECEPYICGNVGSGTVQEMS---------EWIEYMTFEEGTPMS 150 Query: 449 SWGSVRAAMGHPEPFQLNYISMGNQ 523 W R G EP++L Y +GN+ Sbjct: 151 DW---RKQNGREEPWKLKYFGVGNE 172
>TAT_HV2SB (P12453) TAT protein (Transactivating regulatory protein)| Length = 130 Score = 31.2 bits (69), Expect = 2.0 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = +1 Query: 379 CHNSCFCKGCC 411 C+N CFCKGCC Sbjct: 50 CNNKCFCKGCC 60
>PURA_XANC5 (Q3BWF4) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 430 Score = 30.4 bits (67), Expect = 3.4 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = +2 Query: 188 LNAFRWSETVGPWEERPGHFNDVWGY--WTDDGLGFFEFLQLAEDLGACPVWVVNDGASR 361 L+A W E + E PG + G W D +L+ E+L CP+ +V+ G R Sbjct: 360 LDAQGWEECTPVYLEFPGWSENTHGITVWDDLPPAARAYLRALEELAGCPISIVSTGPDR 419
>PURA_XANAC (Q8PNB5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 430 Score = 30.4 bits (67), Expect = 3.4 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = +2 Query: 188 LNAFRWSETVGPWEERPGHFNDVWGY--WTDDGLGFFEFLQLAEDLGACPVWVVNDGASR 361 L+A W E + E PG + G W D +L+ E+L CP+ +V+ G R Sbjct: 360 LDAQGWEECTPVYLEFPGWSENTHGITVWDDLPPAARAYLRALEELAGCPISIVSTGPDR 419
>Y1555_STAHJ (Q4L661) UPF0078 membrane protein SH1555| Length = 202 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 44 VWFDQVSLMPSDTYMGHGYRKDLASMLANLKPKFLKFPGGNYV 172 +WF + P T+ HG L ++L ++ P +L+F GG V Sbjct: 72 IWFPVHADGPLSTFFTHGLIVGLFAILGHVYPIYLRFKGGKAV 114
>Y4217_RHOPA (Q6N233) Hypothetical UPF0337 protein RPA4217| Length = 66 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +2 Query: 203 WSETVGPWEERPGHFNDVWGYWTDDGLGFFE 295 W+ G W++ G+ + WG TDD L E Sbjct: 3 WNRVEGNWKQFKGNVKEKWGKLTDDDLDVIE 33
>TPSD1_ABIGR (O81086) Alpha-bisabolene synthase (EC 4.2.3.-)| ((E)-alpha-bisabolene synthase) (AgfEabis) Length = 817 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Frame = +2 Query: 98 YRKDLASMLANLKPKFLKFPGGNYV------MGNYLLNAFRWSETVGPWEER 235 + KD+ASML + L FPG N + YL A SET W + Sbjct: 387 FNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNK 438
>MCRB_METFE (P12972) Methyl-coenzyme M reductase beta subunit (EC 2.8.4.1)| (Coenzyme-B sulfoethylthiotransferase beta) Length = 438 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 320 GACPVWVVNDGASRYEQVSSATIAAFVKDVVDSIEFARGDPGTSWG 457 G +VN GA+R Q S+TI + D+ IEF RG PG +G Sbjct: 309 GLVAATIVNQGAARAAQGVSSTIL-YDNDI---IEFERGLPGVDFG 350
>TRYM_CANFA (P19236) Mastin precursor (EC 3.4.21.-) (Mast cell protease 3)| (MCP-3) (dMCP-3) (DMP) (Mastocytoma protease) Length = 280 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +2 Query: 446 TSWGSVRAAMGHPEPFQLNYISM---GNQECSMHY 541 T WG + P P+ L + + GN+EC+ HY Sbjct: 164 TGWGDIADHTPLPPPYHLQEVEVPIVGNRECNCHY 198
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Frame = +2 Query: 29 TKSGIVWFDQVSLMPSDTYMGHGYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWS 208 +KSGI++F+Q L+P + G +S ++ P G+ +LN Sbjct: 3185 SKSGIMYFEQAPLLPPQSVGGTAATAAGSSTISQDTSHLTSGPVSALASGSSVLNVVSMQ 3244 Query: 209 ETVGPWEER--PGH 244 T P PGH Sbjct: 3245 TTAAPTSSTSVPGH 3258
>CP51_CANTR (P14263) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)| (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) Length = 528 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +2 Query: 146 LKFPGGNYVM--GNYLLNAFRWSETVGPWEERPGHFN 250 L+ P YV+ G+Y+L + ++ T W E P HFN Sbjct: 387 LRVPNTKYVIPKGHYVLVSAGYAHTSDRWFEHPEHFN 423
>TRYB1_MOUSE (Q02844) Tryptase precursor (EC 3.4.21.59) (Mast cell protease 7)| (MMCP-7) (Tryptase alpha/beta-1) Length = 273 Score = 28.9 bits (63), Expect = 10.0 Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 11/181 (6%) Frame = +2 Query: 38 GIVWFDQVSLMPSDTYMGHGYRKDLASMLANLKPKFLKFPGGNYVMGNYLLNAFRWSETV 217 G W QVSL +DTY H F GG+ + ++L A + V Sbjct: 37 GNKWPWQVSLRANDTYWMH-------------------FCGGSLIHPQWVLTA---AHCV 74 Query: 218 GPWEERPGHFNDVWGYWTDDGLGFFEFLQLAEDLGACP-VWVVNDGA--SRYEQVSSATI 388 GP P N V L + + L + P ++V DGA + + + I Sbjct: 75 GPDVADP---NKVRVQLRKQYLYYHDHLMTVSQIITHPDFYIVQDGADIALLKLTNPVNI 131 Query: 389 AAFVKDVV---DSIEFARGDPG--TSWGSVRAAMGHPEPFQLNYIS---MGNQECSMHYY 544 + +V V S F G T WG++ + P PF L + + N C + Y+ Sbjct: 132 SDYVHPVPLPPASETFPSGTLCWVTGWGNIDNGVNLPPPFPLKEVQVPIIENHLCDLKYH 191 Query: 545 K 547 K Sbjct: 192 K 192
>SPL15_ARATH (Q9M2Q6) Squamosa promoter-binding-like protein 15| Length = 354 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 Query: 389 AAFVKDVVDSIEFARGDPGTSWGSVRAAMGHPEPFQLN 502 AA +K V+ GDP T+W + R+ M P P+Q+N Sbjct: 157 AAMIKSVL-------GDP-TAWSTARSVMQRPGPWQIN 186
>Y4724_AGRT5 (Q8U6T2) Hypothetical UPF0337 protein Atu4724/AGR_L_317| Length = 67 Score = 28.9 bits (63), Expect = 10.0 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +2 Query: 203 WSETVGPWEERPGHFNDVWGYWTDDGL 283 W+ G W++ G + WG TDD L Sbjct: 3 WNRVEGNWKQMKGKVKEQWGKLTDDDL 29 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,445,919 Number of Sequences: 219361 Number of extensions: 1751534 Number of successful extensions: 4111 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3983 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4089 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
