ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3p17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 182 8e-43
2dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic D... 182 8e-43
3dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D... 182 8e-43
4ref|XM_477727.1| Oryza sativa (japonica cultivar-group), mRNA 96 1e-16
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
7dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
8ref|XM_474099.1| Oryza sativa (japonica cultivar-group), predic... 54 5e-04
9dbj|AK072140.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
10ref|NM_101398.3| Arabidopsis thaliana unknown protein AT1G15290 ... 52 0.002
11gb|AC007591.2|F9L1 Arabidopsis thaliana chromosome 1 BAC F9L1 se... 50 0.008
12ref|NM_118947.2| Arabidopsis thaliana unknown protein AT4G28080 ... 48 0.031
13emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 48 0.031
14emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BA... 48 0.031
15gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete se... 46 0.12
16gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete se... 46 0.12
17emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4,... 44 0.48
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
19emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.48
20emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 44 0.48
21emb|AL589823.10| Human DNA sequence from clone RP11-341A22 on ch... 42 1.9
22emb|BX088714.18| Zebrafish DNA sequence from clone DKEY-16F19 in... 42 1.9
23emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in l... 42 1.9
24emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.9
25gb|AC134893.4| Mus musculus BAC clone RP24-251N8 from 9, complet... 42 1.9
26gb|AC123743.11| Mus musculus chromosome 5, clone RP24-116M4, com... 40 7.5
27gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 7.5
28gb|AF050740.1| Plasmodium falciparum variant-specific surface pr... 40 7.5
29gb|AC140291.2| Mus musculus BAC clone RP24-326N12 from chromosom... 40 7.5
30gb|AC163013.2| Mus musculus chromosome 8, clone RP24-362N13, com... 40 7.5
31gb|AC159271.4| Mus musculus BAC clone RP23-409N21 from chromosom... 40 7.5
32gb|AC131782.3| Mus musculus BAC clone RP24-361A10 from chromosom... 40 7.5
33gb|AC092174.5| Homo sapiens BAC clone RP13-522B14 from 7, comple... 40 7.5
34emb|CR318627.19| Zebrafish DNA sequence from clone DKEYP-97F4 in... 40 7.5
35gb|AC140436.3| Mus musculus BAC clone RP23-85O2 from chromosome ... 40 7.5
36gb|AC122344.3| Mus musculus BAC clone RP23-364M19 from chromosom... 40 7.5
37gb|AC124352.2| Mus musculus BAC clone RP24-477C23 from chromosom... 40 7.5
38emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on ch... 40 7.5
39emb|AL035073.7|HS997O15 Human DNA sequence from clone RP5-997O15... 40 7.5
40gb|AC112532.5| Rattus norvegicus 9 BAC CH230-20N15 (Children's H... 40 7.5
41emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, stra... 40 7.5
42gb|AC162948.4| Mus musculus BAC clone RP23-14N2 from chromosome ... 40 7.5
43emb|AL606996.3|OSJN00123 Oryza sativa genomic DNA, chromosome 4,... 40 7.5
44emb|CR352228.11| Zebrafish DNA sequence from clone CH211-104F13 ... 40 7.5
45gb|AC023503.23| Homo sapiens 3 BAC RP11-217I10 (Roswell Park Can... 40 7.5
46emb|BX537275.8| Zebrafish DNA sequence from clone DKEYP-120E12 i... 40 7.5
47gb|AC102555.11| Mus musculus chromosome 8, clone RP23-163N19, co... 40 7.5
48gb|AF274856.3| Homo sapiens chromosome X clone RP11-1007I13 map ... 40 7.5
49gb|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana... 40 7.5
50gb|AC117440.5| Homo sapiens 3 BAC RP11-575C1 (Roswell Park Cance... 40 7.5
51dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 7.5
52emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4,... 40 7.5
53emb|AL935040.6| Zebrafish DNA sequence from clone CH211-176L21, ... 40 7.5
54emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequence BAC R-1... 40 7.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  182 bits (92), Expect = 8e-43
 Identities = 185/216 (85%)
 Strand = Plus / Minus

                                                                           
Query: 330     ggttgagctttctgataagctcccgcacatacagtcactgtgtatacacgagatggtagt 389
               |||||||||| ||||||||||||| || ||||| ||  |||||||||| || ||||||||
Sbjct: 8814457 ggttgagcttgctgataagctcccacatatacaatccttgtgtatacatgaaatggtagt 8814398

                                                                           
Query: 390     tcgagcatttaagcacatagttcgtgcagttattgcatctgtcgatgatataaatgacat 449
               |||||||||||||||| || |||| || |||||| || ||||  ||||||||||||||||
Sbjct: 8814397 tcgagcatttaagcacgtacttcgggctgttatttcagctgttcatgatataaatgacat 8814338

                                                                           
Query: 450     ggctcaatcagttgcatcatgtttaaatatattgctgggaccatttccagaagaaaataa 509
               |||| |    |||||||||||||| ||||| ||  |||||||||||||||||||||||||
Sbjct: 8814337 ggctgaggtggttgcatcatgtttgaatatcttattgggaccatttccagaagaaaataa 8814278

                                                   
Query: 510     tgatggcaagtgcggagaggatcataatctcaggca 545
                ||||||||||||   |||||| | |||||||||||
Sbjct: 8814277 cgatggcaagtgctatgaggataacaatctcaggca 8814242



 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                           
Query: 228     ggtagcagactttggctcacttgagctttcccctgttgatggaaggacattgacagattt 287
               ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8814697 ggtagcagattttggttcacttgagctttcccctgttgatggaaggacattgacagattt 8814638

                                                            
Query: 288     catgcacaccagaggcctccagatgcgctcactgggacaagtggt 332
                ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 8814637 tatgcacaccaggggactccagatgcgctcactaggacaagtggt 8814593



 Score =  113 bits (57), Expect = 6e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                           
Query: 9       tgcatccacaaaagatagtacttcgttaaatacaaatgatgcacattcagacaccactgc 68
               ||||||||||||||| | |||||||  ||||||||||||||| ||  ||| || | || |
Sbjct: 8815369 tgcatccacaaaagaaaatacttcgacaaatacaaatgatgcgcaaacagtcaactcttc 8815310

                                                                           
Query: 69      gagtacaaaggaggataaagaggctattctgcagaaagcgctaacagaagctgctttcca 128
                || |||||||||||||| ||||| ||||| |||| |  |||  ||||||||||||||||
Sbjct: 8815309 cagcacaaaggaggataatgaggcaattctacagagatggcttccagaagctgctttcca 8815250

                                                    
Query: 129     aagactaaaagaatctgagactggacttcatgctaag 165
                |||||||| |||||||| |||||||| |||||||||
Sbjct: 8815249 gagactaaaggaatctgaaactggactgcatgctaag 8815213



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                           
Query: 172     gatgaattgattgagatggcatacaaatattatgatgatactgccctgccaaaattggta 231
               |||||||| |||||||||||  ||||||||||||||||||| || |||||||||||||||
Sbjct: 8814847 gatgaattaattgagatggcgcacaaatattatgatgatacagctctgccaaaattggta 8814788
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>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0613F08
          Length = 142937

 Score =  182 bits (92), Expect = 8e-43
 Identities = 185/216 (85%)
 Strand = Plus / Minus

                                                                         
Query: 330   ggttgagctttctgataagctcccgcacatacagtcactgtgtatacacgagatggtagt 389
             |||||||||| ||||||||||||| || ||||| ||  |||||||||| || ||||||||
Sbjct: 19475 ggttgagcttgctgataagctcccacatatacaatccttgtgtatacatgaaatggtagt 19416

                                                                         
Query: 390   tcgagcatttaagcacatagttcgtgcagttattgcatctgtcgatgatataaatgacat 449
             |||||||||||||||| || |||| || |||||| || ||||  ||||||||||||||||
Sbjct: 19415 tcgagcatttaagcacgtacttcgggctgttatttcagctgttcatgatataaatgacat 19356

                                                                         
Query: 450   ggctcaatcagttgcatcatgtttaaatatattgctgggaccatttccagaagaaaataa 509
             |||| |    |||||||||||||| ||||| ||  |||||||||||||||||||||||||
Sbjct: 19355 ggctgaggtggttgcatcatgtttgaatatcttattgggaccatttccagaagaaaataa 19296

                                                 
Query: 510   tgatggcaagtgcggagaggatcataatctcaggca 545
              ||||||||||||   |||||| | |||||||||||
Sbjct: 19295 cgatggcaagtgctatgaggataacaatctcaggca 19260



 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                         
Query: 228   ggtagcagactttggctcacttgagctttcccctgttgatggaaggacattgacagattt 287
             ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19715 ggtagcagattttggttcacttgagctttcccctgttgatggaaggacattgacagattt 19656

                                                          
Query: 288   catgcacaccagaggcctccagatgcgctcactgggacaagtggt 332
              ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 19655 tatgcacaccaggggactccagatgcgctcactaggacaagtggt 19611



 Score =  113 bits (57), Expect = 6e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                         
Query: 9     tgcatccacaaaagatagtacttcgttaaatacaaatgatgcacattcagacaccactgc 68
             ||||||||||||||| | |||||||  ||||||||||||||| ||  ||| || | || |
Sbjct: 20387 tgcatccacaaaagaaaatacttcgacaaatacaaatgatgcgcaaacagtcaactcttc 20328

                                                                         
Query: 69    gagtacaaaggaggataaagaggctattctgcagaaagcgctaacagaagctgctttcca 128
              || |||||||||||||| ||||| ||||| |||| |  |||  ||||||||||||||||
Sbjct: 20327 cagcacaaaggaggataatgaggcaattctacagagatggcttccagaagctgctttcca 20268

                                                  
Query: 129   aagactaaaagaatctgagactggacttcatgctaag 165
              |||||||| |||||||| |||||||| |||||||||
Sbjct: 20267 gagactaaaggaatctgaaactggactgcatgctaag 20231



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                         
Query: 172   gatgaattgattgagatggcatacaaatattatgatgatactgccctgccaaaattggta 231
             |||||||| |||||||||||  ||||||||||||||||||| || |||||||||||||||
Sbjct: 19865 gatgaattaattgagatggcgcacaaatattatgatgatacagctctgccaaaattggta 19806
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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0052K15
          Length = 156250

 Score =  182 bits (92), Expect = 8e-43
 Identities = 185/216 (85%)
 Strand = Plus / Minus

                                                                          
Query: 330    ggttgagctttctgataagctcccgcacatacagtcactgtgtatacacgagatggtagt 389
              |||||||||| ||||||||||||| || ||||| ||  |||||||||| || ||||||||
Sbjct: 113536 ggttgagcttgctgataagctcccacatatacaatccttgtgtatacatgaaatggtagt 113477

                                                                          
Query: 390    tcgagcatttaagcacatagttcgtgcagttattgcatctgtcgatgatataaatgacat 449
              |||||||||||||||| || |||| || |||||| || ||||  ||||||||||||||||
Sbjct: 113476 tcgagcatttaagcacgtacttcgggctgttatttcagctgttcatgatataaatgacat 113417

                                                                          
Query: 450    ggctcaatcagttgcatcatgtttaaatatattgctgggaccatttccagaagaaaataa 509
              |||| |    |||||||||||||| ||||| ||  |||||||||||||||||||||||||
Sbjct: 113416 ggctgaggtggttgcatcatgtttgaatatcttattgggaccatttccagaagaaaataa 113357

                                                  
Query: 510    tgatggcaagtgcggagaggatcataatctcaggca 545
               ||||||||||||   |||||| | |||||||||||
Sbjct: 113356 cgatggcaagtgctatgaggataacaatctcaggca 113321



 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                          
Query: 228    ggtagcagactttggctcacttgagctttcccctgttgatggaaggacattgacagattt 287
              ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113776 ggtagcagattttggttcacttgagctttcccctgttgatggaaggacattgacagattt 113717

                                                           
Query: 288    catgcacaccagaggcctccagatgcgctcactgggacaagtggt 332
               ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 113716 tatgcacaccaggggactccagatgcgctcactaggacaagtggt 113672



 Score =  113 bits (57), Expect = 6e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                          
Query: 9      tgcatccacaaaagatagtacttcgttaaatacaaatgatgcacattcagacaccactgc 68
              ||||||||||||||| | |||||||  ||||||||||||||| ||  ||| || | || |
Sbjct: 114448 tgcatccacaaaagaaaatacttcgacaaatacaaatgatgcgcaaacagtcaactcttc 114389

                                                                          
Query: 69     gagtacaaaggaggataaagaggctattctgcagaaagcgctaacagaagctgctttcca 128
               || |||||||||||||| ||||| ||||| |||| |  |||  ||||||||||||||||
Sbjct: 114388 cagcacaaaggaggataatgaggcaattctacagagatggcttccagaagctgctttcca 114329

                                                   
Query: 129    aagactaaaagaatctgagactggacttcatgctaag 165
               |||||||| |||||||| |||||||| |||||||||
Sbjct: 114328 gagactaaaggaatctgaaactggactgcatgctaag 114292



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 172    gatgaattgattgagatggcatacaaatattatgatgatactgccctgccaaaattggta 231
              |||||||| |||||||||||  ||||||||||||||||||| || |||||||||||||||
Sbjct: 113926 gatgaattaattgagatggcgcacaaatattatgatgatacagctctgccaaaattggta 113867
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>ref|XM_477727.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5802

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 105/124 (84%)
 Strand = Plus / Plus

                                                                        
Query: 227  tggtagcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatt 286
            |||| ||||| ||||| || || || ||||| ||||||||||| ||||| ||||||||||
Sbjct: 2225 tggttgcagattttggttccctggaactttcacctgttgatggtaggaccttgacagatt 2284

                                                                        
Query: 287  tcatgcacaccagaggcctccagatgcgctcactgggacaagtggttgagctttctgata 346
            ||||||| ||||||||||| |||||||| || || |||||||| ||  ||||||| || |
Sbjct: 2285 tcatgcataccagaggcctacagatgcgttcccttggacaagttgtcaagctttcggaga 2344

                
Query: 347  agct 350
            ||||
Sbjct: 2345 agct 2348
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                            
Query: 232      gcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatg 291
                ||||| ||||| || || || ||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 13542582 gcagattttggttccctggaactttcacctgttgatggtaggaccttgacagatttcatg 13542641

                                                      
Query: 292      cacaccagaggcctccagatgcgctcactgggacaagt 329
                || ||||||||||| |||||||| || || ||||||||
Sbjct: 13542642 cataccagaggcctacagatgcgttcccttggacaagt 13542679
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>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1123E10
          Length = 134641

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                          
Query: 232    gcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatg 291
              ||||| ||||| || || || ||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 122265 gcagattttggttccctggaactttcacctgttgatggtaggaccttgacagatttcatg 122324

                                                    
Query: 292    cacaccagaggcctccagatgcgctcactgggacaagt 329
              || ||||||||||| |||||||| || || ||||||||
Sbjct: 122325 cataccagaggcctacagatgcgttcccttggacaagt 122362
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>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0084P08
          Length = 158656

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 232   gcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatg 291
             ||||| ||||| || || || ||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 10201 gcagattttggttccctggaactttcacctgttgatggtaggaccttgacagatttcatg 10260

                                                   
Query: 292   cacaccagaggcctccagatgcgctcactgggacaagt 329
             || ||||||||||| |||||||| || || ||||||||
Sbjct: 10261 cataccagaggcctacagatgcgttcccttggacaagt 10298
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>ref|XM_474099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5163

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                        
Query: 202  tatgatgatactgccctgccaaaattggtagcagactttggctcacttgagctttcccct 261
            |||||||||||||| || |||||  |||| || || ||||  || ||||| ||||| |||
Sbjct: 2104 tatgatgatactgcgcttccaaagctggtggctgattttgcttcccttgaactttctcct 2163

                                               
Query: 262  gttgatggaaggacattgacagatttcatgcacac 296
            || |||||||| ||  |||| ||||||||||||||
Sbjct: 2164 gtggatggaagaaccatgaccgatttcatgcacac 2198



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 397  tttaagcacatagttcgtgcagttattgcatctgtcgatga 437
            ||||||||||| ||||| || ||||||||| |||| |||||
Sbjct: 2299 tttaagcacattgttcgagctgttattgcagctgttgatga 2339
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>dbj|AK072140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122D02, full
            insert sequence
          Length = 3637

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                        
Query: 202  tatgatgatactgccctgccaaaattggtagcagactttggctcacttgagctttcccct 261
            |||||||||||||| || |||||  |||| || || ||||  || ||||| ||||| |||
Sbjct: 2139 tatgatgatactgcgcttccaaagctggtggctgattttgcttcccttgaactttctcct 2198

                                               
Query: 262  gttgatggaaggacattgacagatttcatgcacac 296
            || |||||||| ||  |||| ||||||||||||||
Sbjct: 2199 gtggatggaagaaccatgaccgatttcatgcacac 2233



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 397  tttaagcacatagttcgtgcagttattgcatctgtcgatga 437
            ||||||||||| ||||| || ||||||||| |||| |||||
Sbjct: 2334 tttaagcacattgttcgagctgttattgcagctgttgatga 2374
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>ref|NM_101398.3| Arabidopsis thaliana unknown protein AT1G15290 mRNA, complete cds
          Length = 5147

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 125/158 (79%)
 Strand = Plus / Plus

                                                                        
Query: 227  tggtagcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatt 286
            |||||||||| || || ||||| |||||||| || ||||||||  | || ||||| ||||
Sbjct: 2042 tggtagcagatttcgggtcactggagctttctccagttgatggtcgcactttgactgatt 2101

                                                                        
Query: 287  tcatgcacaccagaggcctccagatgcgctcactgggacaagtggttgagctttctgata 346
            ||||||| |  ||||| ||||| ||||| || || ||||| |||| | | ||| |||| |
Sbjct: 2102 tcatgcatataagaggactccaaatgcgttctctaggacatgtggctaaacttgctgaga 2161

                                                  
Query: 347  agctcccgcacatacagtcactgtgtatacacgagatg 384
            | || || || |||||||| || ||||| || ||||||
Sbjct: 2162 aacttcctcatatacagtccctctgtattcatgagatg 2199
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>gb|AC007591.2|F9L1 Arabidopsis thaliana chromosome 1 BAC F9L1 sequence, complete sequence
          Length = 141984

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 85/105 (80%)
 Strand = Plus / Minus

                                                                         
Query: 228   ggtagcagactttggctcacttgagctttcccctgttgatggaaggacattgacagattt 287
             ||||||||| || || ||||| |||||||| || ||||||||  | || ||||| |||||
Sbjct: 77067 ggtagcagatttcgggtcactggagctttctccagttgatggtcgcactttgactgattt 77008

                                                          
Query: 288   catgcacaccagaggcctccagatgcgctcactgggacaagtggt 332
             |||||| |  ||||| ||||| ||||| || || ||||| |||||
Sbjct: 77007 catgcatataagaggactccaaatgcgttctctaggacatgtggt 76963
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>ref|NM_118947.2| Arabidopsis thaliana unknown protein AT4G28080 mRNA, complete cds
          Length = 5813

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 232  gcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatg 291
            ||||||||||| || ||||| || || || || |||||||| ||  ||||||| || |||
Sbjct: 2112 gcagactttggatctcttgaactctcacccgtcgatggaagaactctgacagactttatg 2171

                        
Query: 292  cacaccagaggc 303
            ||||||||||||
Sbjct: 2172 cacaccagaggc 2183
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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                         
Query: 232   gcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatg 291
             ||||||||||| || ||||| || || || || |||||||| ||  ||||||| || |||
Sbjct: 69794 gcagactttggatctcttgaactctcacccgtcgatggaagaactctgacagactttatg 69735

                         
Query: 292   cacaccagaggc 303
             ||||||||||||
Sbjct: 69734 cacaccagaggc 69723
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>emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project)
          Length = 83693

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                         
Query: 232   gcagactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatg 291
             ||||||||||| || ||||| || || || || |||||||| ||  ||||||| || |||
Sbjct: 64658 gcagactttggatctcttgaactctcacccgtcgatggaagaactctgacagactttatg 64599

                         
Query: 292   cacaccagaggc 303
             ||||||||||||
Sbjct: 64598 cacaccagaggc 64587
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>gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete sequence
          Length = 127018

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 235   gactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatgca 293
             |||||||| |||||||| ||||| |||||||||||  | ||| | || |||||||||||
Sbjct: 49628 gactttggatcacttgaactttctcctgttgatggtcgtacacttactgatttcatgca 49570
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>gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete sequence
          Length = 125303

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 235   gactttggctcacttgagctttcccctgttgatggaaggacattgacagatttcatgca 293
             |||||||| |||||||| ||||| |||||||||||  | ||| | || |||||||||||
Sbjct: 77390 gactttggatcacttgaactttctcctgttgatggtcgtacacttactgatttcatgca 77448
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>emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070O11,
             complete sequence
          Length = 134231

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 247   cttgagctttcccctgttgatggaaggacattgacagatttcatgcacac 296
             ||||| ||||| ||||| |||||||| ||  |||| ||||||||||||||
Sbjct: 19571 cttgaactttctcctgtggatggaagaaccatgaccgatttcatgcacac 19620



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 397   tttaagcacatagttcgtgcagttattgcatctgtcgatga 437
             ||||||||||| ||||| || ||||||||| |||| |||||
Sbjct: 19810 tttaagcacattgttcgagctgttattgcagctgttgatga 19850
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 247      cttgagctttcccctgttgatggaaggacattgacagatttcatgcacac 296
                ||||| ||||| ||||| |||||||| ||  |||| ||||||||||||||
Sbjct: 32876722 cttgaactttctcctgtggatggaagaaccatgaccgatttcatgcacac 32876771



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 397      tttaagcacatagttcgtgcagttattgcatctgtcgatga 437
                ||||||||||| ||||| || ||||||||| |||| |||||
Sbjct: 32876961 tttaagcacattgttcgagctgttattgcagctgttgatga 32877001



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     ctgctttccaaagactaaaa 138
               ||||||||||||||||||||
Sbjct: 8544376 ctgctttccaaagactaaaa 8544395
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>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 247   cttgagctttcccctgttgatggaaggacattgacagatttcatgcacac 296
             ||||| ||||| ||||| |||||||| ||  |||| ||||||||||||||
Sbjct: 72104 cttgaactttctcctgtggatggaagaaccatgactgatttcatgcacac 72153



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 397   tttaagcacatagttcgtgcagttattgcatctgtcgatga 437
             ||||||||||| ||||| || ||||||||| |||| |||||
Sbjct: 72343 tttaagcacattgttcgagctgttattgcagctgttgatga 72383
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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
              complete sequence
          Length = 142556

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 247    cttgagctttcccctgttgatggaaggacattgacagatttcatgcacac 296
              ||||| ||||| ||||| |||||||| ||  |||| ||||||||||||||
Sbjct: 139009 cttgaactttctcctgtggatggaagaaccatgaccgatttcatgcacac 139058



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 397    tttaagcacatagttcgtgcagttattgcatctgtcgatga 437
              ||||||||||| ||||| || ||||||||| |||| |||||
Sbjct: 139248 tttaagcacattgttcgagctgttattgcagctgttgatga 139288
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>emb|AL589823.10| Human DNA sequence from clone RP11-341A22 on chromosome 9 Contains a
             pseudogene similar to part of NADH dehydrogenase 5 (MTND5)
             and the 3' end of a novel gene, complete sequence
          Length = 184470

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 488   gaccatttccagaagaaaata 508
             |||||||||||||||||||||
Sbjct: 45153 gaccatttccagaagaaaata 45173
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>emb|BX088714.18| Zebrafish DNA sequence from clone DKEY-16F19 in linkage group 18,
              complete sequence
          Length = 167148

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 42     aaatgatgcacattcagacac 62
              |||||||||||||||||||||
Sbjct: 135135 aaatgatgcacattcagacac 135115
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>emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in linkage group 18,
             complete sequence
          Length = 207501

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    aaatgatgcacattcagacac 62
             |||||||||||||||||||||
Sbjct: 80034 aaatgatgcacattcagacac 80054
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>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08,
           complete sequence
          Length = 123337

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 397 tttaagcacatagttcgtgcagttattgcatctgtcgatga 437
           ||||||||||| ||||| || ||||||||| |||| |||||
Sbjct: 52  tttaagcacattgttcgagctgttattgcagctgttgatga 92
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>gb|AC134893.4| Mus musculus BAC clone RP24-251N8 from 9, complete sequence
          Length = 166674

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   tttccaaagactaaaagaatc 143
             |||||||||||||||||||||
Sbjct: 49381 tttccaaagactaaaagaatc 49361
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>gb|AC123743.11| Mus musculus chromosome 5, clone RP24-116M4, complete sequence
          Length = 177350

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   tttccagaagaaaataatga 512
             ||||||||||||||||||||
Sbjct: 43908 tttccagaagaaaataatga 43927
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 504     aaataatgatggcaagtgcg 523
               ||||||||||||||||||||
Sbjct: 1779545 aaataatgatggcaagtgcg 1779564
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>gb|AF050740.1| Plasmodium falciparum variant-specific surface protein (varph17)
            gene, partial cds
          Length = 9419

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 500  aagaaaataatgatggcaag 519
            ||||||||||||||||||||
Sbjct: 4824 aagaaaataatgatggcaag 4843
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>gb|AC140291.2| Mus musculus BAC clone RP24-326N12 from chromosome 5, complete sequence
          Length = 167269

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   tttccagaagaaaataatga 512
             ||||||||||||||||||||
Sbjct: 35064 tttccagaagaaaataatga 35045
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>gb|AC163013.2| Mus musculus chromosome 8, clone RP24-362N13, complete sequence
          Length = 115582

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   agcatttaagcacatagttc 412
             ||||||||||||||||||||
Sbjct: 45260 agcatttaagcacatagttc 45241
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>gb|AC159271.4| Mus musculus BAC clone RP23-409N21 from chromosome 12, complete sequence
          Length = 202949

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 493    tttccagaagaaaataatga 512
              ||||||||||||||||||||
Sbjct: 170761 tttccagaagaaaataatga 170780
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>gb|AC131782.3| Mus musculus BAC clone RP24-361A10 from chromosome 12, complete
             sequence
          Length = 160872

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   tttccagaagaaaataatga 512
             ||||||||||||||||||||
Sbjct: 94752 tttccagaagaaaataatga 94733
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>gb|AC092174.5| Homo sapiens BAC clone RP13-522B14 from 7, complete sequence
          Length = 158187

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gatgcacattcagacaccac 65
             ||||||||||||||||||||
Sbjct: 14194 gatgcacattcagacaccac 14213
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>emb|CR318627.19| Zebrafish DNA sequence from clone DKEYP-97F4 in linkage group 23,
              complete sequence
          Length = 176131

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      ggaaagaatgcatccacaaaagat 24
              |||||||||||||| |||||||||
Sbjct: 146683 ggaaagaatgcatctacaaaagat 146706
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>gb|AC140436.3| Mus musculus BAC clone RP23-85O2 from chromosome 9, complete sequence
          Length = 142560

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    gcatcatgtttaaatatatt 482
              ||||||||||||||||||||
Sbjct: 118339 gcatcatgtttaaatatatt 118358
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>gb|AC122344.3| Mus musculus BAC clone RP23-364M19 from chromosome 9, complete sequence
          Length = 209165

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   aacagaagctgctttccaaa 130
             ||||||||||||||||||||
Sbjct: 43105 aacagaagctgctttccaaa 43086
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>gb|AC124352.2| Mus musculus BAC clone RP24-477C23 from chromosome 9, complete sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    gcatcatgtttaaatatatt 482
              ||||||||||||||||||||
Sbjct: 153958 gcatcatgtttaaatatatt 153977
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>emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on chromosome 10 Contains
             part of the CACNB2 gene for calcium channel
             voltage-dependent beta 2 subunit and a novel gene,
             complete sequence
          Length = 177656

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 188   tggcatacaaatattatgatgata 211
             ||||| ||||||||||||||||||
Sbjct: 11030 tggcacacaaatattatgatgata 11007
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>emb|AL035073.7|HS997O15 Human DNA sequence from clone RP5-997O15 on chromosome 20p11.21-12
             Contains genomic marker D20S904, STSs and GSSs, complete
             sequence
          Length = 97011

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   tgattgagatggcatacaaa 198
             ||||||||||||||||||||
Sbjct: 81180 tgattgagatggcatacaaa 81199
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>gb|AC112532.5| Rattus norvegicus 9 BAC CH230-20N15 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 138561

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    cggagaggatcataatctca 541
              ||||||||||||||||||||
Sbjct: 105677 cggagaggatcataatctca 105658
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>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11
          Length = 346161

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 323    gacaagtggttgagctttctgata 346
              ||||||||||||||||||| ||||
Sbjct: 230194 gacaagtggttgagctttcggata 230217
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>gb|AC162948.4| Mus musculus BAC clone RP23-14N2 from chromosome 9, complete sequence
          Length = 221791

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   gcatcatgtttaaatatatt 482
             ||||||||||||||||||||
Sbjct: 50294 gcatcatgtttaaatatatt 50275
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>emb|AL606996.3|OSJN00123 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0071D01,
             complete sequence
          Length = 78794

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   ctgctttccaaagactaaaa 138
             ||||||||||||||||||||
Sbjct: 76945 ctgctttccaaagactaaaa 76964
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>emb|CR352228.11| Zebrafish DNA sequence from clone CH211-104F13 in linkage group 23,
              complete sequence
          Length = 175139

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      ggaaagaatgcatccacaaaagat 24
              |||||||||||||| |||||||||
Sbjct: 155792 ggaaagaatgcatctacaaaagat 155815
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>gb|AC023503.23| Homo sapiens 3 BAC RP11-217I10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160370

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    ttaaatacaaatgatgcaca 53
             ||||||||||||||||||||
Sbjct: 29942 ttaaatacaaatgatgcaca 29961
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>emb|BX537275.8| Zebrafish DNA sequence from clone DKEYP-120E12 in linkage group 11,
             complete sequence
          Length = 173631

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   aaaataatgatggcaagtgc 522
             ||||||||||||||||||||
Sbjct: 61445 aaaataatgatggcaagtgc 61464
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>gb|AC102555.11| Mus musculus chromosome 8, clone RP23-163N19, complete sequence
          Length = 196060

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    agcatttaagcacatagttc 412
              ||||||||||||||||||||
Sbjct: 177359 agcatttaagcacatagttc 177340
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>gb|AF274856.3| Homo sapiens chromosome X clone RP11-1007I13 map q28, complete sequence
          Length = 173962

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   atgatactgccctgccaaaa 225
             ||||||||||||||||||||
Sbjct: 91729 atgatactgccctgccaaaa 91710
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>gb|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome
             V, complete sequence
          Length = 93672

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   agttgcatcatgtttaaata 478
             ||||||||||||||||||||
Sbjct: 75622 agttgcatcatgtttaaata 75641
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>gb|AC117440.5| Homo sapiens 3 BAC RP11-575C1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 199386

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   gcatcatgtttaaatatatt 482
             ||||||||||||||||||||
Sbjct: 17944 gcatcatgtttaaatatatt 17963
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 125     tccaaagactaaaagaatctgaga 148
               |||||||| |||||||||||||||
Sbjct: 1965331 tccaaagaataaaagaatctgaga 1965308
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>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15,
            complete sequence
          Length = 150007

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  ctgctttccaaagactaaaa 138
            ||||||||||||||||||||
Sbjct: 4819 ctgctttccaaagactaaaa 4838
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>emb|AL935040.6| Zebrafish DNA sequence from clone CH211-176L21, complete sequence
          Length = 159468

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   aaaataatgatggcaagtgc 522
             ||||||||||||||||||||
Sbjct: 62852 aaaataatgatggcaagtgc 62871
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>emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequence BAC R-1141N12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158099

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   tttccagaagaaaataatga 512
             ||||||||||||||||||||
Sbjct: 81674 tttccagaagaaaataatga 81655


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,396,008
Number of Sequences: 3902068
Number of extensions: 5396008
Number of successful extensions: 103565
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103279
Number of HSP's gapped (non-prelim): 279
length of query: 551
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 528
effective length of database: 17,143,297,704
effective search space: 9051661187712
effective search space used: 9051661187712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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