ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basda09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009601.1| Triticum aestivum clone wre1n.pk0079.c6:fis, full insert mRNA sequence Length = 1462 Score = 591 bits (298), Expect = e-166 Identities = 362/384 (94%), Gaps = 5/384 (1%) Strand = Plus / Plus Query: 18 aatggagacgccgtctccatggagggtcctcgagttctacagcggtatcggcggcatgcg 77 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 aatggagacgccgcccccatggagggtcctcgagttctacagcggtatcggcggcatgcg 127 Query: 78 gtactccctagcatcgacgggcgttcgcgcggaggtggtggaggcctttgacatcaacga 137 ||||||||| || ||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct: 128 gtactcccttgcgtcgtcgggcgttcgagcggaggtggtggaggcctttgacatcaacga 187 Query: 138 cgtngccaacgacgtatacgagcacaacttcgcccaccgcccctgccagggaaacattca 197 ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 188 cgtcgccaacgacgtctacgagcacaacttcggccaccgcccctgccagggaaacattca 247 Query: 198 aacactcactgctggtgatctagacaagtacaaggcacatgcatggntcctttctcctcc 257 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 248 aacactcactgctggtgatctagacaagtacaaggcacatgcatggctcctttctcctcc 307 Query: 258 atgtcaaccatacacacggcaaggacttcagaagcactcagctgatgcccgggccttttc 317 |||||||||||| |||| ||||||||||| || ||||||||||| ||||| ||||| Sbjct: 308 atgtcaaccatatacac-----ggacttcagaaacattcagctgatgctcgggcattttc 362 Query: 318 atttataaagattttaagccttatgcaaaacatgagctttcctccacaaatgttatttgt 377 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 atttataaagattttaaaccttatgcaaaacatgagctttcctccacaaatgttatttgt 422 Query: 378 ggagaatgttgtcggattcgaggt 401 ||| |||||||||||||||||||| Sbjct: 423 ggaaaatgttgtcggattcgaggt 446 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 404 ctgatacacatgaccagttgctaggggtcctttcaact 441 |||||||||||||||||||||||| ||||||||||||| Sbjct: 528 ctgatacacatgaccagttgctagcggtcctttcaact 565
>ref|NM_192752.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1080 Score = 404 bits (204), Expect = e-110 Identities = 354/405 (87%) Strand = Plus / Plus Query: 34 ccatggagggtcctcgagttctacagcggtatcggcggcatgcggtactccctagcatcg 93 ||||||| |||||||||||||| ||||| |||||||| ||| ||||||| || || || Sbjct: 16 ccatggaaagtcctcgagttctatagcggcatcggcgggatgaggtactcgctggcggcg 75 Query: 94 acgggcgttcgcgcggaggtggtggaggcctttgacatcaacgacgtngccaacgacgta 153 |||||| || || ||||||||||||||||| |||||||||||||| |||||||| || Sbjct: 76 tcgggcgcgcgggccgaggtggtggaggccttcgacatcaacgacgttgccaacgatgtc 135 Query: 154 tacgagcacaacttcgcccaccgcccctgccagggaaacattcaaacactcactgctggt 213 ||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||| || Sbjct: 136 tacgagctcaacttcggccaccgcccataccagggaaacattcaaacactcactgctagt 195 Query: 214 gatctagacaagtacaaggcacatgcatggntcctttctcctccatgtcaaccatacaca 273 || ||||| ||||| |||||||| |||||| | |||||||||||||| |||||||||||| Sbjct: 196 gacctagataagtataaggcacaagcatggcttctttctcctccatgccaaccatacaca 255 Query: 274 cggcaaggacttcagaagcactcagctgatgcccgggccttttcatttataaagatttta 333 ||||||||||| |||||||| ||||||||||| || || |||||||| ||||||||| | Sbjct: 256 cggcaaggactacagaagcattcagctgatgctcgagcattttcattcataaagattctt 315 Query: 334 agccttatgcaaaacatgagctttcctccacaaatgttatttgtggagaatgttgtcgga 393 | ||| ||| |||||||| |||||||||||||||||||||||||||| || || |||||| Sbjct: 316 aacctaatgaaaaacatgtgctttcctccacaaatgttatttgtggaaaacgtagtcgga 375 Query: 394 ttcgaggtgnctgatacacatgaccagttgctaggggtcctttca 438 || |||||| |||||||||||||||||||| ||| ||| |||||| Sbjct: 376 tttgaggtgtctgatacacatgaccagttgatagaggttctttca 420
>dbj|AK111502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P01, full insert sequence Length = 1739 Score = 404 bits (204), Expect = e-110 Identities = 354/405 (87%) Strand = Plus / Plus Query: 34 ccatggagggtcctcgagttctacagcggtatcggcggcatgcggtactccctagcatcg 93 ||||||| |||||||||||||| ||||| |||||||| ||| ||||||| || || || Sbjct: 98 ccatggaaagtcctcgagttctatagcggcatcggcgggatgaggtactcgctggcggcg 157 Query: 94 acgggcgttcgcgcggaggtggtggaggcctttgacatcaacgacgtngccaacgacgta 153 |||||| || || ||||||||||||||||| |||||||||||||| |||||||| || Sbjct: 158 tcgggcgcgcgggccgaggtggtggaggccttcgacatcaacgacgttgccaacgatgtc 217 Query: 154 tacgagcacaacttcgcccaccgcccctgccagggaaacattcaaacactcactgctggt 213 ||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||| || Sbjct: 218 tacgagctcaacttcggccaccgcccataccagggaaacattcaaacactcactgctagt 277 Query: 214 gatctagacaagtacaaggcacatgcatggntcctttctcctccatgtcaaccatacaca 273 || ||||| ||||| |||||||| |||||| | |||||||||||||| |||||||||||| Sbjct: 278 gacctagataagtataaggcacaagcatggcttctttctcctccatgccaaccatacaca 337 Query: 274 cggcaaggacttcagaagcactcagctgatgcccgggccttttcatttataaagatttta 333 ||||||||||| |||||||| ||||||||||| || || |||||||| ||||||||| | Sbjct: 338 cggcaaggactacagaagcattcagctgatgctcgagcattttcattcataaagattctt 397 Query: 334 agccttatgcaaaacatgagctttcctccacaaatgttatttgtggagaatgttgtcgga 393 | ||| ||| |||||||| |||||||||||||||||||||||||||| || || |||||| Sbjct: 398 aacctaatgaaaaacatgtgctttcctccacaaatgttatttgtggaaaacgtagtcgga 457 Query: 394 ttcgaggtgnctgatacacatgaccagttgctaggggtcctttca 438 || |||||| |||||||||||||||||||| ||| ||| |||||| Sbjct: 458 tttgaggtgtctgatacacatgaccagttgatagaggttctttca 502
>gb|AY029557.1| Zea mays DNA methyltransferase ZMET4 mRNA, complete cds Length = 1464 Score = 383 bits (193), Expect = e-103 Identities = 367/426 (86%) Strand = Plus / Plus Query: 14 aggcaatggagacgccgtctccatggagggtcctcgagttctacagcggtatcggcggca 73 |||| |||||| ||||| | || ||||| || ||||||||||||||||| ||||| ||| Sbjct: 24 aggcgatggaggcgccggcaccttggagagtgctcgagttctacagcggcatcggaggcc 83 Query: 74 tgcggtactccctagcatcgacgggcgttcgcgcggaggtggtggaggcctttgacatca 133 || ||||||| || || ||||||| || |||||||||||||| ||||| ||||||| Sbjct: 84 tgaggtactcgctgatggcgtcgggcgtgcgggcggaggtggtggaagccttcgacatca 143 Query: 134 acgacgtngccaacgacgtatacgagcacaacttcgcccaccgcccctgccagggaaaca 193 ||||||| ||||| ||||| || ||||||||||||| |||||||||||||||||| |||| Sbjct: 144 acgacgtcgccaatgacgtctatgagcacaacttcggccaccgcccctgccaggggaaca 203 Query: 194 ttcaaacactcactgctggtgatctagacaagtacaaggcacatgcatggntcctttctc 253 ||||||| ||||||||| |||| ||||||| |||||||||||||||||| | ||||||| Sbjct: 204 ttcaaacgctcactgctagtgacttagacaaatacaaggcacatgcatggcttctttctc 263 Query: 254 ctccatgtcaaccatacacacggcaaggacttcagaagcactcagctgatgcccgggcct 313 ||||||| || ||||||||||| ||||||||||||||||| ||||||||||| || || | Sbjct: 264 ctccatgccagccatacacacgacaaggacttcagaagcattcagctgatgctcgtgcat 323 Query: 314 tttcatttataaagattttaagccttatgcaaaacatgagctttcctccacaaatgttat 373 |||| || || |||||| | | ||| |||||| ||||||||| ||||||||||||||||| Sbjct: 324 tttcgttcatcaagattcttaacctcatgcaagacatgagctatcctccacaaatgttat 383 Query: 374 ttgtggagaatgttgtcggattcgaggtgnctgatacacatgaccagttgctaggggtcc 433 ||||||| || || || ||||| |||||| |||||||||||||||||||||| | ||||| Sbjct: 384 ttgtggaaaacgtagttggatttgaggtgtctgatacacatgaccagttgctggaggtcc 443 Query: 434 tttcaa 439 |||||| Sbjct: 444 tttcaa 449
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 133 bits (67), Expect = 5e-28 Identities = 90/98 (91%) Strand = Plus / Minus Query: 184 cagggaaacattcaaacactcactgctggtgatctagacaagtacaaggcacatgcatgg 243 ||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| |||||| Sbjct: 24244535 cagggaaacattcaaacactcactgctagtgacctagataagtataaggcacaagcatgg 24244476 Query: 244 ntcctttctcctccatgtcaaccatacacacggcaagg 281 | |||||||||||||| |||||||||||||||||||| Sbjct: 24244475 cttctttctcctccatgccaaccatacacacggcaagg 24244438 Score = 117 bits (59), Expect = 3e-23 Identities = 107/123 (86%) Strand = Plus / Minus Query: 279 aggacttcagaagcactcagctgatgcccgggccttttcatttataaagattttaagcct 338 |||||| |||||||| ||||||||||| || || |||||||| ||||||||| | | ||| Sbjct: 24244365 aggactacagaagcattcagctgatgctcgagcattttcattcataaagattcttaacct 24244306 Query: 339 tatgcaaaacatgagctttcctccacaaatgttatttgtggagaatgttgtcggattcga 398 ||| |||||||| |||||||||||||||||||||||||||| || || |||||||| || Sbjct: 24244305 aatgaaaaacatgtgctttcctccacaaatgttatttgtggaaaacgtagtcggatttga 24244246 Query: 399 ggt 401 ||| Sbjct: 24244245 ggt 24244243 Score = 95.6 bits (48), Expect = 1e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 109 gaggtggtggaggcctttgacatcaacgacgtngccaacgacgtatacgagcacaacttc 168 ||||||||||||||||| |||||||||||||| |||||||| || ||||||| ||||||| Sbjct: 24245200 gaggtggtggaggccttcgacatcaacgacgttgccaacgatgtctacgagctcaacttc 24245141 Query: 169 gcccaccgccc 179 | ||||||||| Sbjct: 24245140 ggccaccgccc 24245130 Score = 52.0 bits (26), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 398 aggtgnctgatacacatgaccagttgctaggggtcctttca 438 ||||| |||||||||||||||||||| ||| ||| |||||| Sbjct: 24244162 aggtgtctgatacacatgaccagttgatagaggttctttca 24244122 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 34 ccatggagggtcctcgagttctacagcggtatcggcgg 71 ||||||| |||||||||||||| ||||| |||||||| Sbjct: 24245377 ccatggaaagtcctcgagttctatagcggcatcggcgg 24245340
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 133 bits (67), Expect = 5e-28 Identities = 90/98 (91%) Strand = Plus / Minus Query: 184 cagggaaacattcaaacactcactgctggtgatctagacaagtacaaggcacatgcatgg 243 ||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| |||||| Sbjct: 69099 cagggaaacattcaaacactcactgctagtgacctagataagtataaggcacaagcatgg 69040 Query: 244 ntcctttctcctccatgtcaaccatacacacggcaagg 281 | |||||||||||||| |||||||||||||||||||| Sbjct: 69039 cttctttctcctccatgccaaccatacacacggcaagg 69002 Score = 117 bits (59), Expect = 3e-23 Identities = 107/123 (86%) Strand = Plus / Minus Query: 279 aggacttcagaagcactcagctgatgcccgggccttttcatttataaagattttaagcct 338 |||||| |||||||| ||||||||||| || || |||||||| ||||||||| | | ||| Sbjct: 68929 aggactacagaagcattcagctgatgctcgagcattttcattcataaagattcttaacct 68870 Query: 339 tatgcaaaacatgagctttcctccacaaatgttatttgtggagaatgttgtcggattcga 398 ||| |||||||| |||||||||||||||||||||||||||| || || |||||||| || Sbjct: 68869 aatgaaaaacatgtgctttcctccacaaatgttatttgtggaaaacgtagtcggatttga 68810 Query: 399 ggt 401 ||| Sbjct: 68809 ggt 68807 Score = 95.6 bits (48), Expect = 1e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 109 gaggtggtggaggcctttgacatcaacgacgtngccaacgacgtatacgagcacaacttc 168 ||||||||||||||||| |||||||||||||| |||||||| || ||||||| ||||||| Sbjct: 69764 gaggtggtggaggccttcgacatcaacgacgttgccaacgatgtctacgagctcaacttc 69705 Query: 169 gcccaccgccc 179 | ||||||||| Sbjct: 69704 ggccaccgccc 69694 Score = 52.0 bits (26), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 398 aggtgnctgatacacatgaccagttgctaggggtcctttca 438 ||||| |||||||||||||||||||| ||| ||| |||||| Sbjct: 68726 aggtgtctgatacacatgaccagttgatagaggttctttca 68686 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 34 ccatggagggtcctcgagttctacagcggtatcggcgg 71 ||||||| |||||||||||||| ||||| |||||||| Sbjct: 69941 ccatggaaagtcctcgagttctatagcggcatcggcgg 69904
>ref|NM_122459.2| Arabidopsis thaliana DNA binding AT5G25480 mRNA, complete cds Length = 1411 Score = 65.9 bits (33), Expect = 1e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 202 ctcactgctggtgatctagacaagtacaaggcacatgcatggntcctttctcctccatgt 261 |||||||||| |||| |||| ||||| || ||| |||| ||| | ||||||||||| ||| Sbjct: 271 ctcactgctgctgatttagataagtataatgcagatgcttggcttctttctcctccttgt 330 Query: 262 caaccatacacacggcaaggacttcagaagcactcagctgatgcccgggccttttc 317 ||||| || || | ||||| |||||||| ||||| | |||||| ||||| ||||| Sbjct: 331 caaccttatactagacaaggccttcagaaacactctggtgatgctcgggctttttc 386 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 358 cctccacaaatgttatttgtggagaatgttgtcggatt 395 |||||||||||||||||||| ||||||||||| ||||| Sbjct: 427 cctccacaaatgttatttgtagagaatgttgttggatt 464
>emb|BX831732.1|CNS0A11C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZF01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1355 Score = 65.9 bits (33), Expect = 1e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 202 ctcactgctggtgatctagacaagtacaaggcacatgcatggntcctttctcctccatgt 261 |||||||||| |||| |||| ||||| || ||| |||| ||| | ||||||||||| ||| Sbjct: 253 ctcactgctgctgatttagataagtataatgcagatgcttggcttctttctcctccttgt 312 Query: 262 caaccatacacacggcaaggacttcagaagcactcagctgatgcccgggccttttc 317 ||||| || || | ||||| |||||||| ||||| | |||||| ||||| ||||| Sbjct: 313 caaccttatactagacaaggccttcagaaacactctggtgatgctcgggctttttc 368 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 358 cctccacaaatgttatttgtggagaatgttgtcggatt 395 |||||||||||||||||||| ||||||||||| ||||| Sbjct: 409 cctccacaaatgttatttgtagagaatgttgttggatt 446
>gb|AY530747.1| Arabidopsis thaliana At5g25480 gene, partial cds Length = 935 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 358 cctccacaaatgttatttgtggagaatgttgtcggattcgaggt 401 |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct: 669 cctccacaaatgttatttgtagagaatgttgttggatttgaggt 712 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Plus Query: 202 ctcactgctggtgatctagacaagtacaaggcacatgcatggntcctttctcctccatgt 261 |||||||||| |||| |||| ||||| || ||| |||| ||| | ||||||||||| ||| Sbjct: 437 ctcactgctgctgatttagataagtataatgcagatgcttggcttctttctcctccttgt 496 Query: 262 caacc 266 ||||| Sbjct: 497 caacc 501
>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence Length = 110684 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 358 cctccacaaatgttatttgtggagaatgttgtcggattcgaggt 401 |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct: 29344 cctccacaaatgttatttgtagagaatgttgttggatttgaggt 29301 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Minus Query: 202 ctcactgctggtgatctagacaagtacaaggcacatgcatggntcctttctcctccatgt 261 |||||||||| |||| |||| ||||| || ||| |||| ||| | ||||||||||| ||| Sbjct: 29576 ctcactgctgctgatttagataagtataatgcagatgcttggcttctttctcctccttgt 29517 Query: 262 caacc 266 ||||| Sbjct: 29516 caacc 29512
>gb|AY085281.1| Arabidopsis thaliana clone 142593 mRNA, complete sequence Length = 1390 Score = 61.9 bits (31), Expect = 2e-06 Identities = 90/110 (81%) Strand = Plus / Plus Query: 202 ctcactgctggtgatctagacaagtacaaggcacatgcatggntcctttctcctccatgt 261 |||||||||| |||| |||| ||||| || ||| |||| ||| | ||||||||||| ||| Sbjct: 271 ctcactgctgctgatttagataagtataatgcagatgcttggcttctttctcctccttgt 330 Query: 262 caaccatacacacggcaaggacttcagaagcactcagctgatgcccgggc 311 ||||| || || | ||||| |||||||| ||||| | |||||| ||||| Sbjct: 331 caaccttatactagacaaggccttcagaaacactctggtgatgctcgggc 380 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 358 cctccacaaatgttatttgtggagaatgttgtcggatt 395 |||||||||||||||||||| ||||||||||| ||||| Sbjct: 427 cctccacaaatgttatttgtagagaatgttgttggatt 464
>emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in linkage group 5, complete sequence Length = 156095 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Plus Query: 215 atctagacaagtacaaggcacatgcat 241 ||||||||| ||||||||||||||||| Sbjct: 47223 atctagacaggtacaaggcacatgcat 47249
>emb|AL161422.14| Human DNA sequence from clone RP11-168G12 on chromosome 13 Contains the 3' end of the TNFRSF19 gene for tumour necrosis factor receptor superfamily member 19 and a CpG island, complete sequence Length = 143420 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 gccagggaaacattcaaacactcact 207 |||||||||||||||| ||||||||| Sbjct: 31575 gccagggaaacattcacacactcact 31550
>emb|AL732508.13| Mouse DNA sequence from clone RP23-270A11 on chromosome 4, complete sequence Length = 72254 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 314 tttcatttataaagattttaagcct 338 ||||||||||||| ||||||||||| Sbjct: 50791 tttcatttataaacattttaagcct 50815
>dbj|AK042999.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730046L11 product:unclassifiable, full insert sequence Length = 2502 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 314 tttcatttataaagattttaagcct 338 ||||||||||||| ||||||||||| Sbjct: 196 tttcatttataaacattttaagcct 172
>gb|AF289207.2|H010058S03 Mus musculus aspartyl beta-hydroxylase (ASPH) gene, exons 4 through 13, and alternative exon 14a; and aspartyl beta-hydroxylase Humbug splice variant, complete cds Length = 31248 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 314 tttcatttataaagattttaagcct 338 ||||||||||||| ||||||||||| Sbjct: 15803 tttcatttataaacattttaagcct 15779
>gb|BT013930.1| Lycopersicon esculentum clone 132928R, mRNA sequence Length = 1790 Score = 40.1 bits (20), Expect = 5.9 Identities = 123/158 (77%) Strand = Plus / Plus Query: 133 aacgacgtngccaacgacgtatacgagcacaacttcgcccaccgcccctgccagggaaac 192 |||||||| || || || || ||| |||||||||||| ||||| || | ||||| ||| Sbjct: 219 aacgacgttgctaatgatgtttaccagcacaacttcggtcaccggccttttcagggtaac 278 Query: 193 attcaaacactcactgctggtgatctagacaagtacaaggcacatgcatggntcctttct 252 ||||| || || | ||| | |||||| ||| ||||| || |||| ||| | |||||| Sbjct: 279 attcagactctgaatgccgctgatcttgacggctacaatgctgatgcttggttactttct 338 Query: 253 cctccatgtcaaccatacacacggcaaggacttcagaa 290 ||||| ||||| ||||| || || |||||||| ||||| Sbjct: 339 cctccttgtcagccatatactcgacaaggactccagaa 376
>gb|AC099606.13| Mus musculus chromosome 7, clone RP23-360N6, complete sequence Length = 193975 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttcatttataaagattttaa 334 |||||||||||||||||||| Sbjct: 113249 ttcatttataaagattttaa 113230
>gb|AC023950.6| Homo sapiens chromosome 11, clone RP11-808N1, complete sequence Length = 211464 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 tccatgtcaaccatacacac 274 |||||||||||||||||||| Sbjct: 38484 tccatgtcaaccatacacac 38503
>gb|AC087616.3| Homo sapiens chromosome 11, clone RP11-258C7, complete sequence Length = 177939 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 tccatgtcaaccatacacac 274 |||||||||||||||||||| Sbjct: 43464 tccatgtcaaccatacacac 43445
>ref|XM_222656.3| PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 12B (predicted) (Ppp1r12b_predicted), mRNA Length = 3897 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ttcctccacaaatgttattt 375 |||||||||||||||||||| Sbjct: 3663 ttcctccacaaatgttattt 3682
>emb|BX255881.9| Zebrafish DNA sequence from clone CH211-268E23 in linkage group 20, complete sequence Length = 163427 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gggaaacattcaaacactca 205 |||||||||||||||||||| Sbjct: 159029 gggaaacattcaaacactca 159048
>dbj|AB110697.1| Oryzias latipes OlGC5 gene for guanylyl cyclase, exon 1-19, complete cds Length = 18853 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tcatttataaagattttaag 335 |||||||||||||||||||| Sbjct: 1065 tcatttataaagattttaag 1046 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,605,357 Number of Sequences: 3902068 Number of extensions: 3605357 Number of successful extensions: 72222 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72146 Number of HSP's gapped (non-prelim): 75 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
