ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3o22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F02, full insert sequence Length = 3411 Score = 613 bits (309), Expect = e-172 Identities = 396/425 (93%) Strand = Plus / Plus Query: 106 caagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagcga 165 ||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 202 caagatgtcttccccgagcaagcgccgcgagatggacttgatgaagctgatgatgagcga 261 Query: 166 ctataaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgagggcc 225 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct: 262 ctacaaggtggagatggtgaacgatgggatgcaggagttcttcgtggaattccgggggcc 321 Query: 226 tactgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcata 285 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 322 tactgaaagtatttatcaaggtggtgtctggaaggttagagtagaattgcctgatgcata 381 Query: 286 tccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatga 345 |||||||||||||||||| ||||||||| |||| ||||||||||| || ||||||||||| Sbjct: 382 tccttacaaatctccgtcgattggtttcgttaacaagatttatcatcctaatgtggatga 441 Query: 346 aatgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatct 405 |||||||||||| || ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 442 aatgtctggttctgtgtgtttggatgtcattaaccagacgtggagcccaatgtttgatct 501 Query: 406 agtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcc 465 ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 502 agttaatgtgttcgaagtcttccttccacaacttctattgtacccaaatccttctgaccc 561 Query: 466 attaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagt 525 |||||| |||||||||||||| || |||||||| ||||| |||||||||||||||||||| Sbjct: 562 attaaatggagaggctgctgcactgatgatgcgtgatcgtcctgcttatgaacaaaaagt 621 Query: 526 gaaag 530 ||||| Sbjct: 622 gaaag 626
>dbj|AK120481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112B17, full insert sequence Length = 579 Score = 567 bits (286), Expect = e-158 Identities = 379/410 (92%) Strand = Plus / Plus Query: 106 caagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagcga 165 ||||||||| | ||| ||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 170 caagatgtctttcccgagcaagcgccgcgagatggacttgatgaagctgatgatgagcga 229 Query: 166 ctataaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgagggcc 225 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct: 230 ctacaaggtggagatggtgaacgatgggatgcaggagttcttcgtggaattccgggggcc 289 Query: 226 tactgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcata 285 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 290 tactgaaagtatttatcaaggtggtgtctggaaggttagagtaggattgcctgatgcata 349 Query: 286 tccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatga 345 |||||||||||||||||| ||||||||| |||| ||||||||||| || ||||||||||| Sbjct: 350 tccttacaaatctccgtcgattggtttcgttaacaagatttatcatcctaatgtggatga 409 Query: 346 aatgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatct 405 |||||||||||| || ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 410 aatgtctggttctgtgtgtttggatgtcattaaccagacgtggagcccaatgtttgatct 469 Query: 406 agtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcc 465 ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 470 agttaatgtgttcgaagtcttccttccacaacttctattgtacccaaatccttctgaccc 529 Query: 466 attaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatg 515 |||||| |||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 530 attaaatggagaggctgctgcactgatgatgcgtgatcgtcctgcttatg 579
>gb|BT016989.1| Zea mays clone EK07D2304F01.c mRNA sequence Length = 789 Score = 498 bits (251), Expect = e-137 Identities = 416/471 (88%) Strand = Plus / Plus Query: 106 caagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagcga 165 ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 53 caagatgtcgtccccgagcaagcgccgcgagatggaccttatgaagctgatgatgagcga 112 Query: 166 ctataaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgagggcc 225 ||| |||||||||||||||||||| |||||||| ||||||||||| |||||| || || Sbjct: 113 ctacaaggtggagatggtgaacgacgggatgcaggaattcttcgtcgaattcaagggccc 172 Query: 226 tactgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcata 285 | |||||||| || ||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 173 ggccgaaagtatctaccaaggtggtgtctggaaggttcgggtagaactgcctgatgcata 232 Query: 286 tccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatga 345 ||||||||||| ||||| || || ||||| || |||||||||||||||||||| ||||| Sbjct: 233 cccttacaaatccccgtccatcggcttcatcaacaagatttatcacccgaatgtcgatga 292 Query: 346 aatgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatct 405 |||||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| Sbjct: 293 gatgtctggctctgtctgtttggatgtcataaaccagacatggagcccaatgtttgatct 352 Query: 406 agtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcc 465 ||||||||| || ||||| ||||||||||| || || ||||||||||||| |||||||| Sbjct: 353 agtaaatgtttttgaagtattccttccacagctgttgctgtacccaaatccttctgatcc 412 Query: 466 attaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagt 525 |||||| || |||||||| || || |||||||| ||||| |||| ||||||||| ||||| Sbjct: 413 attaaatggggaggctgcagcactgatgatgcgtgatcggcctgtttatgaacagaaagt 472 Query: 526 gaaagaattttgtgataagtatgcgaaaccagaggatgctggcataacccc 576 |||||||| |||||| |||||||| ||||||||||| |||||||| ||||| Sbjct: 473 gaaagaatattgtgaaaagtatgctaaaccagaggacgctggcatcacccc 523
>gb|AY103864.1| Zea mays PCO154745 mRNA sequence Length = 906 Score = 482 bits (243), Expect = e-133 Identities = 408/463 (88%) Strand = Plus / Plus Query: 105 ccaagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagcg 164 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 189 ccaagatgtcgtccccgagcaagcgccgcgagatggaccttatgaagctgatgatgagcg 248 Query: 165 actataaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgagggc 224 |||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct: 249 actacaaggtggagatggtgaacgatgggatgcaggaattcttcgtcgaattcaaggggc 308 Query: 225 ctactgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcat 284 | | |||||||| || ||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 309 cggccgaaagtatctaccaaggtggtgtctggaaggttcgggtagaactgcctgatgcat 368 Query: 285 atccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatg 344 | ||||||||||| ||||| || || ||||| || |||||||||||||||||||| |||| Sbjct: 369 acccttacaaatccccgtccatcggcttcatcaacaagatttatcacccgaatgtcgatg 428 Query: 345 aaatgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatc 404 | |||||||| || || ||||| ||||| || |||||||||||||||||||||||||||| Sbjct: 429 agatgtctggctctgtctgtttggatgtcataaaccagacatggagcccaatgtttgatc 488 Query: 405 tagtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatc 464 |||||||||| || ||||| ||||||||||| || | | || |||||||| ||||||| Sbjct: 489 tagtaaatgtttttgaagtattccttccacagctgttactatatccaaatccttctgatc 548 Query: 465 cattaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaag 524 ||||||| || |||||||| || || |||||||| ||||| |||| ||||||||| |||| Sbjct: 549 cattaaatggggaggctgcagcactgatgatgcgtgatcgtcctgtttatgaacagaaag 608 Query: 525 tgaaagaattttgtgataagtatgcgaaaccagaggatgctgg 567 ||||||||| |||||| |||||||| ||||||||||| ||||| Sbjct: 609 tgaaagaatattgtgagaagtatgccaaaccagaggacgctgg 651
>ref|NM_196743.1| Oryza sativa (japonica cultivar-group) putative acetohydroxyacid isomeroreductase (OSJNBa0094K20.18), mRNA Length = 588 Score = 420 bits (212), Expect = e-114 Identities = 272/292 (93%) Strand = Plus / Plus Query: 110 atgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagcgactat 169 ||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 1 atgtcttccccgagcaagcgccgcgagatggacttgatgaagctgatgatgagcgactac 60 Query: 170 aaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgagggcctact 229 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 61 aaggtggagatggtgaacgatgggatgcaggagttcttcgtggaattccgggggcctact 120 Query: 230 gaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatcct 289 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 121 gaaagtatttatcaaggtggtgtctggaaggttagagtagaattgcctgatgcatatcct 180 Query: 290 tacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatg 349 |||||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||||| Sbjct: 181 tacaaatctccgtcgattggtttcgttaacaagatttatcatcctaatgtggatgaaatg 240 Query: 350 tctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttg 401 |||||||| || ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 241 tctggttctgtgtgtttggatgtcattaaccagacgtggagcccaatgtttg 292 Score = 214 bits (108), Expect = 2e-52 Identities = 159/176 (90%) Strand = Plus / Plus Query: 401 gatctagtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtct 460 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 328 gatctagttaatgtgttcgaagtcttccttccacaacttctattgtacccaaatccttct 387 Query: 461 gatccattaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaa 520 || |||||||| |||||||||||||| || |||||||| ||||| ||||||||||||||| Sbjct: 388 gacccattaaatggagaggctgctgcactgatgatgcgtgatcgtcctgcttatgaacaa 447 Query: 521 aaagtgaaagaattttgtgataagtatgcgaaaccagaggatgctggcataacccc 576 ||||||||||||| ||| || || ||||| || || |||||||||||| ||||||| Sbjct: 448 aaagtgaaagaatattgcgaaaaatatgcaaagcccgaggatgctggcgtaacccc 503
>gb|AY111755.1| Zea mays CL20312_1 mRNA sequence Length = 907 Score = 412 bits (208), Expect = e-112 Identities = 373/428 (87%) Strand = Plus / Plus Query: 104 cccaagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagc 163 ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||| Sbjct: 102 cccaagatgtcttctccaagcaagcgccgggagatggacctcatgaagcttgcaatgagc 161 Query: 164 gactataaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgaggg 223 ||||| |||||||| |||||||||||||||||||| || ||||| || ||||| || ||| Sbjct: 162 gactacaaggtggatatggtgaacgatgggatgcaggagttctttgttgaatttcgtggg 221 Query: 224 cctactgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgca 283 |||| ||||||| || | |||| ||||||||||||||||||||||| ||||| Sbjct: 222 cctaacgaaagtacggattattaacgtgtatggaaggttagagtagaactgccagatgcg 281 Query: 284 tatccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggat 343 |||||||||||||| || || ||||||||||| |||||||| |||||||| ||||| ||| Sbjct: 282 tatccttacaaatccccatcgattggtttcatcaataagatatatcacccaaatgtcgat 341 Query: 344 gaaatgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgat 403 |||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 342 gaaatgtctggttcagtctgtttggatgtcatcaaccagacatggagcccaatgtttgat 401 Query: 404 ctagtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgat 463 || || ||||||||||| ||||||||||||||||||||||| || || ||||| |||||| Sbjct: 402 cttgtcaatgtgttcgaggtcttccttccacaacttctgttatatcctaatccttctgat 461 Query: 464 ccattaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaa 523 |||||||| ||||| || |||||| | |||||||| |||||||||||||| |||||||| Sbjct: 462 ccattaaatggagatgcagctgcgttgatgatgcgtgatcgccctgcttacgaacaaaag 521 Query: 524 gtgaaaga 531 |||||||| Sbjct: 522 gtgaaaga 529
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 186 bits (94), Expect = 5e-44 Identities = 121/130 (93%) Strand = Plus / Plus Query: 401 gatctagtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtct 460 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 15667849 gatctagttaatgtgttcgaagtcttccttccacaacttctattgtacccaaatccttct 15667908 Query: 461 gatccattaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaa 520 || |||||||| |||||||||||||| || |||||||| ||||| ||||||||||||||| Sbjct: 15667909 gacccattaaatggagaggctgctgcactgatgatgcgtgatcgtcctgcttatgaacaa 15667968 Query: 521 aaagtgaaag 530 |||||||||| Sbjct: 15667969 aaagtgaaag 15667978 Score = 184 bits (93), Expect = 2e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 234 gtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttaca 293 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 15667490 gtatttatcaaggtggtgtctggaaggttagagtagaattgcctgatgcatatccttaca 15667549 Query: 294 aatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatgt 350 |||||||||| ||||||||| |||| ||||||||||| || |||||||||||||||| Sbjct: 15667550 aatctccgtcgattggtttcgttaacaagatttatcatcctaatgtggatgaaatgt 15667606 Score = 133 bits (67), Expect = 7e-28 Identities = 79/83 (95%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattcttcgtgga 213 ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 15667098 gatgatgagcgactacaaggtggagatggtgaacgatgggatgcaggagttcttcgtgga 15667157 Query: 214 attccgagggcctactgaaagta 236 |||||| |||||||||||||||| Sbjct: 15667158 attccgggggcctactgaaagta 15667180 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 106 caagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctg 154 ||||||||| ||||| ||||||||||||||||||||| | ||||||||| Sbjct: 15666869 caagatgtcttccccgagcaagcgccgcgagatggacttgatgaagctg 15666917 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 349 gtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttg 401 ||||||||| || ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 15667698 gtctggttctgtgtgtttggatgtcattaaccagacgtggagcccaatgtttg 15667750
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 186 bits (94), Expect = 5e-44 Identities = 121/130 (93%) Strand = Plus / Plus Query: 401 gatctagtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtct 460 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 155215 gatctagttaatgtgttcgaagtcttccttccacaacttctattgtacccaaatccttct 155274 Query: 461 gatccattaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaa 520 || |||||||| |||||||||||||| || |||||||| ||||| ||||||||||||||| Sbjct: 155275 gacccattaaatggagaggctgctgcactgatgatgcgtgatcgtcctgcttatgaacaa 155334 Query: 521 aaagtgaaag 530 |||||||||| Sbjct: 155335 aaagtgaaag 155344 Score = 184 bits (93), Expect = 2e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 234 gtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttaca 293 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 154856 gtatttatcaaggtggtgtctggaaggttagagtagaattgcctgatgcatatccttaca 154915 Query: 294 aatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatgt 350 |||||||||| ||||||||| |||| ||||||||||| || |||||||||||||||| Sbjct: 154916 aatctccgtcgattggtttcgttaacaagatttatcatcctaatgtggatgaaatgt 154972 Score = 133 bits (67), Expect = 7e-28 Identities = 79/83 (95%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattcttcgtgga 213 ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 154464 gatgatgagcgactacaaggtggagatggtgaacgatgggatgcaggagttcttcgtgga 154523 Query: 214 attccgagggcctactgaaagta 236 |||||| |||||||||||||||| Sbjct: 154524 attccgggggcctactgaaagta 154546 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 106 caagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctg 154 ||||||||| ||||| ||||||||||||||||||||| | ||||||||| Sbjct: 154235 caagatgtcttccccgagcaagcgccgcgagatggacttgatgaagctg 154283 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 349 gtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttg 401 ||||||||| || ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 155064 gtctggttctgtgtgtttggatgtcattaaccagacgtggagcccaatgtttg 155116
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 186 bits (94), Expect = 5e-44 Identities = 121/130 (93%) Strand = Plus / Plus Query: 401 gatctagtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtct 460 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 15676090 gatctagttaatgtgttcgaagtcttccttccacaacttctattgtacccaaatccttct 15676149 Query: 461 gatccattaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaa 520 || |||||||| |||||||||||||| || |||||||| ||||| ||||||||||||||| Sbjct: 15676150 gacccattaaatggagaggctgctgcactgatgatgcgtgatcgtcctgcttatgaacaa 15676209 Query: 521 aaagtgaaag 530 |||||||||| Sbjct: 15676210 aaagtgaaag 15676219 Score = 184 bits (93), Expect = 2e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 234 gtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttaca 293 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 15675731 gtatttatcaaggtggtgtctggaaggttagagtagaattgcctgatgcatatccttaca 15675790 Query: 294 aatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatgt 350 |||||||||| ||||||||| |||| ||||||||||| || |||||||||||||||| Sbjct: 15675791 aatctccgtcgattggtttcgttaacaagatttatcatcctaatgtggatgaaatgt 15675847 Score = 133 bits (67), Expect = 7e-28 Identities = 79/83 (95%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattcttcgtgga 213 ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 15675339 gatgatgagcgactacaaggtggagatggtgaacgatgggatgcaggagttcttcgtgga 15675398 Query: 214 attccgagggcctactgaaagta 236 |||||| |||||||||||||||| Sbjct: 15675399 attccgggggcctactgaaagta 15675421 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 106 caagatgtcctccccaagcaagcgccgcgagatggacctcatgaagctg 154 ||||||||| ||||| ||||||||||||||||||||| | ||||||||| Sbjct: 15675110 caagatgtcttccccgagcaagcgccgcgagatggacttgatgaagctg 15675158 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 349 gtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttg 401 ||||||||| || ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 15675939 gtctggttctgtgtgtttggatgtcattaaccagacgtggagcccaatgtttg 15675991
>ref|NM_105055.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme AT1G63800 mRNA, complete cds Length = 907 Score = 172 bits (87), Expect = 8e-40 Identities = 318/395 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 ||||| ||||||||||| ||||| |||||||||||| | || ||||| |||||||| ||| Sbjct: 114 atgaaactgatgatgagtgactacaaggtggagatgatcaatgatggcatgcaagagttc 173 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 || || |||||| | || || | || ||||| ||| | || ||||| |||||| | ||| Sbjct: 174 tttgtcgaattcagtggacccaaagacagtatatatgagggaggtgtgtggaagataaga 233 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || ||||| |||||||| |||||||| |||||||| || |||||||||||| || || Sbjct: 234 gttgaacttcctgatgcttatccttataaatctccatctgttggtttcattaccaaaata 293 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 || ||||| ||||| ||||||||||| ||||| || ||| |||||||||| |||||||| Sbjct: 294 taccaccctaatgtcgatgaaatgtcaggttctgtttgtctagatgttattaaccagacc 353 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 |||||||| ||||| || || || ||||||||||| || ||||| |||||||| || Sbjct: 354 tggagcccgatgttcgacctggtgaatgtgttcgagacatttcttccgcaacttcttctg 413 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || || |||||||| |||||||| || || || || ||||| | |||||||| ||||| Sbjct: 414 tatccgaatccgtcagatccattgaatggtgaagcagctgcattgatgatgcgtgatcgt 473 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtga 540 ||| | |||||||| | ||| ||||| | |||||| Sbjct: 474 cctacctatgaacagagagttaaagagtattgtga 508
>gb|AY114061.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme UBC5 (At1g63800) mRNA, complete cds Length = 589 Score = 172 bits (87), Expect = 8e-40 Identities = 318/395 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 ||||| ||||||||||| ||||| |||||||||||| | || ||||| |||||||| ||| Sbjct: 37 atgaaactgatgatgagtgactacaaggtggagatgatcaatgatggcatgcaagagttc 96 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 || || |||||| | || || | || ||||| ||| | || ||||| |||||| | ||| Sbjct: 97 tttgtcgaattcagtggacccaaagacagtatatatgagggaggtgtgtggaagataaga 156 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || ||||| |||||||| |||||||| |||||||| || |||||||||||| || || Sbjct: 157 gttgaacttcctgatgcttatccttataaatctccatctgttggtttcattaccaaaata 216 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 || ||||| ||||| ||||||||||| ||||| || ||| |||||||||| |||||||| Sbjct: 217 taccaccctaatgtcgatgaaatgtcaggttctgtttgtctagatgttattaaccagacc 276 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 |||||||| ||||| || || || ||||||||||| || ||||| |||||||| || Sbjct: 277 tggagcccgatgttcgacctggtgaatgtgttcgagacatttcttccgcaacttcttctg 336 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || || |||||||| |||||||| || || || || ||||| | |||||||| ||||| Sbjct: 337 tatccgaatccgtcagatccattgaatggtgaagcagctgcattgatgatgcgtgatcgt 396 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtga 540 ||| | |||||||| | ||| ||||| | |||||| Sbjct: 397 cctacctatgaacagagagttaaagagtattgtga 431
>gb|AY074347.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme UBC5 (At1g63800) mRNA, complete cds Length = 915 Score = 172 bits (87), Expect = 8e-40 Identities = 318/395 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 ||||| ||||||||||| ||||| |||||||||||| | || ||||| |||||||| ||| Sbjct: 116 atgaaactgatgatgagtgactacaaggtggagatgatcaatgatggcatgcaagagttc 175 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 || || |||||| | || || | || ||||| ||| | || ||||| |||||| | ||| Sbjct: 176 tttgtcgaattcagtggacccaaagacagtatatatgagggaggtgtgtggaagataaga 235 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || ||||| |||||||| |||||||| |||||||| || |||||||||||| || || Sbjct: 236 gttgaacttcctgatgcttatccttataaatctccatctgttggtttcattaccaaaata 295 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 || ||||| ||||| ||||||||||| ||||| || ||| |||||||||| |||||||| Sbjct: 296 taccaccctaatgtcgatgaaatgtcaggttctgtttgtctagatgttattaaccagacc 355 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 |||||||| ||||| || || || ||||||||||| || ||||| |||||||| || Sbjct: 356 tggagcccgatgttcgacctggtgaatgtgttcgagacatttcttccgcaacttcttctg 415 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || || |||||||| |||||||| || || || || ||||| | |||||||| ||||| Sbjct: 416 tatccgaatccgtcagatccattgaatggtgaagcagctgcattgatgatgcgtgatcgt 475 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtga 540 ||| | |||||||| | ||| ||||| | |||||| Sbjct: 476 cctacctatgaacagagagttaaagagtattgtga 510
>gb|DQ027020.1| Arabidopsis thaliana ubiquitinating enzyme (At1g63800) mRNA, complete cds Length = 558 Score = 172 bits (87), Expect = 8e-40 Identities = 318/395 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 ||||| ||||||||||| ||||| |||||||||||| | || ||||| |||||||| ||| Sbjct: 37 atgaaactgatgatgagtgactacaaggtggagatgatcaatgatggcatgcaagagttc 96 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 || || |||||| | || || | || ||||| ||| | || ||||| |||||| | ||| Sbjct: 97 tttgtcgaattcagtggacccaaagacagtatatatgagggaggtgtgtggaagataaga 156 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || ||||| |||||||| |||||||| |||||||| || |||||||||||| || || Sbjct: 157 gttgaacttcctgatgcttatccttataaatctccatctgttggtttcattaccaaaata 216 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 || ||||| ||||| ||||||||||| ||||| || ||| |||||||||| |||||||| Sbjct: 217 taccaccctaatgtcgatgaaatgtcaggttctgtttgtctagatgttattaaccagacc 276 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 |||||||| ||||| || || || ||||||||||| || ||||| |||||||| || Sbjct: 277 tggagcccgatgttcgacctggtgaatgtgttcgagacatttcttccgcaacttcttctg 336 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || || |||||||| |||||||| || || || || ||||| | |||||||| ||||| Sbjct: 337 tatccgaatccgtcagatccattgaatggtgaagcagctgcattgatgatgcgtgatcgt 396 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtga 540 ||| | |||||||| | ||| ||||| | |||||| Sbjct: 397 cctacctatgaacagagagttaaagagtattgtga 431
>gb|M28059.1|WHTUBE2 Wheat ubiquitin carrier protein (E2) mRNA, complete cds Length = 965 Score = 168 bits (85), Expect = 1e-38 Identities = 241/293 (82%) Strand = Plus / Plus Query: 110 atgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagcgactat 169 ||||| ||||||||||||||| | |||||||| |||||||||||||||||||| ||||| Sbjct: 52 atgtcttccccaagcaagcgcagggagatggatctcatgaagctgatgatgagtgactac 111 Query: 170 aaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgagggcctact 229 |||||||| ||| | ||||| |||||||| || |||||||| | |||| || || | Sbjct: 112 aaggtggacatgatcaacgacgggatgcacgagttcttcgtccacttccacggacccaaa 171 Query: 230 gaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatcct 289 || |||||||| || |||||||| |||||||| || || ||||| | || || || ||| Sbjct: 172 gacagtatttaccagggtggtgtgtggaaggtcagggttgaactcaccgaagcttaccct 231 Query: 290 tacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatg 349 |||||||| || || ||||| |||| || ||||| |||||||| ||||| ||||| ||| Sbjct: 232 tacaaatccccttccattggcttcaccaacaagatctatcaccccaatgtcgatgagatg 291 Query: 350 tctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttga 402 |||||||| || || || ||||| ||||| |||||||||||||| |||||||| Sbjct: 292 tctggttctgtctgcttggatgtgatcaatcagacatggagcccgatgtttga 344
>ref|NM_123499.3| Arabidopsis thaliana UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin conjugating enzyme AT5G41340 (UBC4) mRNA, complete cds Length = 911 Score = 167 bits (84), Expect = 5e-38 Identities = 324/404 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 |||||||||||||||||||| ||||| ||||| | | | |||||||| |||||||||||| Sbjct: 211 atgaagctgatgatgagcgattataaagtggaaacgatcaacgatggcatgcaagaattc 270 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 | || |||||| || || | || ||| | |||||||| ||||| |||||| | ||| Sbjct: 271 tatgttgaattcaatggtcccaaagacagtctctatcaaggaggtgtgtggaagataaga 330 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || || || || ||||| |||||||| |||||||| || |||||||||||| ||| ||| Sbjct: 331 gttgagcttccagatgcttatccttataaatctccatctgttggtttcattactaaaatt 390 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 ||||| || ||||| |||||| |||| ||||| || ||||||||||| || ||||| || Sbjct: 391 tatcatcctaatgttgatgaactgtcgggttctgtttgtttagatgtgattaaccaaact 450 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 ||||| || ||||| || || || |||||||| || || ||||| || ||||| || Sbjct: 451 tggagtcctatgttcgaccttgtgaatgtgtttgagacatttcttcctcagcttcttctg 510 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || ||||| || || |||||||| || ||||| ||||||||| | |||||||| ||||| Sbjct: 511 tatccaaacccatcagatccattgaatggagaagctgctgcgttaatgatgcgtgatcgt 570 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtgataagtatgc 549 ||||||||||| ||| ||| ||||||| ||||| |||||||| Sbjct: 571 cctgcttatgagcaacgagttaaagaatactgtgagaagtatgc 614
>gb|AY096587.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2-21 kD 1 (At5g41340) mRNA, complete cds Length = 595 Score = 167 bits (84), Expect = 5e-38 Identities = 324/404 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 |||||||||||||||||||| ||||| ||||| | | | |||||||| |||||||||||| Sbjct: 37 atgaagctgatgatgagcgattataaagtggaaacgatcaacgatggcatgcaagaattc 96 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 | || |||||| || || | || ||| | |||||||| ||||| |||||| | ||| Sbjct: 97 tatgttgaattcaatggtcccaaagacagtctctatcaaggaggtgtgtggaagataaga 156 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || || || || ||||| |||||||| |||||||| || |||||||||||| ||| ||| Sbjct: 157 gttgagcttccagatgcttatccttataaatctccatctgttggtttcattactaaaatt 216 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 ||||| || ||||| |||||| |||| ||||| || ||||||||||| || ||||| || Sbjct: 217 tatcatcctaatgttgatgaactgtcgggttctgtttgtttagatgtgattaaccaaact 276 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 ||||| || ||||| || || || |||||||| || || ||||| || ||||| || Sbjct: 277 tggagtcctatgttcgaccttgtgaatgtgtttgagacatttcttcctcagcttcttctg 336 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || ||||| || || |||||||| || ||||| ||||||||| | |||||||| ||||| Sbjct: 337 tatccaaacccatcagatccattgaatggagaagctgctgcgttaatgatgcgtgatcgt 396 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtgataagtatgc 549 ||||||||||| ||| ||| ||||||| ||||| |||||||| Sbjct: 397 cctgcttatgagcaacgagttaaagaatactgtgagaagtatgc 440
>gb|AY065360.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme UBC4 (At5g41340) mRNA, complete cds Length = 927 Score = 167 bits (84), Expect = 5e-38 Identities = 324/404 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 |||||||||||||||||||| ||||| ||||| | | | |||||||| |||||||||||| Sbjct: 211 atgaagctgatgatgagcgattataaagtggaaacgatcaacgatggcatgcaagaattc 270 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 | || |||||| || || | || ||| | |||||||| ||||| |||||| | ||| Sbjct: 271 tatgttgaattcaatggtcccaaagacagtctctatcaaggaggtgtgtggaagataaga 330 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || || || || ||||| |||||||| |||||||| || |||||||||||| ||| ||| Sbjct: 331 gttgagcttccagatgcttatccttataaatctccatctgttggtttcattactaaaatt 390 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 ||||| || ||||| |||||| |||| ||||| || ||||||||||| || ||||| || Sbjct: 391 tatcatcctaatgttgatgaactgtcgggttctgtttgtttagatgtgattaaccaaact 450 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 ||||| || ||||| || || || |||||||| || || ||||| || ||||| || Sbjct: 451 tggagtcctatgttcgaccttgtgaatgtgtttgagacatttcttcctcagcttcttctg 510 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || ||||| || || |||||||| || ||||| ||||||||| | |||||||| ||||| Sbjct: 511 tatccaaacccatcagatccattgaatggagaagctgctgcgttaatgatgcgtgatcgt 570 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtgataagtatgc 549 ||||||||||| ||| ||| ||||||| ||||| |||||||| Sbjct: 571 cctgcttatgagcaacgagttaaagaatactgtgagaagtatgc 614
>gb|DQ027019.1| Arabidopsis thaliana ubiquitinating enzyme (At5g41340) mRNA, complete cds Length = 564 Score = 167 bits (84), Expect = 5e-38 Identities = 324/404 (80%) Strand = Plus / Plus Query: 146 atgaagctgatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattc 205 |||||||||||||||||||| ||||| ||||| | | | |||||||| |||||||||||| Sbjct: 37 atgaagctgatgatgagcgattataaagtggaaacgatcaacgatggcatgcaagaattc 96 Query: 206 ttcgtggaattccgagggcctactgaaagtatttatcaaggtggtgtctggaaggttaga 265 | || |||||| || || | || ||| | |||||||| ||||| |||||| | ||| Sbjct: 97 tatgttgaattcaatggtcccaaagacagtctctatcaaggaggtgtgtggaagataaga 156 Query: 266 gtagaactgcctgatgcatatccttacaaatctccgtcaattggtttcattaataagatt 325 || || || || ||||| |||||||| |||||||| || |||||||||||| ||| ||| Sbjct: 157 gttgagcttccagatgcttatccttataaatctccatctgttggtttcattactaaaatt 216 Query: 326 tatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagaca 385 ||||| || ||||| |||||| |||| ||||| || ||||||||||| || ||||| || Sbjct: 217 tatcatcctaatgttgatgaactgtcgggttctgtttgtttagatgtgattaaccaaact 276 Query: 386 tggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttg 445 ||||| || ||||| || || || |||||||| || || ||||| || ||||| || Sbjct: 277 tggagtcctatgttcgaccttgtgaatgtgtttgagacatttcttcctcagcttcttctg 336 Query: 446 tacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatcgc 505 || ||||| || || |||||||| || ||||| ||||||||| | |||||||| ||||| Sbjct: 337 tatccaaacccatcagatccattgaatggagaagctgctgcgttaatgatgcgtgatcgt 396 Query: 506 cctgcttatgaacaaaaagtgaaagaattttgtgataagtatgc 549 ||||||||||| ||| ||| ||||||| ||||| |||||||| Sbjct: 397 cctgcttatgagcaacgagttaaagaatactgtgagaagtatgc 440
>ref|NM_130166.2| Arabidopsis thaliana UBC6 (UBIQUITIN-CONJUGATING ENZYME 6); ubiquitin conjugating enzyme AT2G46030 (UBC6) mRNA, complete cds Length = 1482 Score = 141 bits (71), Expect = 3e-30 Identities = 269/335 (80%) Strand = Plus / Plus Query: 227 actgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatat 286 ||||| ||| ||||||| || ||||| |||||| | | ||| ||||| || || || ||| Sbjct: 196 actgacagtctttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttat 255 Query: 287 ccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 || ||||||||||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 256 ccatacaaatctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 315 Query: 347 atgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatcta 406 |||||| | || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 316 tcttctggtgctgtttgcttagatgttataaaccagacttggagcccaatgtttgatctt 375 Query: 407 gtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcca 466 |||||||||||||| ||||||||| ||||| || | || ||||| || || |||||| Sbjct: 376 ataaatgtgttcgaatccttccttccgcaactgcttctatatccaaacccatcagatcca 435 Query: 467 ttaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagtg 526 || || ||||| || ||| | || |||||||||| || | || ||||| | |||||| Sbjct: 436 tttaatggagaagccgcttctctgttgatgcgagaccgtgcagcctatgagctcaaagtg 495 Query: 527 aaagaattttgtgataagtatgcgaaaccagagga 561 ||||||| |||||| || ||||| ||||||||||| Sbjct: 496 aaagaatattgtgagaaatatgcaaaaccagagga 530
>emb|BX819316.1|CNS0A9TY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB67ZG03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 661 Score = 141 bits (71), Expect = 3e-30 Identities = 269/335 (80%) Strand = Plus / Plus Query: 227 actgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatat 286 ||||| ||| ||||||| || ||||| |||||| | | ||| ||||| || || || ||| Sbjct: 16 actgacagtctttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttat 75 Query: 287 ccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 || ||||||||||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 76 ccatacaaatctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 135 Query: 347 atgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatcta 406 |||||| | || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 136 tcttctggtgctgtttgcttagatgttataaaccagacttggagcccaatgtttgatctt 195 Query: 407 gtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcca 466 |||||||||||||| ||||||||| ||||| || | || ||||| || || |||||| Sbjct: 196 ataaatgtgttcgaatccttccttccgcaactgcttctatatccaaacccatcagatcca 255 Query: 467 ttaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagtg 526 || || ||||| || ||| | || |||||||||| || | || ||||| | |||||| Sbjct: 256 tttaatggagaagccgcttctctgttgatgcgagaccgtgcagcctatgagctcaaagtg 315 Query: 527 aaagaattttgtgataagtatgcgaaaccagagga 561 ||||||| |||||| || ||||| ||||||||||| Sbjct: 316 aaagaatattgtgagaaatatgcaaaaccagagga 350
>gb|BT005208.1| Arabidopsis thaliana At2g46030 mRNA, complete cds Length = 552 Score = 141 bits (71), Expect = 3e-30 Identities = 269/335 (80%) Strand = Plus / Plus Query: 227 actgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatat 286 ||||| ||| ||||||| || ||||| |||||| | | ||| ||||| || || || ||| Sbjct: 118 actgacagtctttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttat 177 Query: 287 ccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 || ||||||||||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 178 ccatacaaatctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 237 Query: 347 atgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatcta 406 |||||| | || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 238 tcttctggtgctgtttgcttagatgttataaaccagacttggagcccaatgtttgatctt 297 Query: 407 gtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcca 466 |||||||||||||| ||||||||| ||||| || | || ||||| || || |||||| Sbjct: 298 ataaatgtgttcgaatccttccttccgcaactgcttctatatccaaacccatcagatcca 357 Query: 467 ttaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagtg 526 || || ||||| || ||| | || |||||||||| || | || ||||| | |||||| Sbjct: 358 tttaatggagaagccgcttctctgttgatgcgagaccgtgcagcctatgagctcaaagtg 417 Query: 527 aaagaattttgtgataagtatgcgaaaccagagga 561 ||||||| |||||| || ||||| ||||||||||| Sbjct: 418 aaagaatattgtgagaaatatgcaaaaccagagga 452
>gb|DQ027021.1| Arabidopsis thaliana ubiquitinating enzyme (At2g46030) mRNA, complete cds Length = 552 Score = 141 bits (71), Expect = 3e-30 Identities = 269/335 (80%) Strand = Plus / Plus Query: 227 actgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatat 286 ||||| ||| ||||||| || ||||| |||||| | | ||| ||||| || || || ||| Sbjct: 118 actgacagtctttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttat 177 Query: 287 ccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 || ||||||||||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 178 ccatacaaatctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 237 Query: 347 atgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatcta 406 |||||| | || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 238 tcttctggtgctgtttgcttagatgttataaaccagacttggagcccaatgtttgatctt 297 Query: 407 gtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcca 466 |||||||||||||| ||||||||| ||||| || | || ||||| || || |||||| Sbjct: 298 ataaatgtgttcgaatccttccttccgcaactgcttctatatccaaacccatcagatcca 357 Query: 467 ttaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagtg 526 || || ||||| || ||| | || |||||||||| || | || ||||| | |||||| Sbjct: 358 tttaatggagaagccgcttctctgttgatgcgagaccgtgcagcctatgagctcaaagtg 417 Query: 527 aaagaattttgtgataagtatgcgaaaccagagga 561 ||||||| |||||| || ||||| ||||||||||| Sbjct: 418 aaagaatattgtgagaaatatgcaaaaccagagga 452
>gb|AF180143.1|AF180143 Glycine max ubiquitin carrier protein 4 (UBC4) mRNA, complete cds Length = 757 Score = 139 bits (70), Expect = 1e-29 Identities = 352/446 (78%) Strand = Plus / Plus Query: 110 atgtcctccccaagcaagcgccgcgagatggacctcatgaagctgatgatgagcgactat 169 ||||| || ||||||||||| || ||||||||| | ||||| ||||||||||| ||||| Sbjct: 17 atgtcttctccaagcaagcggcgagagatggacttgatgaaactgatgatgagtgactac 76 Query: 170 aaggtggagatggtgaacgatgggatgcaagaattcttcgtggaattccgagggcctact 229 |||||||||||| | || ||||| |||||||| || | ||| | |||| || || | | Sbjct: 77 aaggtggagatgattaatgatggaatgcaagagttttatgtgcatttccatggacccaat 136 Query: 230 gaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatcct 289 || ||| |||||| || ||||| ||||| || || || || ||||| ||||| |||||| Sbjct: 137 gagagtccttatcatggaggtgtgtggaaagtgagggttgagctgccagatgcttatcct 196 Query: 290 tacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatg 349 || |||||||| || || || || || |||||||| |||||||| ||||| ||||| ||| Sbjct: 197 tataaatctccttccataggctttatcaataagatctatcacccaaatgttgatgagatg 256 Query: 350 tctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatctagta 409 || || || || ||| | ||||||||||| || || ||||| || ||||||||||| || Sbjct: 257 tcaggatcagtttgtcttgatgttatcaatcaaacctggagtcccatgtttgatcttgtc 316 Query: 410 aatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatccatta 469 |||||||| || || || || ||||||||||| |||| || ||||| || || || ||| Sbjct: 317 aatgtgtttgaggtgtttctaccacaacttcttctgtatcccaatccatcagacccctta 376 Query: 470 aacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagtgaaa 529 || || || ||||| || | |||||||| ||||| | |||||||||||| || ||| Sbjct: 377 aatggtgaagctgcagctttaatgatgcgggatcgagccacttatgaacaaagggttaaa 436 Query: 530 gaattttgtgataagtatgcgaaacc 555 || | ||||| |||||||| ||||| Sbjct: 437 gagtactgtgagaagtatgctaaacc 462
>emb|BX821930.1|CNS0A94H Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL85ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 745 Score = 133 bits (67), Expect = 7e-28 Identities = 268/335 (80%) Strand = Plus / Plus Query: 227 actgaaagtatttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatat 286 ||||| ||| ||||||| || ||||| |||||| | | ||| ||||| || || || ||| Sbjct: 169 actgacagtctttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttat 228 Query: 287 ccttacaaatctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 || ||||||||||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 229 ccatacaaatctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 288 Query: 347 atgtctggttcggtatgtttagatgttatcaaccagacatggagcccaatgtttgatcta 406 |||||| | || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 289 tcttctggtgctgtttgcttagatgttataaaccagacttggagcccaatgtttgatctt 348 Query: 407 gtaaatgtgttcgaagtcttccttccacaacttctgttgtacccaaatccgtctgatcca 466 |||||||||||||| ||||||||| ||||| || | || ||||| || | |||||| Sbjct: 349 ataaatgtgttcgaatccttccttccgcaactgcttctatatccaaacccatgagatcca 408 Query: 467 ttaaacggagaggctgctgcgcttatgatgcgagatcgccctgcttatgaacaaaaagtg 526 || || ||||| || ||| | || |||||||||| || | || ||||| | |||||| Sbjct: 409 tttaatggagaagccgcttctctgttgatgcgagaccgtgcagcctatgagctcaaagtg 468 Query: 527 aaagaattttgtgataagtatgcgaaaccagagga 561 ||||||| |||||| || ||||| ||||||||||| Sbjct: 469 aaagaatattgtgagaaatatgcaaaaccagagga 503
>emb|BX832125.1|CNS0A0VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH53ZC03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1722 Score = 131 bits (66), Expect = 3e-27 Identities = 225/278 (80%) Strand = Plus / Plus Query: 239 tatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatct 298 |||||||| ||||| |||||| | ||||| || || || ||||| |||||||| |||||| Sbjct: 684 tatcaaggaggtgtgtggaagataagagttgagcttccagatgcttatccttataaatct 743 Query: 299 ccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatgtctggttcg 358 || || |||||||||||| ||| |||||||| || ||||| |||||| |||| ||||| Sbjct: 744 ccatctgttggtttcattactaaaatttatcatcctaatgttgatgaactgtcgggttct 803 Query: 359 gtatgtttagatgttatcaaccagacatggagcccaatgtttgatctagtaaatgtgttc 418 || ||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 804 gtttgtttagatgtaattaaccaaacttggagtcctatgttcgaccttgtgaatgtgttt 863 Query: 419 gaagtcttccttccacaacttctgttgtacccaaatccgtctgatccattaaacggagag 478 || || ||||| || ||||| |||| ||||| || || |||||||| || ||||| Sbjct: 864 gagacatttcttcctcagcttcttctgtatccaaacccatcagatccattgaatggagaa 923 Query: 479 gctgctgcgcttatgatgcgagatcgccctgcttatga 516 ||||||||| | |||||||| ||||| ||||||||||| Sbjct: 924 gctgctgcgttaatgatgcgtgatcgtcctgcttatga 961 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattct 206 |||||||||||| ||||| ||||| | | | |||||||| ||||||||||||| Sbjct: 216 gatgatgagcgattataaagtggaaacgatcaacgatggcatgcaagaattct 268
>emb|BX832123.1|CNS0A0V3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH53ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1728 Score = 115 bits (58), Expect = 2e-22 Identities = 223/278 (80%) Strand = Plus / Plus Query: 239 tatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatct 298 |||||||| ||||| |||||| | ||||| || || || ||||| |||||||| ||| | Sbjct: 685 tatcaaggaggtgtgtggaagataagagttgagcttccagatgcttatccttatgaatgt 744 Query: 299 ccgtcaattggtttcattaataagatttatcacccgaatgtggatgaaatgtctggttcg 358 || || |||||||||||| ||| |||||||| || ||||| |||||| |||| ||||| Sbjct: 745 ccatctgttggtttcattactaaaatttatcatcctaatgttgatgaactgtcgggttct 804 Query: 359 gtatgtttagatgttatcaaccagacatggagcccaatgtttgatctagtaaatgtgttc 418 || ||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 805 gtttgtttagatgtgattaaccaaacttggagtcctatgttcgaccttgtgaatgtgttt 864 Query: 419 gaagtcttccttccacaacttctgttgtacccaaatccgtctgatccattaaacggagag 478 || || ||||| || ||||| |||| ||||| || || |||||||| || ||||| Sbjct: 865 gagacatttcttcctcagcttcttctgtatccaaacccatcagatccattgaatggagaa 924 Query: 479 gctgctgcgcttatgatgcgagatcgccctgcttatga 516 ||||||||| | |||||||| ||||| ||||||||||| Sbjct: 925 gctgctgcgttaatgatgcgtgatcgtcctgcttatga 962 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattct 206 |||||||||||| ||| | ||||| | | | |||||||| ||||||||||||| Sbjct: 217 gatgatgagcgattatgaagtggaaacgatcaacgatggcatgcaagaattct 269
>gb|BT012754.1| Lycopersicon esculentum clone 113694F, mRNA sequence Length = 955 Score = 77.8 bits (39), Expect = 4e-11 Identities = 117/143 (81%) Strand = Plus / Plus Query: 329 cacccgaatgtggatgaaatgtctggttcggtatgtttagatgttatcaaccagacatgg 388 ||||| ||||||||||| ||||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 375 caccctaatgtggatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatgg 434 Query: 389 agcccaatgtttgatctagtaaatgtgttcgaagtcttccttccacaacttctgttgtac 448 ||||| ||||||||||| |||| || ||||| || || || ||||| ||| || | || Sbjct: 435 agccctatgtttgatctcttaaacgttttcgaggtttttctgccacagcttttgctatat 494 Query: 449 ccaaatccgtctgatccattaaa 471 || ||||| || ||||||||||| Sbjct: 495 ccgaatccttcggatccattaaa 517
>dbj|AB006707.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYC6 Length = 82315 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 239 tatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatct 298 |||||||| ||||| |||||| | ||||| || || || ||||| |||||||| |||||| Sbjct: 20159 tatcaaggaggtgtgtggaagataagagttgagcttccagatgcttatccttataaatct 20100 Query: 299 ccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 || || |||||||||||| ||| |||||||| || ||||| |||||| Sbjct: 20099 ccatctgttggtttcattactaaaatttatcatcctaatgttgatgaa 20052 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 444 tgtacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatc 503 |||| ||||| || || |||||||| || ||||| ||||||||| | |||||||| |||| Sbjct: 19771 tgtatccaaacccatcagatccattgaatggagaagctgctgcgttaatgatgcgtgatc 19712 Query: 504 gccctgcttatga 516 | ||||||||||| Sbjct: 19711 gtcctgcttatga 19699 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattct 206 |||||||||||| ||||| ||||| | | | |||||||| ||||||||||||| Sbjct: 20627 gatgatgagcgattataaagtggaaacgatcaacgatggcatgcaagaattct 20575
>gb|L19354.1|ATHUBIQUD Arabidopsis thaliana ubiquitin conjugating enzyme (UBC4) gene, complete cds and flanking regions Length = 2278 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 239 tatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatct 298 |||||||| ||||| |||||| | ||||| || || || ||||| |||||||| |||||| Sbjct: 1095 tatcaaggaggtgtgtggaagataagagttgagcttccagatgcttatccttataaatct 1154 Query: 299 ccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 || || |||||||||||| ||| |||||||| || ||||| |||||| Sbjct: 1155 ccatctgttggtttcattactaaaatttatcatcctaatgttgatgaa 1202 Score = 50.1 bits (25), Expect = 0.008 Identities = 61/73 (83%) Strand = Plus / Plus Query: 444 tgtacccaaatccgtctgatccattaaacggagaggctgctgcgcttatgatgcgagatc 503 |||| ||||| || || |||||||| || ||||| ||||||||| | |||||||| |||| Sbjct: 1483 tgtatccaaacccatcagatccattgaatggagaagctgctgcgttaatgatgcgtgatc 1542 Query: 504 gccctgcttatga 516 ||||||||||| Sbjct: 1543 atcctgcttatga 1555 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattct 206 |||||||||||| ||||| ||||| | | | |||||||| ||||||||||||| Sbjct: 627 gatgatgagcgattataaagtggaaacgatcaacgatggcatgcaagaattct 679
>gb|AC010852.7|AC010852 Arabidopsis thaliana chromosome 1 BAC T12P18 genomic sequence, complete sequence Length = 79469 Score = 69.9 bits (35), Expect = 9e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 248 ggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatctccgtcaatt 307 ||||| |||||| | ||||| ||||| |||||||| |||||||| |||||||| || || Sbjct: 72143 ggtgtgtggaagataagagttgaacttcctgatgcttatccttataaatctccatctgtt 72202 Query: 308 ggtttcattaataagatttatcacccgaatgtggatgaaatgt 350 |||||||||| || || || ||||| ||||| |||||||||| Sbjct: 72203 ggtttcattaccaaaatataccaccctaatgtcgatgaaatgt 72245 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattcttcgtgga 213 ||||||||| ||||| |||||||||||| | || ||||| |||||||| ||||| || || Sbjct: 71875 gatgatgagtgactacaaggtggagatgatcaatgatggcatgcaagagttctttgtcga 71934 Query: 214 attc 217 |||| Sbjct: 71935 attc 71938
>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete sequence Length = 87575 Score = 69.9 bits (35), Expect = 9e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 248 ggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatctccgtcaatt 307 ||||| |||||| | ||||| ||||| |||||||| |||||||| |||||||| || || Sbjct: 211 ggtgtgtggaagataagagttgaacttcctgatgcttatccttataaatctccatctgtt 270 Query: 308 ggtttcattaataagatttatcacccgaatgtggatgaaatgt 350 |||||||||| || || || ||||| ||||| |||||||||| Sbjct: 271 ggtttcattaccaaaatataccaccctaatgtcgatgaaatgt 313
>gb|L19356.1|ATHUBIQUF Arabidopsis thaliana ubiquitin conjugating enzyme (UBC5) gene, complete cds Length = 1888 Score = 69.9 bits (35), Expect = 9e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 248 ggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatctccgtcaatt 307 ||||| |||||| | ||||| ||||| |||||||| |||||||| |||||||| || || Sbjct: 992 ggtgtgtggaagataagagttgaacttcctgatgcttatccttataaatctccatctgtt 1051 Query: 308 ggtttcattaataagatttatcacccgaatgtggatgaaatgt 350 |||||||||| || || || ||||| ||||| |||||||||| Sbjct: 1052 ggtttcattaccaaaatataccaccctaatgtcgatgaaatgt 1094 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 154 gatgatgagcgactataaggtggagatggtgaacgatgggatgcaagaattcttcgtgga 213 ||||||||| ||||| |||||||||||| | || ||||| |||||||| ||||| || || Sbjct: 724 gatgatgagtgactacaaggtggagatgatcaatgatggcatgcaagagttctttgtcga 783 Query: 214 attc 217 |||| Sbjct: 784 attc 787
>ref|XM_636144.1| Dictyostelium discoideum hypothetical protein (DDB0206370), partial mRNA Length = 558 Score = 67.9 bits (34), Expect = 3e-08 Identities = 172/218 (78%) Strand = Plus / Plus Query: 254 tggaaggttagagtagaactgcctgatgcatatccttacaaatctccgtcaattggtttc 313 |||||||||||||| ||| | ||| || ||||| || ||||| || |||||||||||| Sbjct: 145 tggaaggttagagttgaattacctccagcctatccatataaatcaccttcaattggtttc 204 Query: 314 attaataagatttatcacccgaatgtggatgaaatgtctggttcggtatgtttagatgtt 373 | ||||| |||||||| || ||||| ||| | |||||||| || |||||||||||| Sbjct: 205 acaaataaaatttatcatccaaatgtcgatttagcttctggttcagtttgtttagatgtt 264 Query: 374 atcaaccagacatggagcccaatgtttgatctagtaaatgtgttcgaagtcttccttcca 433 || || || || ||||| ||||||||||| || ||||| | || ||| |||| | ||| Sbjct: 265 attaatcaaacttggagtccaatgtttgaccttataaatatttttgaaatctttttacca 324 Query: 434 caacttctgttgtacccaaatccgtctgatccattaaa 471 ||| | || || ||||||||||| |||| |||||||| Sbjct: 325 caattacttttatacccaaatccaactgacccattaaa 362
>emb|X71381.1|ATUBC6 A.thaliana gene for ubiquitin carrier protein Length = 1548 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 365 ttagatgttatcaaccagacatggagcccaatgtttg 401 ||||||||||| |||||||| |||||||||||||||| Sbjct: 1008 ttagatgttataaaccagacttggagcccaatgtttg 1044 Score = 44.1 bits (22), Expect = 0.50 Identities = 88/110 (80%) Strand = Plus / Plus Query: 237 tttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaat 296 ||||||| || ||||| |||||| | | ||| ||||| || || || ||||| ||||||| Sbjct: 765 tttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttatccatacaaat 824 Query: 297 ctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 |||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 825 ctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 874
>gb|AC005397.3| Arabidopsis thaliana chromosome 2 clone T3F17 map CIC02E07, complete sequence Length = 110149 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 365 ttagatgttatcaaccagacatggagcccaatgtttg 401 ||||||||||| |||||||| |||||||||||||||| Sbjct: 90874 ttagatgttataaaccagacttggagcccaatgtttg 90910 Score = 44.1 bits (22), Expect = 0.50 Identities = 88/110 (80%) Strand = Plus / Plus Query: 237 tttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaat 296 ||||||| || ||||| |||||| | | ||| ||||| || || || ||||| ||||||| Sbjct: 90631 tttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttatccatacaaat 90690 Query: 297 ctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 |||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 90691 ctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 90740
>gb|L19355.1|ATHUBIQUE Arabidopsis thaliana ubiquitin conjugating enzyme (UBC6) gene, complete cds Length = 1987 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 365 ttagatgttatcaaccagacatggagcccaatgtttg 401 ||||||||||| |||||||| |||||||||||||||| Sbjct: 1447 ttagatgttataaaccagacttggagcccaatgtttg 1483 Score = 44.1 bits (22), Expect = 0.50 Identities = 88/110 (80%) Strand = Plus / Plus Query: 237 tttatcaaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaat 296 ||||||| || ||||| |||||| | | ||| ||||| || || || ||||| ||||||| Sbjct: 1204 tttatcaggggggtgtatggaagataaaagtggaacttcccgaagcttatccatacaaat 1263 Query: 297 ctccgtcaattggtttcattaataagatttatcacccgaatgtggatgaa 346 |||| || |||| || | || |||||||||||||| ||||| |||||| Sbjct: 1264 ctccatctgttggatttgtcaacaagatttatcaccctaatgtcgatgaa 1313
>ref|NM_201489.1| Danio rerio ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) (ube2h), mRNA Length = 2790 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 362 tgtttagatgttatcaaccagacatgga 389 ||||||||||| |||||||||||||||| Sbjct: 379 tgtttagatgtgatcaaccagacatgga 406
>gb|BC049139.1| Danio rerio ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast), mRNA (cDNA clone MGC:55756 IMAGE:3816572), complete cds Length = 2790 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 362 tgtttagatgttatcaaccagacatgga 389 ||||||||||| |||||||||||||||| Sbjct: 379 tgtttagatgtgatcaaccagacatgga 406
>emb|AL590150.2| Zebrafish DNA sequence from clone RP71-3C13 in linkage group 4 Contains the 3' end of the ube2h gene for ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast), a novel gene, the nrf1 gene for nuclear respiratory factor 1 and two CpG islands, complete sequence Length = 148777 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Minus Query: 362 tgtttagatgttatcaaccagacatgga 389 ||||||||||| |||||||||||||||| Sbjct: 129400 tgtttagatgtgatcaaccagacatgga 129373
>ref|XM_696043.1| PREDICTED: Danio rerio similar to Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) (LOC572334), mRNA Length = 2588 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 362 tgtttagatgttatcaaccagacatgga 389 ||||||||||| |||||||||||||||| Sbjct: 349 tgtttagatgtgatcaaccagacatgga 376
>ref|XM_697420.1| PREDICTED: Danio rerio hypothetical protein LOC554472 (LOC554472), mRNA Length = 2758 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 362 tgtttagatgttatcaaccagacatgga 389 ||||||||||| |||||||||||||||| Sbjct: 378 tgtttagatgtgatcaaccagacatgga 405
>ref|XM_754023.1| Ustilago maydis 521 hypothetical protein (UM02969.1) partial mRNA Length = 1119 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 284 tatccttacaaatctccgtcaattggtttcattaataagattt 326 |||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 733 tatccttacaaatcgccctcaatcggtttcatgaacaagattt 775
>gb|AC135238.4| Mus musculus BAC clone RP23-314I1 from chromosome 3, complete sequence Length = 247498 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 311 ttcattaataagatttatcacc 332 |||||||||||||||||||||| Sbjct: 241467 ttcattaataagatttatcacc 241446
>gb|AC122038.3| Mus musculus BAC clone RP24-427G24 from chromosome 3, complete sequence Length = 188751 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 311 ttcattaataagatttatcacc 332 |||||||||||||||||||||| Sbjct: 158598 ttcattaataagatttatcacc 158577
>gb|AC115919.14| Mus musculus chromosome 3, clone RP24-493L18, complete sequence Length = 195790 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 311 ttcattaataagatttatcacc 332 |||||||||||||||||||||| Sbjct: 15119 ttcattaataagatttatcacc 15098
>emb|BX572082.4| Mouse DNA sequence from clone RP23-114B24 on chromosome X, complete sequence Length = 88681 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 12 tctctccttttcttttctctgcctcc 37 |||||| ||||||||||||||||||| Sbjct: 79441 tctctctttttcttttctctgcctcc 79466
>emb|AJ872272.1| Thermotoga sp. KOL6 16S rRNA gene, 23S rRNA gene, 5S rRNA gene, ahcY gene (partial), topG gene, hppa gene, acp gene, ORF5, ORF6, priA gene, ORF8, ORF9, ORF10, ORF11, ORF12, mrsA gene, ORF14, rrp2 gene; fsr gene, ORF17, ORF18, ORF21, ORF22, ORF23, ORF24, gppA gene ORF26, ORF27, clpA gene, tRNA-Ala gene, tRNA-Arg gene, tRNA-His gene, tRNA-Arg gene, tRNA-Gly gene, IGS, ITS1 and ITS2, strain KOL6 Length = 37534 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 cttttcttttctctgcctcctc 39 |||||||||||||||||||||| Sbjct: 24064 cttttcttttctctgcctcctc 24043
>gb|AC125267.18| Mus musculus chromosome 10, clone RP24-483E18, complete sequence Length = 203922 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 15 ctccttttcttttctctgcctcctccctt 43 |||||||||| |||||| ||||||||||| Sbjct: 127653 ctccttttctcttctctccctcctccctt 127681
>gb|AC168273.3| Mus musculus BAC RP23-184H4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202998 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 15 ctccttttcttttctctgcctcctccctt 43 |||||||||| |||||| ||||||||||| Sbjct: 117777 ctccttttctcttctctccctcctccctt 117749
>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence Length = 217754 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 cttttcttttctctgcctcct 38 ||||||||||||||||||||| Sbjct: 118515 cttttcttttctctgcctcct 118495
>gb|AC124738.5| Mus musculus BAC clone RP23-344C15 from chromosome 14, complete sequence Length = 204590 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 28094 tctctccttttcttttctctg 28114
>gb|AE014309.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 6 of 11 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 ctccttttcttttctctgcctcctc 39 ||||||||||||||||| ||||||| Sbjct: 87295 ctccttttcttttctcttcctcctc 87271
>gb|AY299213.1| Schizolobium parahybum clone Sp4 microsatellite sequence Length = 661 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 365 ttagatgttatcaaccagacatggagcccaatgtttg 401 ||||||||||| |||||||| ||||| || ||||||| Sbjct: 214 ttagatgttattaaccagacctggagtcccatgtttg 178
>emb|AL603713.6| Human DNA sequence from clone RP11-17C16 on chromosome 13, complete sequence Length = 83989 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 ctccttttcttttctctgcctcctc 39 ||||||||||||||||| ||||||| Sbjct: 65937 ctccttttcttttctcttcctcctc 65913
>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the 3' end of a novel gene, a novel gene and the KIRREL gene for kin of IRRE like (Drosophila), complete sequence Length = 189477 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 ctagtctctccttttcttttctctg 32 ||||||||||| ||||||||||||| Sbjct: 61866 ctagtctctccctttcttttctctg 61842
>emb|Y17013.1|PERY17013 Porcine endogenous retrovirus gag, pol, env genes Length = 7808 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 1561 tctctccttttcttttctctg 1541
>emb|AJ293657.1|PEN293657 Porcine endogenous type C retrovirus proviral gag gene, pol gene and env gene, class B, clone 213 Length = 8763 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2378 tctctccttttcttttctctg 2358
>emb|AJ279057.1|PEN279057 Porcine endogenous retrovirus proviral gag gene, pol gene and env gene Length = 8840 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2416 tctctccttttcttttctctg 2396
>emb|AJ133818.1|PEN133818 Porcine endogenous retrovirus type C proviral gag, pol and env genes and LTR (class B, clone 43) Length = 8750 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2365 tctctccttttcttttctctg 2345
>emb|AJ133817.1|PEN133817 Porcine endogenous retrovirus type C proviral gag, pol and env genesand LTR (class A, clone 42) Length = 8849 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2416 tctctccttttcttttctctg 2396
>emb|AJ133816.1|PEN133816 Porcine endogenous retrovirus type C proviral gag, pol and env genes and LTR (class B, clone 33) Length = 8918 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2455 tctctccttttcttttctctg 2435
>gb|AY099324.1| Porcine endogenous retrovirus B gag-pol polyprotein and env protein genes, complete cds Length = 8704 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2311 tctctccttttcttttctctg 2291
>gb|AY099323.1| Porcine endogenous retrovirus A gag-pol polyprotein and env protein genes, complete cds Length = 8714 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2314 tctctccttttcttttctctg 2294
>gb|AY056035.1| Porcine endogenous retrovirus clone 78 gag, pol and env genes, complete cds Length = 8763 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2378 tctctccttttcttttctctg 2358
>gb|AC091967.3| Homo sapiens chromosome 5 clone RP11-489I4, complete sequence Length = 187245 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tcttccttccacaacttctgt 443 ||||||||||||||||||||| Sbjct: 94766 tcttccttccacaacttctgt 94746
>ref|XM_940469.1| PREDICTED: Homo sapiens KIAA0947 protein (KIAA0947), mRNA Length = 8880 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 tcttccttccacaacttctgt 443 ||||||||||||||||||||| Sbjct: 408 tcttccttccacaacttctgt 428
>ref|XM_029101.10| PREDICTED: Homo sapiens KIAA0947 protein (KIAA0947), mRNA Length = 8571 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 tcttccttccacaacttctgt 443 ||||||||||||||||||||| Sbjct: 408 tcttccttccacaacttctgt 428
>gb|AY265811.1| Porcine endogenous retrovirus gag protein (gag) mRNA, complete cds Length = 1575 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 1302 tctctccttttcttttctctg 1282
>gb|AC010253.5| Homo sapiens chromosome 5 clone CTC-432B14, complete sequence Length = 76440 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 tcttccttccacaacttctgt 443 ||||||||||||||||||||| Sbjct: 34437 tcttccttccacaacttctgt 34457
>gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, complete sequence Length = 192708 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 tcttccttccacaacttctgt 443 ||||||||||||||||||||| Sbjct: 183515 tcttccttccacaacttctgt 183535
>gb|AF147808.1|AF147808 Sus scrofa domestica porcine endogenous retrovirus type C gag-pol precursor, gene, partial cds Length = 3025 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 2333 tctctccttttcttttctctg 2313
>dbj|AK112527.1| Ciona intestinalis cDNA, clone:cicl028m09, full insert sequence Length = 1448 Score = 42.1 bits (21), Expect = 2.0 Identities = 60/73 (82%) Strand = Plus / Plus Query: 243 aaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatctccgt 302 |||| ||||| |||||||||||||| || |||||||| ||| || | ||||| || | Sbjct: 340 aagggggtgtgtggaaggttagagttgacctgcctgaaaaatacccgtttaaatcaccat 399 Query: 303 caattggtttcat 315 ||||||||||||| Sbjct: 400 caattggtttcat 412
>dbj|AK112526.1| Ciona intestinalis cDNA, clone:cicl028i18, full insert sequence Length = 1976 Score = 42.1 bits (21), Expect = 2.0 Identities = 60/73 (82%) Strand = Plus / Plus Query: 243 aaggtggtgtctggaaggttagagtagaactgcctgatgcatatccttacaaatctccgt 302 |||| ||||| |||||||||||||| || |||||||| ||| || | ||||| || | Sbjct: 339 aagggggtgtgtggaaggttagagttgacctgcctgaaaaatacccgtttaaatcaccat 398 Query: 303 caattggtttcat 315 ||||||||||||| Sbjct: 399 caattggtttcat 411
>gb|AF038601.1|AF038601 Sus scrofa porcine endogenous retrovirus ERV-PK15 mRNA, complete sequence Length = 7333 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctctg 32 ||||||||||||||||||||| Sbjct: 1899 tctctccttttcttttctctg 1879
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 tccacaacttctgttgtacc 449 |||||||||||||||||||| Sbjct: 121351 tccacaacttctgttgtacc 121332
>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11, complete sequence Length = 145796 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 112209 tctctccttttcttttctct 112228
>gb|AC186559.1| Gasterosteus aculeatus clone VMRC26-231K03, complete sequence Length = 150088 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 aagtcttccttccacaactt 439 |||||||||||||||||||| Sbjct: 123266 aagtcttccttccacaactt 123247
>gb|AC159980.10| Mus musculus chromosome 3, clone RP24-171D20, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 132497 tctctccttttcttttctct 132516
>gb|AC122204.3| Mus musculus BAC clone RP23-73N8 from chromosome 1, complete sequence Length = 197949 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ccttccacaacttctgttgt 446 |||||||||||||||||||| Sbjct: 84731 ccttccacaacttctgttgt 84712
>ref|XM_653148.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0636.2), mRNA Length = 1467 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gatgggatgcaagaattctt 207 |||||||||||||||||||| Sbjct: 739 gatgggatgcaagaattctt 720
>gb|AC167018.4| Mus musculus BAC clone RP23-354F11 from chromosome 16, complete sequence Length = 199488 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ccttttcttttctctgcctc 36 |||||||||||||||||||| Sbjct: 189718 ccttttcttttctctgcctc 189699
>gb|AY437840.1| Porcine endogenous retrovirus isolate Tr1 gag protein (gag) gene, partial cds Length = 1575 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctctccttttcttttctctg 32 |||||||||||||||||||| Sbjct: 1301 ctctccttttcttttctctg 1282
>gb|AC166903.2| Mus musculus BAC clone RP24-163K10 from chromosome 16, complete sequence Length = 184060 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ccttttcttttctctgcctc 36 |||||||||||||||||||| Sbjct: 47897 ccttttcttttctctgcctc 47878
>gb|AC104096.5| Mus musculus BAC clone RP24-370O22 from chromosome 8, complete sequence Length = 160450 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 98813 tctctccttttcttttctct 98832
>gb|AC127347.4| Mus musculus BAC clone RP23-54N12 from chromosome 18, complete sequence Length = 220483 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 tttatcaaggtggtgtctggaagg 260 ||||||| |||||||||||||||| Sbjct: 89900 tttatcatggtggtgtctggaagg 89923
>ref|XM_719516.1| Plasmodium yoelii yoelii str. 17XNL ubiquitin-conjugating enzyme (PY00468) partial mRNA Length = 522 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 350 tctggttcggtatgtttagatgttatcaacca 381 ||||| || ||||||||||||||||| ||||| Sbjct: 193 tctggatctgtatgtttagatgttattaacca 224
>ref|XM_735045.1| Plasmodium chabaudi chabaudi ubiquitin-conjugating enzyme, (PC000005.01.0) partial mRNA Length = 324 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 362 tgtttagatgttatcaaccagacatgga 389 |||||||||||||| ||||| ||||||| Sbjct: 259 tgtttagatgttattaaccaaacatgga 286
>emb|AL390240.18| Human DNA sequence from clone RP11-428F18 on chromosome 9 Contains the TNFSF15 gene for tumor necrosis factor (ligand) superfamily, member 15 (TL1, VEG1), complete sequence Length = 93876 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 48760 tctctccttttcttttctct 48779
>emb|AL356255.15| Human DNA sequence from clone RP11-400D22 on chromosome 10 Contains part of the gene for VPS10 domain receptor protein SORCS 1 and a CpG island, complete sequence Length = 116139 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tcttttctctgcctcctccc 41 |||||||||||||||||||| Sbjct: 14652 tcttttctctgcctcctccc 14671
>emb|AL138765.18| Human DNA sequence from clone RP11-34E5 on chromosome 10 Contains the SMBP gene for SM-11044 binding protein (SMBP)(EP70-P-iso), the TLL2 gene for tolloid-like 2, a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1)(B23, NPM, NUMATRIN) pseudogene, a ribosomal protein S2 (RPS2)(LLREP3) pseudogene, the 3' end of the gene for a novel protein (possible ortholog of mouse phosphoinositide-3-kinase adaptor protein 1 (Pik3ap1)) and two CpG islands, complete sequence Length = 162820 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gtctctccttttcttttctc 30 |||||||||||||||||||| Sbjct: 72283 gtctctccttttcttttctc 72264
>emb|AL121713.24|HSBK211L9 Human DNA sequence from clone CTA-211L9 on chromosome 6 Contains the gene for KIAA0164 protein, the 5' end of a novel gene and two CpG Islands, complete sequence Length = 67575 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 caattggtttcattaataagattt 326 ||||||||||||||||||| |||| Sbjct: 27392 caattggtttcattaataatattt 27369
>emb|AL035608.11|HS479J7 Human DNA sequence from clone RP3-479J7 on chromosome Xq21.33-23 Contains the gene for tenomodulin protein (TNMD), the TM4SF6 gene for transmembrane 4 superfamily member 6, the 5' end of the gene for sushi-repeat protein (SRPUL) and two CpG islands, complete sequence Length = 97189 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 513 atgaacaaaaagtgaaagaatttt 536 ||||||||||| |||||||||||| Sbjct: 61467 atgaacaaaaactgaaagaatttt 61490
>gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, complete sequence Length = 187070 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 aattggtttcattaataagattta 327 |||||||||||| ||||||||||| Sbjct: 182837 aattggtttcatgaataagattta 182860
>gb|AC162519.4| Mus musculus chromosome 8, clone RP24-146M21, complete sequence Length = 150115 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 aattggtttcattaataagattta 327 |||||||||||| ||||||||||| Sbjct: 140913 aattggtttcatgaataagattta 140890
>emb|AL645966.30| Mouse DNA sequence from clone DN-144H19 on chromosome 3 Contains the 3' end of the Il21 gene for interleukin 21, a novel pseudogene (D530049N12RIK), a novel gene (C030047M16RIK), the Il2 gene for interleukin 2, the Tenr gene for testis nuclear RNA binding protein, a NADH dehydrogenase subunit 5 (ND5) pseudogene and a putative S1 RNA binding domain protein (PS1D) (2810055E05RIK) pseudogene, complete sequence Length = 161393 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 85617 tctctccttttcttttctct 85598
>emb|CR533571.9| Zebrafish DNA sequence from clone CH211-209O12 in linkage group 16, complete sequence Length = 218847 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 ctctccttttcttttctctgcctcctcc 40 ||||||||||||| |||||| ||||||| Sbjct: 174884 ctctccttttcttctctctgtctcctcc 174857
>gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, complete sequence Length = 247058 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 192292 tctctccttttcttttctct 192311 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 192277 tctctccttttcttttctct 192296
>gb|AC006206.3| Homo sapiens 12 BAC RPCI11-319E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180388 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 ttctctgcctcctcccttat 45 |||||||||||||||||||| Sbjct: 4323 ttctctgcctcctcccttat 4304
>gb|AC093013.14| Homo sapiens 12 BAC RP11-158O15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161114 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tctccttttcttttctctgc 33 |||||||||||||||||||| Sbjct: 7546 tctccttttcttttctctgc 7527
>gb|AC104837.2| Homo sapiens chromosome 1 clone RP4-641G12, complete sequence Length = 151265 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 agtctctccttttcttttctctgc 33 |||| ||||||||||||||||||| Sbjct: 87701 agtccctccttttcttttctctgc 87678
>dbj|AK171803.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830011N15 product:hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit, full insert sequence Length = 4377 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 3366 tctctccttttcttttctct 3385 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 3351 tctctccttttcttttctct 3370
>gb|AC154503.3| Mus musculus BAC clone RP24-89J21 from chromosome 13, complete sequence Length = 176432 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 150955 tctctccttttcttttctct 150974
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tttcatcttttttgccccca 107 |||||||||||||||||||| Sbjct: 122516 tttcatcttttttgccccca 122535
>gb|AC127466.3| Atelerix albiventris clone LB4-197A24, complete sequence Length = 163018 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tttcatcttttttgccccca 107 |||||||||||||||||||| Sbjct: 57410 tttcatcttttttgccccca 57429
>gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome 13, complete sequence Length = 204262 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 78937 tctctccttttcttttctct 78956
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcaagcgccgcgagatggac 142 |||||||||||||||||||| Sbjct: 474806 gcaagcgccgcgagatggac 474825
>emb|BX255895.6| Zebrafish DNA sequence from clone CH211-241M14 in linkage group 6, complete sequence Length = 159627 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aaaaagtgaaagaattttgt 538 |||||||||||||||||||| Sbjct: 115101 aaaaagtgaaagaattttgt 115120
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 1660049 tctctccttttcttttctct 1660068
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 12823943 tctctccttttcttttctct 12823962
>gb|AC104689.4| Homo sapiens BAC clone RP11-158O16 from 4, complete sequence Length = 161428 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tctccttttcttttctctgc 33 |||||||||||||||||||| Sbjct: 153882 tctccttttcttttctctgc 153901
>gb|AC158528.1| Mus musculus BAC clone RP23-259G7 from chromosome 8, complete sequence Length = 180194 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 103150 tctctccttttcttttctct 103131
>gb|AC093639.5| Homo sapiens BAC clone RP11-315C24 from 2, complete sequence Length = 153053 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttttcttttctctgcctcct 38 |||||||||||||||||||| Sbjct: 49168 ttttcttttctctgcctcct 49149
>gb|AC055736.20|AC055736 Homo sapiens 12 BAC RP11-1020M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150902 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttttcttttctctgcctcct 38 |||||||||||||||||||| Sbjct: 80474 ttttcttttctctgcctcct 80455
>gb|AC092181.9| Homo sapiens 3 BAC RP11-735O9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183168 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 518 caaaaagtgaaagaattttgtgat 541 ||||||||||||| |||||||||| Sbjct: 65232 caaaaagtgaaagtattttgtgat 65209
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 104342 tctctccttttcttttctct 104361
>emb|BX247875.6| Zebrafish DNA sequence from clone CH211-201N18, complete sequence Length = 213093 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 ctctccttttcttttctctgcctcctcc 40 ||||||||||||| |||||| ||||||| Sbjct: 86172 ctctccttttcttctctctgtctcctcc 86145
>dbj|AK102359.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091I05, full insert sequence Length = 768 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 5 tctctccttttcttttctct 24
>emb|AL840625.9| Mouse DNA sequence from clone RP23-343F17 on chromosome 4, complete sequence Length = 164277 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 6691 tctctccttttcttttctct 6672
>gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complete sequence Length = 216389 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 111171 tctctccttttcttttctct 111152
>emb|CT033799.5| Mouse DNA sequence from clone RP23-158L14 on chromosome 12, complete sequence Length = 106335 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 74392 tctctccttttcttttctct 74373
>emb|CT033794.5| Mouse DNA sequence from clone RP24-161N10 on chromosome 12, complete sequence Length = 63092 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 31149 tctctccttttcttttctct 31130
>emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chromosome X, complete sequence Length = 163949 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 87339 tctctccttttcttttctct 87358
>emb|AL929377.6| Mouse DNA sequence from clone RP24-481A14 on chromosome 3, complete sequence Length = 31201 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 9153 tctctccttttcttttctct 9172
>emb|AL662823.12| Mouse DNA sequence from clone RP23-243E17 on chromosome 3, complete sequence Length = 215241 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 116264 tctctccttttcttttctct 116245
>emb|AL672089.17| Mouse DNA sequence from clone RP23-295D9 on chromosome X, complete sequence Length = 215390 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tccttttcttttctctgcct 35 |||||||||||||||||||| Sbjct: 94790 tccttttcttttctctgcct 94809
>emb|AL645807.4| Mouse DNA sequence from clone CT7-337H6 on chromosome 3, complete sequence Length = 201500 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 44714 tctctccttttcttttctct 44695
>gb|AC101903.7| Mus musculus chromosome 1, clone RP24-227M18, complete sequence Length = 172143 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ttttcttttctctgcctcct 38 |||||||||||||||||||| Sbjct: 96294 ttttcttttctctgcctcct 96313
>emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chromosome 4, complete sequence Length = 161389 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tctctccttttcttttctct 31 |||||||||||||||||||| Sbjct: 21671 tctctccttttcttttctct 21690
>emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on chromosome 11, complete sequence Length = 142565 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 tttcttttctctgcctcctccctt 43 |||||||||||| ||||||||||| Sbjct: 68233 tttcttttctctccctcctccctt 68210 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,365,000 Number of Sequences: 3902068 Number of extensions: 6365000 Number of successful extensions: 155670 Number of sequences better than 10.0: 129 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 155072 Number of HSP's gapped (non-prelim): 569 length of query: 580 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 557 effective length of database: 17,143,297,704 effective search space: 9548816821128 effective search space used: 9548816821128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
