ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basda18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 117742 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 117684 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117683 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 117624 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117623 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 117564 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 117563 gaggcgtgc 117555 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 97414 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 97472 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97473 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 97532 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97533 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 97592 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 97593 gaggcgtgc 97601
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 117742 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 117684 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117683 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 117624 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117623 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 117564 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 117563 gaggcgtgc 117555 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 97414 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 97472 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97473 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 97532 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97533 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 97592 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 97593 gaggcgtgc 97601
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 117691 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 117633 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117632 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 117573 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117572 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 117513 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 117512 gaggcgtgc 117504 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 97359 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 97417 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97418 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 97477 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97478 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 97537 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 97538 gaggcgtgc 97546
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 31509992 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 31510050 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31510051 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 31510110 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31510111 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 31510170 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 31510171 gaggcgtgc 31510179 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 166 tcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||| Sbjct: 31511288 tcccaaaaggtaacggaggcgtgc 31511311
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 82604 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 82546 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82545 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 82486 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82485 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 82426 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 82425 gaggcgtgc 82417 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 166 tcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||| Sbjct: 81308 tcccaaaaggtaacggaggcgtgc 81285
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 124455 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 124513 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124514 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 124573 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124574 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 124633 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 124634 gaggcgtgc 124642 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 16181 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 16239 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16240 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 16299 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16300 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 16359 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 16360 gaggcgtgc 16368
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 142989 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 143047 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143048 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 143107 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143108 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 143167 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 143168 gaggcgtgc 143176
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 95585 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 95643 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95644 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 95703 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95704 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 95763 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 95764 gaggcgtgc 95772
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 29649 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 29707 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29708 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 29767 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29768 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 29827 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 29828 gaggcgtgc 29836
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 9270341 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 9270399 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9270400 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 9270459 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9270460 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 9270519 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 9270520 gaggcgtgc 9270528 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 9229841 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 9229899 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9229900 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 9229959 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9229960 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 9230019 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 9230020 gaggcgtgc 9230028 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 9166429 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 9166487 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9166488 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 9166547 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9166548 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 9166607 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 9166608 gaggcgtgc 9166616 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 9058255 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 9058313 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9058314 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 9058373 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9058374 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 9058433 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 9058434 gaggcgtgc 9058442 Score = 240 bits (121), Expect = 3e-60 Identities = 142/150 (94%), Gaps = 1/150 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 23632855 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 23632797 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23632796 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 23632737 Query: 121 gccaagggacagtctcaggtagacagtttc 150 |||||||||||||||||||||||||||||| Sbjct: 23632736 gccaagggacagtctcaggtagacagtttc 23632707
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 10389193 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 10389251 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10389252 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 10389311 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10389312 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 10389371 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 10389372 gaggcgtgc 10389380 Score = 295 bits (149), Expect = 6e-77 Identities = 181/192 (94%), Gaps = 4/192 (2%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnn---cc 57 |||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 19940326 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccggggggggggcc 19940384 Query: 58 cgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19940385 cgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg 19940444 Query: 118 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19940445 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 19940504 Query: 178 acggaggcgtgc 189 |||||||||||| Sbjct: 19940505 acggaggcgtgc 19940516 Score = 291 bits (147), Expect = 1e-75 Identities = 181/193 (93%), Gaps = 5/193 (2%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 10274987 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 10274929 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagaccc---- 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10274928 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccaccc 10274869 Query: 117 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10274868 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 10274809 Query: 177 aacggaggcgtgc 189 ||||||||||||| Sbjct: 10274808 aacggaggcgtgc 10274796 Score = 178 bits (90), Expect = 1e-41 Identities = 114/123 (92%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct: 10275105 ggcctttcctgcgcagcttaggtggaagacgaag-aaggcccccttccgggggggcccga 10275047 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10275046 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 10274987 Query: 121 gcc 123 ||| Sbjct: 10274986 gcc 10274984 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 156 ggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||| Sbjct: 4266217 ggcgtaggcctcccaaaaggtaacggaggcgtgc 4266184
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 31600508 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 31600566 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31600567 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 31600626 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31600627 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 31600686 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 31600687 gaggcgtgc 31600695 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 166 tcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||| Sbjct: 31601804 tcccaaaaggtaacggaggcgtgc 31601827
>dbj|AK119524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E06, full insert sequence Length = 1809 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 847 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 905 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 906 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 965 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 1025 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 1026 gaggcgtgc 1034
>dbj|AK108459.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D06, full insert sequence Length = 1449 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 82 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 140 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 200 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 260 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 261 gaggcgtgc 269
>dbj|AK105825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E01, full insert sequence Length = 1345 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 1067 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 1125 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1126 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 1185 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 1245 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 1246 gaggcgtgc 1254
>dbj|AK105766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E02, full insert sequence Length = 2146 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 1263 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 1321 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 1381 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 1441 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 1442 gaggcgtgc 1450
>dbj|AK060344.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E03, full insert sequence Length = 1200 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 359 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 417 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 477 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 537 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 538 gaggcgtgc 546
>dbj|AK059370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E12, full insert sequence Length = 1741 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 69 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 127 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 187 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 247 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 248 gaggcgtgc 256
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 10395232 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 10395290 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10395291 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 10395350 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10395351 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 10395410 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 10395411 gaggcgtgc 10395419 Score = 295 bits (149), Expect = 6e-77 Identities = 181/192 (94%), Gaps = 4/192 (2%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnn---cc 57 |||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 19951602 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccggggggggggcc 19951660 Query: 58 cgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19951661 cgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg 19951720 Query: 118 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19951721 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 19951780 Query: 178 acggaggcgtgc 189 |||||||||||| Sbjct: 19951781 acggaggcgtgc 19951792 Score = 291 bits (147), Expect = 1e-75 Identities = 181/193 (93%), Gaps = 5/193 (2%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 10281026 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 10280968 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagaccc---- 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10280967 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccaccc 10280908 Query: 117 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10280907 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 10280848 Query: 177 aacggaggcgtgc 189 ||||||||||||| Sbjct: 10280847 aacggaggcgtgc 10280835 Score = 178 bits (90), Expect = 1e-41 Identities = 114/123 (92%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct: 10281144 ggcctttcctgcgcagcttaggtggaagacgaag-aaggcccccttccgggggggcccga 10281086 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10281085 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 10281026 Query: 121 gcc 123 ||| Sbjct: 10281025 gcc 10281023 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 156 ggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||| Sbjct: 4267038 ggcgtaggcctcccaaaaggtaacggaggcgtgc 4267005
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 117685 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 117627 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117626 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 117567 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117566 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 117507 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 117506 gaggcgtgc 117498 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 97354 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 97412 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97413 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 97472 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97473 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 97532 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 97533 gaggcgtgc 97541
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 117877 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 117819 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117818 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 117759 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117758 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 117699 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 117698 gaggcgtgc 117690 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 97017 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 97075 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97076 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 97135 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97136 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 97195 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 97196 gaggcgtgc 97204
>gb|U49840.1|OSU49840 Oryza sativa subsp. indica large ribosomal RNA gene, chloroplast gene encoding chloroplast rRNA, partial sequence Length = 1130 Score = 317 bits (160), Expect = 2e-83 Identities = 181/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 437 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 495 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 555 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 615 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 616 gaggcgtgc 624
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 309 bits (156), Expect = 4e-81 Identities = 177/185 (95%), Gaps = 1/185 (0%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 42697 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 42639 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42638 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 42579 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42578 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 42519 Query: 185 cgtgc 189 ||||| Sbjct: 42518 cgtgc 42514 Score = 309 bits (156), Expect = 4e-81 Identities = 177/185 (95%), Gaps = 1/185 (0%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 22420 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 22478 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22479 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 22538 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22539 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 22598 Query: 185 cgtgc 189 ||||| Sbjct: 22599 cgtgc 22603
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 309 bits (156), Expect = 4e-81 Identities = 180/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 5633646 ggcctttcctgtgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 5633588 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5633587 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 5633528 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5633527 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 5633468 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 5633467 gaggcgtgc 5633459 Score = 69.9 bits (35), Expect = 7e-09 Identities = 42/43 (97%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 6 ttcctgcgcagcttaggtggaaggcgaagtaaggcccccttcc 48 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 13451568 ttcctgcgcagcttaggtggaaggcgaag-aaggcccccttcc 13451527
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 309 bits (156), Expect = 4e-81 Identities = 180/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 814976 ggcctttcctgcgcagcttaggtggaaagcgaag-aaggcccccttccgggggggcccga 815034 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 815035 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 815094 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 815095 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 815154 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 815155 gaggcgtgc 815163
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 309 bits (156), Expect = 4e-81 Identities = 177/185 (95%), Gaps = 1/185 (0%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 121537 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 121479 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121478 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 121419 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121418 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 121359 Query: 185 cgtgc 189 ||||| Sbjct: 121358 cgtgc 121354 Score = 309 bits (156), Expect = 4e-81 Identities = 177/185 (95%), Gaps = 1/185 (0%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 101300 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 101358 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101359 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 101418 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101419 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 101478 Query: 185 cgtgc 189 ||||| Sbjct: 101479 cgtgc 101483
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 309 bits (156), Expect = 4e-81 Identities = 180/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 24184 ggcctttcctgcgcagcttaggtggaaagcgaag-aaggcccccttccgggggggcccga 24242 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24243 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 24302 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24303 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 24362 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 24363 gaggcgtgc 24371
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 309 bits (156), Expect = 4e-81 Identities = 180/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 93107 ggcctttcctgcgcagcttaggtggaaagcgaag-aaggcccccttccgggggggcccga 93165 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93166 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 93225 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93226 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 93285 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 93286 gaggcgtgc 93294
>dbj|AK059717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-G05, full insert sequence Length = 1555 Score = 309 bits (156), Expect = 4e-81 Identities = 180/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| Sbjct: 83 ggcctttcctgcgcagcttaggtgggaggcgaag-aaggcccccttccgggggggcccga 141 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 201 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 261 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 262 gaggcgtgc 270
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 309 bits (156), Expect = 4e-81 Identities = 180/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 5633635 ggcctttcctgtgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 5633577 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5633576 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 5633517 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5633516 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 5633457 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 5633456 gaggcgtgc 5633448 Score = 69.9 bits (35), Expect = 7e-09 Identities = 42/43 (97%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 6 ttcctgcgcagcttaggtggaaggcgaagtaaggcccccttcc 48 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 13405842 ttcctgcgcagcttaggtggaaggcgaag-aaggcccccttcc 13405801
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 309 bits (156), Expect = 4e-81 Identities = 180/189 (95%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 19239 ggcctttcctgtgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 19297 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19298 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 19357 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19358 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 19417 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 19418 gaggcgtgc 19426
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 309 bits (156), Expect = 4e-81 Identities = 177/185 (95%), Gaps = 1/185 (0%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 122254 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 122196 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122195 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 122136 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122135 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 122076 Query: 185 cgtgc 189 ||||| Sbjct: 122075 cgtgc 122071 Score = 309 bits (156), Expect = 4e-81 Identities = 177/185 (95%), Gaps = 1/185 (0%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 101977 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 102035 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102036 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 102095 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102096 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 102155 Query: 185 cgtgc 189 ||||| Sbjct: 102156 cgtgc 102160
>dbj|AK061169.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B02, full insert sequence Length = 1006 Score = 303 bits (153), Expect = 3e-79 Identities = 181/190 (95%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnn-cccg 59 |||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 122 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccggggggggcccg 180 Query: 60 agccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcg 240 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 300 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 301 ggaggcgtgc 310
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 301 bits (152), Expect = 1e-78 Identities = 179/189 (94%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 9239940 ggcctttcctacgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 9239882 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9239881 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 9239822 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 9239821 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaatg 9239762 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 9239761 gaggcgtgc 9239753
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 301 bits (152), Expect = 1e-78 Identities = 179/189 (94%), Gaps = 1/189 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 51153 ggcctttcctacgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 51095 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51094 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 51035 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 51034 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaatg 50975 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 50974 gaggcgtgc 50966
>dbj|AK059311.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G08, full insert sequence Length = 2105 Score = 301 bits (152), Expect = 1e-78 Identities = 180/189 (95%), Gaps = 2/189 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 81 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 139 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 199 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 200 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctccc-aaaggtaacg 258 Query: 181 gaggcgtgc 189 ||||||||| Sbjct: 259 gaggcgtgc 267
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 295 bits (149), Expect = 6e-77 Identities = 181/192 (94%), Gaps = 4/192 (2%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnn---cc 57 |||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 45717 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccggggggggggcc 45659 Query: 58 cgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 45658 cgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg 45599 Query: 118 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 45598 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 45539 Query: 178 acggaggcgtgc 189 |||||||||||| Sbjct: 45538 acggaggcgtgc 45527
>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0023M11, complete sequence Length = 120228 Score = 291 bits (147), Expect = 1e-75 Identities = 181/193 (93%), Gaps = 5/193 (2%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 116540 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 116482 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagaccc---- 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116481 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccaccc 116422 Query: 117 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116421 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 116362 Query: 177 aacggaggcgtgc 189 ||||||||||||| Sbjct: 116361 aacggaggcgtgc 116349 Score = 178 bits (90), Expect = 1e-41 Identities = 114/123 (92%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct: 116658 ggcctttcctgcgcagcttaggtggaagacgaag-aaggcccccttccgggggggcccga 116600 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116599 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 116540 Query: 121 gcc 123 ||| Sbjct: 116539 gcc 116537
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 291 bits (147), Expect = 1e-75 Identities = 181/193 (93%), Gaps = 5/193 (2%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 56312 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 56254 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagaccc---- 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56253 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccaccc 56194 Query: 117 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56193 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 56134 Query: 177 aacggaggcgtgc 189 ||||||||||||| Sbjct: 56133 aacggaggcgtgc 56121 Score = 178 bits (90), Expect = 1e-41 Identities = 114/123 (92%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct: 56430 ggcctttcctgcgcagcttaggtggaagacgaag-aaggcccccttccgggggggcccga 56372 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56371 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 56312 Query: 121 gcc 123 ||| Sbjct: 56311 gcc 56309
>dbj|AK060185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-C09, full insert sequence Length = 886 Score = 289 bits (146), Expect = 4e-75 Identities = 167/175 (95%), Gaps = 1/175 (0%) Strand = Plus / Plus Query: 15 agcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagtgagat 74 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct: 2 agcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagccatcagtgagat 60 Query: 75 accactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggacagtc 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 accactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggacagtc 120 Query: 135 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 175
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 281 bits (142), Expect = 9e-73 Identities = 179/190 (94%), Gaps = 4/190 (2%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||| |||| ||||| Sbjct: 117713 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggccc--ttccgggggggcccga 117657 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcg 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 117656 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcaagacccgcg 117597 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117596 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 117537 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 117536 ggaggcgtgc 117527 Score = 281 bits (142), Expect = 9e-73 Identities = 179/190 (94%), Gaps = 4/190 (2%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||| |||| ||||| Sbjct: 97405 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggccc--ttccgggggggcccga 97461 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcg 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 97462 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcaagacccgcg 97521 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97522 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 97581 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 97582 ggaggcgtgc 97591
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 280 bits (141), Expect = 4e-72 Identities = 176/186 (94%), Gaps = 3/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct: 121480 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcc-gagcca 121423 Query: 65 tcagtgagataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggcc 123 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 121422 tcagtgagataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggcc 121363 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121362 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 121303 Query: 184 gcgtgc 189 |||||| Sbjct: 121302 gcgtgc 121297 Score = 280 bits (141), Expect = 4e-72 Identities = 176/186 (94%), Gaps = 3/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct: 101257 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcc-gagcca 101314 Query: 65 tcagtgagataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggcc 123 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 101315 tcagtgagataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggcc 101374 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101375 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 101434 Query: 184 gcgtgc 189 |||||| Sbjct: 101435 gcgtgc 101440
>emb|Z00028.1|CHZMRRNA Zea mays chloroplast rRNA-operon Length = 8862 Score = 280 bits (141), Expect = 4e-72 Identities = 176/186 (94%), Gaps = 3/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct: 7610 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcc-gagcca 7667 Query: 65 tcagtgagataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggcc 123 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 7668 tcagtgagataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggcc 7727 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7728 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 7787 Query: 184 gcgtgc 189 |||||| Sbjct: 7788 gcgtgc 7793
>emb|X01365.1|CHZM23S Maize chloroplast DNA for 4.5S and 23S ribosomal RNA Length = 3079 Score = 280 bits (141), Expect = 4e-72 Identities = 176/186 (94%), Gaps = 3/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct: 2198 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcc-gagcca 2255 Query: 65 tcagtgagataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggcc 123 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2256 tcagtgagataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggcc 2315 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2316 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 2375 Query: 184 gcgtgc 189 |||||| Sbjct: 2376 gcgtgc 2381
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 272 bits (137), Expect = 9e-70 Identities = 177/190 (93%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 132108 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 132050 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 132049 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 131990 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131989 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 131930 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 131929 ggaggcgtgc 131920 Score = 272 bits (137), Expect = 9e-70 Identities = 177/190 (93%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 105863 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 105921 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 105922 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 105981 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105982 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 106041 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 106042 ggaggcgtgc 106051
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 266 bits (134), Expect = 6e-68 Identities = 134/134 (100%) Strand = Plus / Plus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacc 115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33580908 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacc 33580967 Query: 116 cgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaagg 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33580968 cgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaagg 33581027 Query: 176 taacggaggcgtgc 189 |||||||||||||| Sbjct: 33581028 taacggaggcgtgc 33581041
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 266 bits (134), Expect = 6e-68 Identities = 134/134 (100%) Strand = Plus / Plus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacc 115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126105 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacc 126164 Query: 116 cgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaagg 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126165 cgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaagg 126224 Query: 176 taacggaggcgtgc 189 |||||||||||||| Sbjct: 126225 taacggaggcgtgc 126238
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 264 bits (133), Expect = 2e-67 Identities = 176/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 133786 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttcggggggggcccga 133728 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 133727 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 133668 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133667 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133608 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133607 ggaggcgtgc 133598 Score = 264 bits (133), Expect = 2e-67 Identities = 176/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 108120 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttcggggggggcccga 108178 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 108179 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 108238 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108239 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 108298 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 108299 ggaggcgtgc 108308
>gb|AF254866.1|AF254866 Amaranthus tricolor 23S ribosomal RNA, complete sequence; chloroplast gene for chloroplast product Length = 3322 Score = 264 bits (133), Expect = 2e-67 Identities = 173/186 (93%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 2614 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 2672 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||| Sbjct: 2673 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctgcgggcc 2732 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2733 aagggacagtctcaggtagacagttcctatggggcgtaggcctcccaaaaggtaacggag 2792 Query: 184 gcgtgc 189 |||||| Sbjct: 2793 gcgtgc 2798
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 264 bits (133), Expect = 2e-67 Identities = 176/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 134065 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttcggggggggcccga 134007 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 134006 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 133947 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133946 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133887 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133886 ggaggcgtgc 133877 Score = 264 bits (133), Expect = 2e-67 Identities = 176/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 108342 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttcggggggggcccga 108400 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 108401 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 108460 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108461 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 108520 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 108521 ggaggcgtgc 108530
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 264 bits (133), Expect = 2e-67 Identities = 173/186 (93%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 131840 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 131782 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 131781 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 131722 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131721 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 131662 Query: 184 gcgtgc 189 |||||| Sbjct: 131661 gcgtgc 131656 Score = 264 bits (133), Expect = 2e-67 Identities = 173/186 (93%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 106809 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 106867 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 106868 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 106927 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106928 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 106987 Query: 184 gcgtgc 189 |||||| Sbjct: 106988 gcgtgc 106993
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 264 bits (133), Expect = 2e-67 Identities = 176/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 137594 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 137536 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 137535 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 137476 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137475 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 137416 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 137415 ggaggcgtgc 137406 Score = 264 bits (133), Expect = 2e-67 Identities = 176/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 111705 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 111763 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 111764 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 111823 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111824 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 111883 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 111884 ggaggcgtgc 111893
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 256 bits (129), Expect = 5e-65 Identities = 172/186 (92%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| ||||||||| Sbjct: 137385 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccgagcca 137327 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 137326 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 137267 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137266 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 137207 Query: 184 gcgtgc 189 |||||| Sbjct: 137206 gcgtgc 137201 Score = 256 bits (129), Expect = 5e-65 Identities = 172/186 (92%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| ||||||||| Sbjct: 111712 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccgagcca 111770 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 111771 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 111830 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111831 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 111890 Query: 184 gcgtgc 189 |||||| Sbjct: 111891 gcgtgc 111896
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 134185 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 134127 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 134126 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 134067 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134066 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 134007 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 134006 ggaggcgtgc 133997 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 108445 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 108503 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 108504 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 108563 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108564 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 108623 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 108624 ggaggcgtgc 108633
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 138243 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 138185 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 138184 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 138125 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138124 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 138065 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 138064 ggaggcgtgc 138055 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 111817 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 111875 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 111876 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 111935 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111936 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 111995 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 111996 ggaggcgtgc 112005
>gb|AY251296.1| Stellaria longipes 23S ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 480 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 122 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 180 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 |||||| ||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 181 gccatctgtgagataccactctggaagagcaagaattctaaccttgtgtcaggacctacg 240 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 300 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 301 ggaggcgtgc 310
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 139987 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 139929 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 139928 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 139869 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139868 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 139809 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 139808 ggaggcgtgc 139799 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 113670 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 113728 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 113729 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 113788 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113789 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 113848 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 113849 ggaggcgtgc 113858
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 132872 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 132814 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 132813 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 132754 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132753 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 132694 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 132693 ggaggcgtgc 132684 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 107410 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 107468 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 107469 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 107528 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107529 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 107588 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 107589 ggaggcgtgc 107598
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 256 bits (129), Expect = 5e-65 Identities = 172/186 (92%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 129673 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 129615 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 129614 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 129555 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129554 aagggacattctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 129495 Query: 184 gcgtgc 189 |||||| Sbjct: 129494 gcgtgc 129489 Score = 256 bits (129), Expect = 5e-65 Identities = 172/186 (92%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 103772 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 103830 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 103831 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 103890 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 103891 aagggacattctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 103950 Query: 184 gcgtgc 189 |||||| Sbjct: 103951 gcgtgc 103956
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 133430 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 133372 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 133371 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 133312 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133311 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133252 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133251 ggaggcgtgc 133242 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 107606 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 107664 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 107665 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 107724 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107725 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 107784 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 107785 ggaggcgtgc 107794
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 256 bits (129), Expect = 5e-65 Identities = 172/186 (92%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| ||||||||| Sbjct: 130879 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccgagcca 130821 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 130820 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 130761 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130760 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 130701 Query: 184 gcgtgc 189 |||||| Sbjct: 130700 gcgtgc 130695 Score = 256 bits (129), Expect = 5e-65 Identities = 172/186 (92%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| ||||||||| Sbjct: 105885 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccgagcca 105943 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 105944 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 106003 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106004 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 106063 Query: 184 gcgtgc 189 |||||| Sbjct: 106064 gcgtgc 106069
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 134477 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 134419 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 134418 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 134359 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134358 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 134299 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 134298 ggaggcgtgc 134289 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 107948 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 108006 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 108007 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 108066 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108067 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 108126 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 108127 ggaggcgtgc 108136
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 133566 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 133508 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 133507 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 133448 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133447 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133388 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133387 ggaggcgtgc 133378 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 107777 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 107835 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 107836 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 107895 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107896 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 107955 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 107956 ggaggcgtgc 107965
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 133564 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 133506 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 133505 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 133446 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133445 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133386 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133385 ggaggcgtgc 133376 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 107774 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 107832 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 107833 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 107892 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107893 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 107952 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 107953 ggaggcgtgc 107962
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 133476 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 133418 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 133417 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 133358 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133357 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133298 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133297 ggaggcgtgc 133288 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 107652 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 107710 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 107711 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 107770 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107771 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 107830 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 107831 ggaggcgtgc 107840
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 134183 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 134125 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 134124 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 134065 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134064 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 134005 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 134004 ggaggcgtgc 133995 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 108443 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 108501 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 108502 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 108561 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108562 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 108621 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 108622 ggaggcgtgc 108631
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 133914 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 133856 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 133855 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 133796 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133795 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133736 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133735 ggaggcgtgc 133726 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 108224 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 108282 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 108283 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 108342 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108343 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 108402 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 108403 ggaggcgtgc 108412
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 133443 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 133385 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 133384 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 133325 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133324 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 133265 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 133264 ggaggcgtgc 133255 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 107619 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 107677 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 107678 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 107737 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107738 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 107797 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 107798 ggaggcgtgc 107807
>gb|J01446.1|TOBCPRG23 Tobacco chloroplast 23S and 4.5S rRNA genes Length = 3166 Score = 256 bits (129), Expect = 5e-65 Identities = 175/190 (92%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 2209 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 2267 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 2268 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 2327 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2328 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 2387 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 2388 ggaggcgtgc 2397
>gb|AY109723.1| Zea mays CL825_1 mRNA sequence Length = 3035 Score = 252 bits (127), Expect = 8e-64 Identities = 220/253 (86%) Strand = Plus / Plus Query: 186 gtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaact 245 |||||||||| ||||| |||||||| |||||||| |||||||||||| |||| ||||| | Sbjct: 1861 gtgctgctcggaacagaccaatgcaaggtgatgatgagagctacaatctggtactcaatt 1920 Query: 246 tcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgta 305 |||||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||| Sbjct: 1921 tcaaggaagctgtgtttggtgtggagaaggagattgagataaccagattggaaggctgta 1980 Query: 306 atacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgtg 365 | || ||||| |||||||| |||||||| || |||||| ||||||| ||||||||||||| Sbjct: 1981 acacctgcgacggaagtggtgccaagccaggtacaaaggcaaccacatgtaaaacttgtg 2040 Query: 366 gtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangtat 425 | |||||||||||||| | || || |||||| ||||| |||||||||||||| || || | Sbjct: 2041 gaggtcagggccaggtagtctcctccacaagaacaccgcttggaatattccagcaagtct 2100 Query: 426 ncacatgcaatac 438 ||| |||||||| Sbjct: 2101 ccacctgcaatac 2113
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 248 bits (125), Expect = 1e-62 Identities = 174/190 (91%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 137464 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 137406 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||| || Sbjct: 137405 gccatcagtgagataccactctggaagagctagaattctaaccttgtgccaggacctacg 137346 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 137345 ggccaagggacagtctcaggcagacagtttctatggggcgtaggcctcccaaaaggtaac 137286 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 137285 ggaggcgtgc 137276 Score = 248 bits (125), Expect = 1e-62 Identities = 174/190 (91%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 112481 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 112539 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||| || Sbjct: 112540 gccatcagtgagataccactctggaagagctagaattctaaccttgtgccaggacctacg 112599 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 112600 ggccaagggacagtctcaggcagacagtttctatggggcgtaggcctcccaaaaggtaac 112659 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 112660 ggaggcgtgc 112669
>gb|AY029747.1| Populus deltoides 23S ribosomal RNA, 4.5S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence; chloroplast genes for chloroplast products Length = 5157 Score = 248 bits (125), Expect = 1e-62 Identities = 174/190 (91%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 3888 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 3946 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||| ||||||||||||||||||||||| || | |||||||||||||||||| ||| || Sbjct: 3947 gccgtcagtgagataccactctggaagggcaagaattctaaccttgtgtcaggacctacg 4006 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4007 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 4066 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 4067 ggaggcgtgc 4076
>gb|AF355760.1| Rhizophora mucronata 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2902 Score = 248 bits (125), Expect = 1e-62 Identities = 174/190 (91%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct: 2165 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggtccaa 2223 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | ||||||||||||| |||| ||| || Sbjct: 2224 gccatcagtgagataccactctggaagagctagaattctaaccttgtttcaggacctacg 2283 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 2343 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 2344 ggaggcgtgc 2353
>gb|M75722.1|ALSCP23SA Alnus incana chloroplast 23S ribosomal RNA (23S rRNA) gene Length = 2811 Score = 248 bits (125), Expect = 1e-62 Identities = 174/190 (91%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| Sbjct: 2116 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggcccga 2174 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 2175 gccgtcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 2234 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2235 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 2294 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 2295 ggaggcgtgc 2304
>emb|AJ005357.1|ATA005357 Aesculus turbinata microsatellite DNA, locus AT3D6 Length = 744 Score = 244 bits (123), Expect = 2e-61 Identities = 171/187 (91%), Gaps = 3/187 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| ||||||||| Sbjct: 126 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccgagcca 184 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg--cgggc 122 ||||||||||||||||||||||||||| | |||||||||||||||||| || ||||| Sbjct: 185 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctaacgggc 244 Query: 123 caagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgga 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 caagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgga 304 Query: 183 ggcgtgc 189 ||||||| Sbjct: 305 ggcgtgc 311
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 242 bits (122), Expect = 8e-61 Identities = 171/187 (91%), Gaps = 2/187 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||| | ||||| Sbjct: 125752 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttgcgggggggcccga 125694 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg-cg 119 ||||||||||||||||||||||||||||||| | ||||||||||||||||||| || || Sbjct: 125693 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcagaacctacg 125634 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125633 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 125574 Query: 180 ggaggcg 186 ||||||| Sbjct: 125573 ggaggcg 125567 Score = 242 bits (122), Expect = 8e-61 Identities = 171/187 (91%), Gaps = 2/187 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||| ||||||| |||||| |||| | ||||| Sbjct: 109170 ggcctttcctgcgcagcttaggtggagggcgaag-aaggcctccttgcgggggggcccga 109228 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg-cg 119 ||||||||||||||||||||||||||||||| | ||||||||||||||||||| || || Sbjct: 109229 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcagaacctacg 109288 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109289 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 109348 Query: 180 ggaggcg 186 ||||||| Sbjct: 109349 ggaggcg 109355
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 240 bits (121), Expect = 3e-60 Identities = 170/186 (91%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| |||||||| Sbjct: 130656 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggtccgagcca 130598 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| || |||||| Sbjct: 130597 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacgtacgggcc 130538 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130537 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 130478 Query: 184 gcgtgc 189 |||||| Sbjct: 130477 gcgtgc 130472 Score = 240 bits (121), Expect = 3e-60 Identities = 170/186 (91%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| |||||||| Sbjct: 106222 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggtccgagcca 106280 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| || |||||| Sbjct: 106281 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacgtacgggcc 106340 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106341 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 106400 Query: 184 gcgtgc 189 |||||| Sbjct: 106401 gcgtgc 106406
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 240 bits (121), Expect = 3e-60 Identities = 142/150 (94%), Gaps = 1/150 (0%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 75536 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccga 75478 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75477 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 75418 Query: 121 gccaagggacagtctcaggtagacagtttc 150 |||||||||||||||||||||||||||||| Sbjct: 75417 gccaagggacagtctcaggtagacagtttc 75388
>gb|AF355762.1| Ceriops tagal 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2873 Score = 240 bits (121), Expect = 3e-60 Identities = 173/190 (91%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct: 2136 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggtccaa 2194 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 2195 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 2254 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 2255 ggccaagggacagtctcagttggacagtttctatggggcgtaggcctcccaaaaggtaac 2314 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 2315 ggaggcgtgc 2324
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 240 bits (121), Expect = 3e-60 Identities = 170/186 (91%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| |||||||| Sbjct: 130649 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggtccgagcca 130591 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| || |||||| Sbjct: 130590 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacgtacgggcc 130531 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130530 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 130471 Query: 184 gcgtgc 189 |||||| Sbjct: 130470 gcgtgc 130465 Score = 240 bits (121), Expect = 3e-60 Identities = 170/186 (91%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| |||||| |||||||| Sbjct: 106220 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggtccgagcca 106278 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| || |||||| Sbjct: 106279 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacgtacgggcc 106338 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106339 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 106398 Query: 184 gcgtgc 189 |||||| Sbjct: 106399 gcgtgc 106404
>gb|AF355766.1| Amaranthus hypochondriacus 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2899 Score = 238 bits (120), Expect = 1e-59 Identities = 163/177 (92%), Gaps = 2/177 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 2161 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 2219 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| Sbjct: 2220 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 2279 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2280 aagggacagtctcaggtagacagtttctatggggggtaggcctcccaaaaggtaacg 2336
>dbj|AK059158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D02, full insert sequence Length = 1502 Score = 238 bits (120), Expect = 1e-59 Identities = 120/120 (100%) Strand = Plus / Plus Query: 70 gagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaaggga 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaaggga 60 Query: 130 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 120
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 236 bits (119), Expect = 5e-59 Identities = 172/188 (91%), Gaps = 3/188 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 134823 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 134765 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 134764 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 134705 Query: 120 g-gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134704 gtgccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 134645 Query: 179 cggaggcg 186 |||||||| Sbjct: 134644 cggaggcg 134637 Score = 236 bits (119), Expect = 5e-59 Identities = 172/188 (91%), Gaps = 3/188 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 108734 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 108792 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| || Sbjct: 108793 gccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacg 108852 Query: 120 g-gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108853 gtgccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 108912 Query: 179 cggaggcg 186 |||||||| Sbjct: 108913 cggaggcg 108920
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 234 bits (118), Expect = 2e-58 Identities = 174/191 (91%), Gaps = 3/191 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnnc-ccg 59 |||||||||||||||||||||||||||||||||| |||||| |||||| ||| Sbjct: 129552 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccggggggggtccg 129494 Query: 60 agccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgc 118 |||||||||||||||||||||||||||||||| | |||||||||||||||||| || | Sbjct: 129493 agccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacgtac 129434 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129433 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 129374 Query: 179 cggaggcgtgc 189 ||||||||||| Sbjct: 129373 cggaggcgtgc 129363 Score = 234 bits (118), Expect = 2e-58 Identities = 174/191 (91%), Gaps = 3/191 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnnc-ccg 59 |||||||||||||||||||||||||||||||||| |||||| |||||| ||| Sbjct: 105083 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccggggggggtccg 105141 Query: 60 agccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgc 118 |||||||||||||||||||||||||||||||| | |||||||||||||||||| || | Sbjct: 105142 agccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacgtac 105201 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105202 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 105261 Query: 179 cggaggcgtgc 189 ||||||||||| Sbjct: 105262 cggaggcgtgc 105272
>gb|AF355761.1| Rhizophora stylosa 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2894 Score = 234 bits (118), Expect = 2e-58 Identities = 175/193 (90%), Gaps = 5/193 (2%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct: 2153 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggtccaa 2211 Query: 61 gccatcagtgagataccactctggaagagctcggattctaacc---ttgtgtcag-accc 116 ||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||| Sbjct: 2212 gccatcagtgagataccactctggaagagctagaattctaaccctcttgtgtcaggacct 2271 Query: 117 gcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 176 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2272 acgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggt 2331 Query: 177 aacggaggcgtgc 189 ||||||||||||| Sbjct: 2332 aacggaggcgtgc 2344
>dbj|AK063570.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G05, full insert sequence Length = 1023 Score = 234 bits (118), Expect = 2e-58 Identities = 118/118 (100%) Strand = Plus / Plus Query: 72 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 60 Query: 132 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 118
>gb|AF355764.1| Rhizophora mangle 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2883 Score = 232 bits (117), Expect = 8e-58 Identities = 173/190 (91%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct: 2147 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggtccaa 2205 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcg 119 ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| || Sbjct: 2206 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 2265 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 2266 ggccaagggacagtctcaggtagacagtttgtatggggcgta-gcctcccaaaaggtaac 2324 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 2325 ggaggcgtgc 2334
>gb|AF525938.2| Casuarina equisetifolia 23S ribosomal RNA and 4.5S ribosomal RNA genes, complete sequence; chloroplast Length = 3069 Score = 224 bits (113), Expect = 2e-55 Identities = 172/190 (90%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||||| |||||||||||| ||||||| | ||||||||||| || || Sbjct: 2131 ggcctttcctgcg-agcttaggtggagggcgaag-atggcccccttccgggggggcctga 2188 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 2189 gccgtcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 2248 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2249 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 2308 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 2309 ggaggcgtgc 2318
>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04, complete sequence Length = 168424 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 158252 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 158193 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 158192 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 158133 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 158132 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 158073 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 158072 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 158013 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 158012 tccacctgcaatac 157999 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 149364 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 149305 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 149304 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 149245 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 149244 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 149185 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 149184 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 149125 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 149124 tccacctgcaatac 149111 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 140527 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 140468 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 140467 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 140408 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 140407 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 140348 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 140347 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 140288 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 140287 tccacctgcaatac 140274
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 15503231 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 15503172 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 15503171 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 15503112 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 15503111 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 15503052 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 15503051 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 15502992 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 15502991 tccacctgcaatac 15502978 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 15494343 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 15494284 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 15494283 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 15494224 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 15494223 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 15494164 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 15494163 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 15494104 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 15494103 tccacctgcaatac 15494090 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 15485506 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 15485447 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 15485446 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 15485387 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 15485386 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 15485327 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 15485326 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 15485267 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 15485266 tccacctgcaatac 15485253
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 222 bits (112), Expect = 7e-55 Identities = 164/181 (90%), Gaps = 2/181 (1%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||| ||||||| ||||||||||||| || |||||| |||| Sbjct: 88377 tgcgcagcttaggtggagggcgaag-aaggcccccttccgggggggcctgagccaccagt 88435 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaaggg 128 |||||||||||||||||||||| | |||||||||||| ||||| ||| ||||||||||| Sbjct: 88436 gagataccactctggaagagctagaattctaaccttgcgtcaggacctacgggccaaggg 88495 Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88496 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 88555 Query: 189 c 189 | Sbjct: 88556 c 88556
>gb|AF393612.1| Sphagnum rubellum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3033 Score = 222 bits (112), Expect = 7e-55 Identities = 164/181 (90%), Gaps = 2/181 (1%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||||||| ||||||||||||| | |||||||||||| Sbjct: 2135 tgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggctcgagccatcagt 2193 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaaggg 128 || |||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||| Sbjct: 2194 gaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggccaaggg 2253 Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2254 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 2313 Query: 189 c 189 | Sbjct: 2314 c 2314
>dbj|AK101370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035M17, full insert sequence Length = 2127 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Plus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 896 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 955 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 956 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 1015 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 1016 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 1075 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 1076 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 1135 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 1136 tccacctgcaatac 1149
>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0049D13, complete sequence Length = 136942 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 27737 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 27678 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 27677 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 27618 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 27617 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 27558 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 27557 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 27498 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 27497 tccacctgcaatac 27484 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 18849 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 18790 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 18789 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 18730 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 18729 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 18670 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 18669 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 18610 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 18609 tccacctgcaatac 18596 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Minus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 10012 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 9953 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 9952 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 9893 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 9892 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 9833 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 9832 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 9773 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 9772 tccacctgcaatac 9759
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 222 bits (112), Expect = 7e-55 Identities = 164/181 (90%), Gaps = 2/181 (1%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||| ||||||| ||||||||||||| || |||||| |||| Sbjct: 90465 tgcgcagcttaggtggagggcgaag-aaggcccccttccgggggggcctgagccaccagt 90523 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaaggg 128 |||||||||||||||||||||| | |||||||||||| ||||| ||| ||||||||||| Sbjct: 90524 gagataccactctggaagagctagaattctaaccttgcgtcaggacctacgggccaaggg 90583 Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90584 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 90643 Query: 189 c 189 | Sbjct: 90644 c 90644
>dbj|AB055405.1| Oryza sativa mRNA for DNAJ homologue, complete cds Length = 1987 Score = 222 bits (112), Expect = 7e-55 Identities = 217/254 (85%) Strand = Plus / Plus Query: 185 cgtgctgctcgtaacaggccaatgcagggtgatgacgagagctacaatttggtcctcaac 244 ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 746 cgtgctgctcggaacagaccaatgcagggtgatgatgaggcctacaatctggtactcaat 805 Query: 245 ttcaaggaagcggtgtttggtgtagagaaagagattgagataactaggctggaaggctgt 304 |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| Sbjct: 806 ttcaaggaagcggtgtttggtgtagagaaagaaattgagatcaccagactggaaggctgt 865 Query: 305 aatacttgcgatggaagtggcgccaagcctggcacaaagccaaccacgtgtaaaacttgt 364 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct: 866 aatacatgtgatggaactggtgccaagcctggaacgaaaccaaccacatgcaaaacatgt 925 Query: 365 ggtggtcagggccaggtggnctnctncacaaggacaccacttggaatattccancangta 424 || || ||||| || |||| || || ||||| || ||||||||||||||||| || || Sbjct: 926 ggaggacagggacaagtggtctcctcaacaagaacgccacttggaatattccagcaggtc 985 Query: 425 tncacatgcaatac 438 | ||| |||||||| Sbjct: 986 tccacctgcaatac 999
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 216 bits (109), Expect = 5e-53 Identities = 171/190 (90%), Gaps = 3/190 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||| ||||||||||||||||||||||||||||| |||||| |||||| || || Sbjct: 140764 ggcccttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcctga 140706 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||| ||||||| ||| || Sbjct: 140705 gccatcagtgagataccactctggaagggctagaattctaacct-gtgtcaggacctacg 140647 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140646 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 140587 Query: 180 ggaggcgtgc 189 ||||| |||| Sbjct: 140586 ggaggtgtgc 140577 Score = 216 bits (109), Expect = 5e-53 Identities = 171/190 (90%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||| ||||||||||||||||||||||||||||| |||||| |||||| || || Sbjct: 112564 ggcccttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcctga 112622 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||| ||| | |||||||||| ||||||| ||| || Sbjct: 112623 gccatcagtgagataccactctggaagggctagaattctaacct-gtgtcaggacctacg 112681 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112682 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 112741 Query: 180 ggaggcgtgc 189 ||||| |||| Sbjct: 112742 ggaggtgtgc 112751
>gb|AF355763.1| Rhizophora apiculata 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2913 Score = 216 bits (109), Expect = 5e-53 Identities = 172/190 (90%), Gaps = 4/190 (2%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct: 2178 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggtccaa 2236 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcg 119 ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| || Sbjct: 2237 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 2296 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 2297 ggccaagggacagtctca-gtagacagtttctatggggcgta-gcttcccaaaaggtaac 2354 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 2355 ggaggcgtgc 2364
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 216 bits (109), Expect = 5e-53 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||| ||||||| |||||| |||||| |||||||| Sbjct: 128410 tttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggtccgagcca 128352 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg-cgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||| |||| || ||| || Sbjct: 128351 tcagtgagataccactctggaagagctagaattctaaccttgtgccagaacctacggacc 128292 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 128291 aagggacagtctcaggtagacagtttctatggggcgtaggcctccccaaaggtaacggag 128232 Query: 184 gcgtgc 189 |||||| Sbjct: 128231 gcgtgc 128226 Score = 216 bits (109), Expect = 5e-53 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||| ||||||| |||||| |||||| |||||||| Sbjct: 104046 tttcctgcgcagcttaggtggagggcgaag-aaggcctccttccgggggggtccgagcca 104104 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg-cgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||| |||| || ||| || Sbjct: 104105 tcagtgagataccactctggaagagctagaattctaaccttgtgccagaacctacggacc 104164 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 104165 aagggacagtctcaggtagacagtttctatggggcgtaggcctccccaaaggtaacggag 104224 Query: 184 gcgtgc 189 |||||| Sbjct: 104225 gcgtgc 104230
>emb|X06235.1|MIOBRRNP Oenothera berteriana mitDNA with part of plastid rRNA operon Length = 2900 Score = 214 bits (108), Expect = 2e-52 Identities = 154/169 (91%), Gaps = 2/169 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 ||||||||||||||| |||||||||||||||||| |||||| |||||| ||||| Sbjct: 1724 ggcctttcctgcgcaccttaggtggaaggcgaag-aaggcctccttccgggggggcccga 1782 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcg 119 ||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct: 1783 gccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacg 1842 Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcc 168 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1843 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcc 1891
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 212 bits (107), Expect = 7e-52 Identities = 162/180 (90%), Gaps = 2/180 (1%) Strand = Plus / Minus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||||||| ||||||||||||| | |||||||||||| Sbjct: 116016 tgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggctcgagccatcagt 115958 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaaggga 129 || |||||||||| |||||||| | ||||||||||||||||| | |||||||||||| Sbjct: 115957 gaaataccactctagaagagctagaattctaaccttgtgtca-atttacgggccaaggga 115899 Query: 130 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115898 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 115839 Score = 212 bits (107), Expect = 7e-52 Identities = 162/180 (90%), Gaps = 2/180 (1%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||||||| ||||||||||||| | |||||||||||| Sbjct: 92086 tgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggctcgagccatcagt 92144 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaaggga 129 || |||||||||| |||||||| | ||||||||||||||||| | |||||||||||| Sbjct: 92145 gaaataccactctagaagagctagaattctaaccttgtgtca-atttacgggccaaggga 92203 Query: 130 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92204 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 92263
>gb|AF355765.1| Amaranthus hybridus 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2927 Score = 210 bits (106), Expect = 3e-51 Identities = 170/187 (90%), Gaps = 5/187 (2%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 2191 tttcctgcgcagcttaggtggaaggcgaag-aaggcccccttccgggggggcccgagcca 2249 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||| Sbjct: 2250 tcagtgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggcc 2309 Query: 124 aagggacagtc-tcaggtagacagtttctatggggcgtagg-cctcccaaaaggtaacgg 181 ||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||| Sbjct: 2310 aagggacagtcttcaggtagacagtttgta-ggggcgtaggccctcccaaaaggtaacgg 2368 Query: 182 aggcgtg 188 ||||||| Sbjct: 2369 aggcgtg 2375
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 208 bits (105), Expect = 1e-50 Identities = 166/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||| ||| ||| |||||| ||||| || |||||| Sbjct: 129748 tttcctgcgcagcttaggtggagggcaaag-aaggcctccttctgggggggccagagcca 129690 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||| ||| ||| |||||| Sbjct: 129689 tcagtgagataccactctggaagagctagaattctaaccttgtgccaggacctacgggcc 129630 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129629 gagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 129570 Query: 184 gcgtgc 189 |||||| Sbjct: 129569 gcgtgc 129564 Score = 208 bits (105), Expect = 1e-50 Identities = 166/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||| ||| ||| |||||| ||||| || |||||| Sbjct: 105646 tttcctgcgcagcttaggtggagggcaaag-aaggcctccttctgggggggccagagcca 105704 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||| ||| ||| |||||| Sbjct: 105705 tcagtgagataccactctggaagagctagaattctaaccttgtgccaggacctacgggcc 105764 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105765 gagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 105824 Query: 184 gcgtgc 189 |||||| Sbjct: 105825 gcgtgc 105830
>emb|AJ864703.1| Fragaria vesca partial chloroplast 23S rRNA gene Length = 500 Score = 206 bits (104), Expect = 4e-50 Identities = 126/132 (95%), Gaps = 1/132 (0%) Strand = Plus / Minus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccg 117 ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| Sbjct: 419 gagccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggaccta 360 Query: 118 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 177 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 cgggccaagggacattctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 300 Query: 178 acggaggcgtgc 189 |||||||||||| Sbjct: 299 acggaggcgtgc 288
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 206 bits (104), Expect = 4e-50 Identities = 162/181 (89%), Gaps = 2/181 (1%) Strand = Plus / Minus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||||| | ||||||||||||| | |||||||||||| Sbjct: 144415 tgcgcagcttaggtggaaggcgagg-aaggcccccttccgggggggctcgagccatcagt 144357 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaaggg 128 || |||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||| Sbjct: 144356 gaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggccaaggg 144297 Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144296 acagtcttaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 144237 Query: 189 c 189 | Sbjct: 144236 c 144236 Score = 206 bits (104), Expect = 4e-50 Identities = 162/181 (89%), Gaps = 2/181 (1%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||||| | ||||||||||||| | |||||||||||| Sbjct: 114047 tgcgcagcttaggtggaaggcgagg-aaggcccccttccgggggggctcgagccatcagt 114105 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaaggg 128 || |||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||| Sbjct: 114106 gaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggccaaggg 114165 Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114166 acagtcttaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 114225 Query: 189 c 189 | Sbjct: 114226 c 114226
>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome Length = 70028 Score = 204 bits (103), Expect = 2e-49 Identities = 128/135 (94%), Gaps = 1/135 (0%) Strand = Plus / Minus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-ac 114 |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || Sbjct: 50522 cccgagccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggac 50463 Query: 115 ccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 174 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50462 ctacgggccgcgggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 50403 Query: 175 gtaacggaggcgtgc 189 ||||||||||||||| Sbjct: 50402 gtaacggaggcgtgc 50388 Score = 204 bits (103), Expect = 2e-49 Identities = 128/135 (94%), Gaps = 1/135 (0%) Strand = Plus / Plus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-ac 114 |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || Sbjct: 39306 cccgagccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggac 39365 Query: 115 ccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 174 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39366 ctacgggccgcgggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 39425 Query: 175 gtaacggaggcgtgc 189 ||||||||||||||| Sbjct: 39426 gtaacggaggcgtgc 39440 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaag 34 |||||||||||||||||||||||||||||| Sbjct: 50563 tttcctgcgcagcttaggtggaaggcgaag 50534 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaag 34 |||||||||||||||||||||||||||||| Sbjct: 39265 tttcctgcgcagcttaggtggaaggcgaag 39294
>emb|X62099.1|CHEVIARRN E.virginiana plastid ribosomal RNA operon, trnI and trnA pseudogenes Length = 7395 Score = 204 bits (103), Expect = 2e-49 Identities = 128/135 (94%), Gaps = 1/135 (0%) Strand = Plus / Plus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-ac 114 |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || Sbjct: 6234 cccgagccatcagtgagataccactctggaagagctagaattctaaccttgtgtcaggac 6293 Query: 115 ccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 174 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6294 ctacgggccgcgggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 6353 Query: 175 gtaacggaggcgtgc 189 ||||||||||||||| Sbjct: 6354 gtaacggaggcgtgc 6368 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaag 34 |||||||||||||||||||||||||||||| Sbjct: 6193 tttcctgcgcagcttaggtggaaggcgaag 6222
>gb|AC151668.38| Medicago truncatula clone mth2-6e22, complete sequence Length = 110949 Score = 202 bits (102), Expect = 7e-49 Identities = 164/185 (88%), Gaps = 4/185 (2%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||| ||| |||||| |||||| | ||||||| Sbjct: 6340 tttcctgcgcagcttaggtggaaggcaaag-aaggcctccttccgggggggctcgagcca 6398 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 ||||||||||||||||||||||||||| | |||||||||||||| ||| | | ||| Sbjct: 6399 tcagtgagataccactctggaagagctagaattctaaccttgtgccagtacaga---cca 6455 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6456 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 6515 Query: 185 cgtgc 189 ||||| Sbjct: 6516 cgtgc 6520
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 202 bits (102), Expect = 7e-49 Identities = 164/185 (88%), Gaps = 4/185 (2%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||| ||| |||||| |||||| | ||||||| Sbjct: 21585 tttcctgcgcagcttaggtggaaggcaaag-aaggcctccttccgggggggctcgagcca 21527 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggcca 124 ||||||||||||||||||||||||||| | |||||||||||||| ||| | | ||| Sbjct: 21526 tcagtgagataccactctggaagagctagaattctaaccttgtgccagtacaga---cca 21470 Query: 125 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21469 agggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggagg 21410 Query: 185 cgtgc 189 ||||| Sbjct: 21409 cgtgc 21405
>gb|AF393576.1| Anthoceros punctatus small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 8235 Score = 200 bits (101), Expect = 3e-48 Identities = 165/186 (88%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| ||||| | ||||||| Sbjct: 6018 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttctgggggggctcgagcca 6076 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||| |||||||||| |||||||| | ||||||||||||||||| ||| ||||| Sbjct: 6077 tcagtgaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggct 6136 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 6137 aagggacagtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggag 6196 Query: 184 gcgtgc 189 |||||| Sbjct: 6197 gcgtgc 6202
>dbj|AB087478.1| Anthoceros formosae chloroplast 23S rRNA, complete sequence Length = 2819 Score = 200 bits (101), Expect = 3e-48 Identities = 165/186 (88%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| ||||| | ||||||| Sbjct: 2128 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttctgggggggctcgagcca 2186 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||| |||||||||| |||||||| | ||||||||||||||||| ||| ||||| Sbjct: 2187 tcagtgaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggct 2246 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2247 aagggacagtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggag 2306 Query: 184 gcgtgc 189 |||||| Sbjct: 2307 gcgtgc 2312
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 200 bits (101), Expect = 3e-48 Identities = 165/186 (88%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| ||||| | ||||||| Sbjct: 149117 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttctgggggggctcgagcca 149059 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||| |||||||||| |||||||| | ||||||||||||||||| ||| ||||| Sbjct: 149058 tcagtgaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggct 148999 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 148998 aagggacagtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggag 148939 Query: 184 gcgtgc 189 |||||| Sbjct: 148938 gcgtgc 148933 Score = 200 bits (101), Expect = 3e-48 Identities = 165/186 (88%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| ||||| | ||||||| Sbjct: 119549 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttctgggggggctcgagcca 119607 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||| |||||||||| |||||||| | ||||||||||||||||| ||| ||||| Sbjct: 119608 tcagtgaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggct 119667 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 119668 aagggacagtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggag 119727 Query: 184 gcgtgc 189 |||||| Sbjct: 119728 gcgtgc 119733
>dbj|AB073981.1| Anthoceros formosae chloroplast gene for 23S ribosomal RNA, complete sequence Length = 3503 Score = 200 bits (101), Expect = 3e-48 Identities = 165/186 (88%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||||||| |||||| ||||| | ||||||| Sbjct: 2128 tttcctgcgcagcttaggtggaaggcgaag-aaggcctccttctgggggggctcgagcca 2186 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||| |||||||||| |||||||| | ||||||||||||||||| ||| ||||| Sbjct: 2187 tcagtgaaataccactctagaagagctagaattctaaccttgtgtcaagacttacgggct 2246 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2247 aagggacagtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggag 2306 Query: 184 gcgtgc 189 |||||| Sbjct: 2307 gcgtgc 2312
>gb|AF393587.1| Climacium dendroides large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3020 Score = 192 bits (97), Expect = 7e-46 Identities = 159/180 (88%), Gaps = 4/180 (2%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||||||| ||||||| ||||| | |||||||||||| Sbjct: 2133 tgcgcagcttaggtggaaggcgaag-aaggccctcttccgggagggctcgagccatcagt 2191 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaaggga 129 || |||||||||| |||||||| | ||||||||||||| ||| | ||||||||||| Sbjct: 2192 gaaataccactctagaagagctagaattctaaccttgtatcaatac---gggccaaggga 2248 Query: 130 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2249 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 2308
>emb|X55033.1|CHPSRRNAO P.sativum chloroplast DNA of the single ribosomal RNA operon Length = 7920 Score = 190 bits (96), Expect = 3e-45 Identities = 165/186 (88%), Gaps = 7/186 (3%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||| ||| ||||||||||||| | ||||||| Sbjct: 6626 tttcctgcgcagcttaggtggaaggcaaag-aaggcccccttccgggggggctcgagcca 6684 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||| || ||| | || Sbjct: 6685 tcagtgagataccactctggaagagctagaattctaaccttgtgccaagaca----gacc 6740 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 6741 aagggacagtctcaggtagacagtttctatggggcgtagg-ctcccaaaaggtaacggag 6799 Query: 184 gcgtgc 189 |||||| Sbjct: 6800 gcgtgc 6805
>gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S, 5S, 16S and 23S mRNA Length = 7920 Score = 190 bits (96), Expect = 3e-45 Identities = 165/186 (88%), Gaps = 7/186 (3%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||||||| ||| ||||||||||||| | ||||||| Sbjct: 6626 tttcctgcgcagcttaggtggaaggcaaag-aaggcccccttccgggggggctcgagcca 6684 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||||||||||||||||||||||| | |||||||||||||| || ||| | || Sbjct: 6685 tcagtgagataccactctggaagagctagaattctaaccttgtgccaagaca----gacc 6740 Query: 124 aagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggag 183 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 6741 aagggacagtctcaggtagacagtttctatggggcgtagg-ctcccaaaaggtaacggag 6799 Query: 184 gcgtgc 189 |||||| Sbjct: 6800 gcgtgc 6805
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 165 bits (83), Expect = 1e-37 Identities = 159/184 (86%), Gaps = 2/184 (1%) Strand = Plus / Minus Query: 7 tcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatc 66 ||||||||||||||||||| |||||||| |||||||| |||| ||||||||| Sbjct: 126317 tcctgcgcagcttaggtgggaggcgaag-aaggcccctttccgggggggttcgagccatc 126259 Query: 67 agtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaa 125 ||||| |||||||||| || | ||| | ||||||||| || |||| ||| |||||||| Sbjct: 126258 agtgaaataccactctagaggggctagaattctaaccctgcgtcaagactgacgggccaa 126199 Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126198 gggacagtttcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 126139 Query: 186 gtgc 189 |||| Sbjct: 126138 gtgc 126135 Score = 165 bits (83), Expect = 1e-37 Identities = 159/184 (86%), Gaps = 2/184 (1%) Strand = Plus / Plus Query: 7 tcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatc 66 ||||||||||||||||||| |||||||| |||||||| |||| ||||||||| Sbjct: 97130 tcctgcgcagcttaggtgggaggcgaag-aaggcccctttccgggggggttcgagccatc 97188 Query: 67 agtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaa 125 ||||| |||||||||| || | ||| | ||||||||| || |||| ||| |||||||| Sbjct: 97189 agtgaaataccactctagaggggctagaattctaaccctgcgtcaagactgacgggccaa 97248 Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97249 gggacagtttcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 97308 Query: 186 gtgc 189 |||| Sbjct: 97309 gtgc 97312
>dbj|AB197035.2| Selaginella uncinata chloroplast DNA, complete genome Length = 144170 Score = 163 bits (82), Expect = 6e-37 Identities = 160/186 (86%), Gaps = 3/186 (1%) Strand = Plus / Minus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||| ||||||||||||||||||||||||||||| |||| |||||||| | ||| Sbjct: 137140 ggcccttcctgcgcagcttaggtggaaggcgaag-aaggtccccttccgggggggctcga 137082 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 ||||||||||| |||||||||| | ||||| |||||||| ||| |||| | | ||| Sbjct: 137081 gccatcagtgaaataccactctaggagagccaaaattctaactttgcgtca--ctcacgg 137024 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 137023 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcctaaagggtaacg 136964 Query: 181 gaggcg 186 |||||| Sbjct: 136963 gaggcg 136958 Score = 163 bits (82), Expect = 6e-37 Identities = 160/186 (86%), Gaps = 3/186 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||| ||||||||||||||||||||||||||||| |||| |||||||| | ||| Sbjct: 84737 ggcccttcctgcgcagcttaggtggaaggcgaag-aaggtccccttccgggggggctcga 84795 Query: 61 gccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgg 120 ||||||||||| |||||||||| | ||||| |||||||| ||| |||| | | ||| Sbjct: 84796 gccatcagtgaaataccactctaggagagccaaaattctaactttgcgtca--ctcacgg 84853 Query: 121 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 84854 gccaagggacagtctcaggtagacagtttctatggggcgtaggcctcctaaagggtaacg 84913 Query: 181 gaggcg 186 |||||| Sbjct: 84914 gaggcg 84919
>emb|AJ007508.1|GGN7508 Gnetum gnemon chloroplast psaC, ccsA, 4.5S rRNA, 5S rRNA, 16S rRNA (partial), 23S rRNA, and tRNA (Leu, Asn, Arg, Ala and Ile) genes Length = 9493 Score = 159 bits (80), Expect = 9e-36 Identities = 121/132 (91%), Gaps = 2/132 (1%) Strand = Plus / Minus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg- 117 |||||||||||||||||||||||| |||| || | | |||||||||| |||||| || Sbjct: 4380 gagccatcagtgagataccactctagaagtgccagaactctaaccttgcgtcagaaccta 4321 Query: 118 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 177 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 4320 cgggccaagggacagtctcaggtagacagtttctatggggcgtagg-ctcccaaaaggta 4262 Query: 178 acggaggcgtgc 189 |||||||||||| Sbjct: 4261 acggaggcgtgc 4250
>emb|AJ001025.1|CLPACHLLN Picea abies chloroplast DNA for chlL, trnR, trnH, trnN, 23S rRNA, 4.5S rRNA and 5S rRNA genes Length = 4027 Score = 159 bits (80), Expect = 9e-36 Identities = 93/96 (96%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 95 attctaaccttgtgtcag-acccgcgggccaagggacagtctcaggtagacagtttctat 153 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct: 3 attctaaccttgtgtcaggacctacgggccaagggacagtctcaggtagacagtttctat 62 Query: 154 ggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||| Sbjct: 63 ggggcgtaggcctcccaaaaggtaacggaggcgtgc 98
>emb|X59768.1|CA23SRR C.americana 23S rRNA gene Length = 2902 Score = 155 bits (78), Expect = 1e-34 Identities = 123/134 (91%), Gaps = 3/134 (2%) Strand = Plus / Plus Query: 57 ccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acc 115 ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| Sbjct: 2172 ccgagccatcagtgagataccactctggaagagctataattctaaccttgtgttaggacc 2231 Query: 116 cgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaagg 175 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2232 aacgggcgc-gggacagtctcaggtagacagtttctatggggcgtagg-ctcccaaaagg 2289 Query: 176 taacggaggcgtgc 189 |||||||||||||| Sbjct: 2290 taacggaggcgtgc 2303 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcg 31 ||||||||||| ||||||||||||||||||| Sbjct: 2126 ggcctttcctgtgcagcttaggtggaaggcg 2156
>ref|NM_195959.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0075K12.8), mRNA Length = 858 Score = 153 bits (77), Expect = 6e-34 Identities = 77/77 (100%) Strand = Plus / Minus Query: 113 acccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaa 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 acccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaa 558 Query: 173 aggtaacggaggcgtgc 189 ||||||||||||||||| Sbjct: 557 aggtaacggaggcgtgc 541
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 151 bits (76), Expect = 2e-33 Identities = 116/128 (90%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 63 catcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg-cggg 121 ||||||||| |||||||||| |||||||| | ||||||||||||||||| | |||| Sbjct: 114031 catcagtgaaataccactctagaagagctagaattctaaccttgtgtcaaaatttacggg 113972 Query: 122 ccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgg 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113971 ccaagggacattctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgg 113912 Query: 182 aggcgtgc 189 ||| |||| Sbjct: 113911 aggtgtgc 113904 Score = 151 bits (76), Expect = 2e-33 Identities = 116/128 (90%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 63 catcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccg-cggg 121 ||||||||| |||||||||| |||||||| | ||||||||||||||||| | |||| Sbjct: 88089 catcagtgaaataccactctagaagagctagaattctaaccttgtgtcaaaatttacggg 88148 Query: 122 ccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgg 181 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88149 ccaagggacattctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgg 88208 Query: 182 aggcgtgc 189 ||| |||| Sbjct: 88209 aggtgtgc 88216 Score = 46.1 bits (23), Expect = 0.095 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccc 43 |||| ||||||||||||||||||||| ||| |||||||| Sbjct: 114085 tttcttgcgcagcttaggtggaaggcaaag-aaggcccc 114048 Score = 46.1 bits (23), Expect = 0.095 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccc 43 |||| ||||||||||||||||||||| ||| |||||||| Sbjct: 88035 tttcttgcgcagcttaggtggaaggcaaag-aaggcccc 88072
>emb|AJ318074.1|CSA318074 Cucumis sativus chloroplast ccsA gene, ndhD gene (partial), 4.5S rRNA gene, 23S rRNA gene (partial) and 5S rRNA gene Length = 6689 Score = 151 bits (76), Expect = 2e-33 Identities = 123/135 (91%), Gaps = 4/135 (2%) Strand = Plus / Plus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtca-gac 114 ||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| Sbjct: 2215 cccgagccatcagtgagataccactcttccagagctagaattctaaccttgtgtcaggac 2274 Query: 115 ccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 174 | |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| Sbjct: 2275 ctacgggccaagggacagtctcaggtaaacagtttc--tggggcgta-gcctcccaaaag 2331 Query: 175 gtaacggaggcgtgc 189 ||||||||||||||| Sbjct: 2332 gtaacggaggcgtgc 2346 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaag 34 |||||||||||||||||||||||||||||||||| Sbjct: 2160 ggcctttcctgcgcagcttaggtggaaggcgaag 2193
>gb|AF393606.1| Pellia neesiana large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2989 Score = 149 bits (75), Expect = 9e-33 Identities = 114/126 (90%), Gaps = 2/126 (1%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgc 118 ||||| ||||||| ||||||||||||||||||| | |||||||||| | |||| | || Sbjct: 2185 gagccgtcagtgaaataccactctggaagagctagaattctaacctcgcgtcattcacg- 2243 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2244 -ggccaaggaacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 2302 Query: 179 cggagg 184 |||||| Sbjct: 2303 cggagg 2308 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 2139 tgcgcagcttaggtggaaggc 2159
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 143 bits (72), Expect = 5e-31 Identities = 75/76 (98%) Strand = Plus / Minus Query: 114 cccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 173 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474825 cccgtgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 474766 Query: 174 ggtaacggaggcgtgc 189 |||||||||||||||| Sbjct: 474765 ggtaacggaggcgtgc 474750
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 143 bits (72), Expect = 5e-31 Identities = 75/76 (98%) Strand = Plus / Plus Query: 114 cccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 173 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469171 cccgtgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 469230 Query: 174 ggtaacggaggcgtgc 189 |||||||||||||||| Sbjct: 469231 ggtaacggaggcgtgc 469246
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 143 bits (72), Expect = 5e-31 Identities = 75/76 (98%) Strand = Plus / Minus Query: 114 cccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 173 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184343 cccgtgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 184284 Query: 174 ggtaacggaggcgtgc 189 |||||||||||||||| Sbjct: 184283 ggtaacggaggcgtgc 184268
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 143 bits (72), Expect = 5e-31 Identities = 75/76 (98%) Strand = Plus / Minus Query: 114 cccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 173 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500848 cccgtgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaa 500789 Query: 174 ggtaacggaggcgtgc 189 |||||||||||||||| Sbjct: 500788 ggtaacggaggcgtgc 500773
>gb|M36716.1|MZEMTCPAA Maize mitochondrion with chloroplast insert containing rRNAs Length = 1986 Score = 139 bits (70), Expect = 9e-30 Identities = 70/70 (100%) Strand = Plus / Plus Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 461 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 462 ggaggcgtgc 471
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 137 bits (69), Expect = 3e-29 Identities = 151/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||| ||| | ||| || |||| || ||||||||||| Sbjct: 146044 tgcgcagcttaggtggaaggcaaag-agggctcctttccggaggggcctgagccatcagt 146102 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtc-agacccgcgggccaaggg 128 ||||||||||||| ||||| || | |||||||||||||||| ||| ||| ||||| | Sbjct: 146103 gagataccactctagaagaactagaattctaaccttgtgtcaagaattacggaccaagag 146162 Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcg 186 |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 146163 acagtcccaggtagacagtttctatggggcgtaggcctcccaaagagtaacggaggcg 146220 Score = 137 bits (69), Expect = 3e-29 Identities = 151/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 10 tgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagccatcagt 69 ||||||||||||||||||||| ||| | ||| || |||| || ||||||||||| Sbjct: 86807 tgcgcagcttaggtggaaggcaaag-agggctcctttccggaggggcctgagccatcagt 86749 Query: 70 gagataccactctggaagagctcggattctaaccttgtgtc-agacccgcgggccaaggg 128 ||||||||||||| ||||| || | |||||||||||||||| ||| ||| ||||| | Sbjct: 86748 gagataccactctagaagaactagaattctaaccttgtgtcaagaattacggaccaagag 86689 Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcg 186 |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 86688 acagtcccaggtagacagtttctatggggcgtaggcctcccaaagagtaacggaggcg 86631
>gb|AF393577.1| Bazzania trilobata large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2945 Score = 135 bits (68), Expect = 1e-28 Identities = 117/132 (88%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-acccg 117 ||||||||||||| |||||||||| |||||||| | |||||||||| |||||| | Sbjct: 2136 gagccatcagtgaaataccactctagaagagctagaattctaacctcgtgtcaatattta 2195 Query: 118 cgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggta 177 |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2196 cgggccgaggaacagtcccaggtagacagtttctatggggcgtaggcctcccaaaaggta 2255 Query: 178 acggaggcgtgc 189 ||||||| |||| Sbjct: 2256 acggaggtgtgc 2267 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 2090 tgcgcagcttaggtggaaggc 2110
>dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete genome Length = 430597 Score = 135 bits (68), Expect = 1e-28 Identities = 123/141 (87%), Gaps = 2/141 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||| ||||||| |||||| |||||| |||||||| Sbjct: 425090 tttcctgcgcagcttaggtggagggcgaag-aaggcctccttccggggggggccgagcca 425148 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||||||||||||||| ||||||| | |||||||||||||| || |||| |||||| Sbjct: 425149 tcagtgagataccactctgaaagagctagaattctaaccttgtgccaggacctacgggcc 425208 Query: 124 aagggacagtctcaggtagac 144 ||||||||||||||||||||| Sbjct: 425209 aagggacagtctcaggtagac 425229 Score = 135 bits (68), Expect = 1e-28 Identities = 123/141 (87%), Gaps = 2/141 (1%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccgagcca 64 |||||||||||||||||||||| ||||||| |||||| |||||| |||||||| Sbjct: 74340 tttcctgcgcagcttaggtggagggcgaag-aaggcctccttccggggggggccgagcca 74398 Query: 65 tcagtgagataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggcc 123 ||||||||||||||||||| ||||||| | |||||||||||||| || |||| |||||| Sbjct: 74399 tcagtgagataccactctgaaagagctagaattctaaccttgtgccaggacctacgggcc 74458 Query: 124 aagggacagtctcaggtagac 144 ||||||||||||||||||||| Sbjct: 74459 aagggacagtctcaggtagac 74479
>gb|AF355767.1| Bruguiera gymnorrhiza 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2867 Score = 133 bits (67), Expect = 5e-28 Identities = 116/131 (88%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 60 agccatcagtgagataccactct-ggaagagctcggattctaaccttgtgtcagacccgc 118 ||||||| ||||| ||||||| | ||| ||||| | ||| |||||||||||||| | | Sbjct: 2188 agccatccgtgagttaccacttttggaggagctagaattttaaccttgtgtcaggactac 2247 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 2248 gggccaagggacattctcaggtagacagtttttatggggcgtaggcctcccaaaagttaa 2307 Query: 179 cggaggcgtgc 189 ||||||||||| Sbjct: 2308 cggaggcgtgc 2318
>gb|AF393586.1| Chara sp. CL-2002-2 small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 7651 Score = 129 bits (65), Expect = 8e-27 Identities = 115/131 (87%), Gaps = 3/131 (2%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgc 118 |||||||||||||||||||||||| || |||| | ||||||||||| |||| ||| Sbjct: 6190 gagccatcagtgagataccactcttgagaagctagaattctaaccttatgtcgtttccg- 6248 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 6249 --gctaagggaaagtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaa 6306 Query: 179 cggaggcgtgc 189 ||||||||||| Sbjct: 6307 cggaggcgtgc 6317 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggc 30 |||||||||||||||||||||||||| Sbjct: 6137 tttcctgcgcagcttaggtggaaggc 6162
>gb|AY305264.1| Cucumis melo clone M6-L12 orf124, orf118, tRNA-Met, and atp9 genes, complete sequence; and atp6 pseudogene, partial sequence; mitochondrial Length = 10403 Score = 123 bits (62), Expect = 5e-25 Identities = 118/134 (88%), Gaps = 2/134 (1%) Strand = Plus / Minus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-ac 114 ||||||||||||||||||||||||||| |||||| | ||||||| |||||||||| || Sbjct: 1787 cccgagccatcagtgagataccactcttctagagcttgaattctaatcttgtgtcaggac 1728 Query: 115 ccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcct-cccaaaa 173 | | |||||| |||||||||||||||||| |||| ||||||||||||||| ||||||| Sbjct: 1727 ctacaagccaagcgacagtctcaggtagacaatttccatggggcgtaggcctccccaaaa 1668 Query: 174 ggtaacggaggcgt 187 ||||| |||||||| Sbjct: 1667 ggtaatggaggcgt 1654
>gb|AF393603.1| Nitella sp. CL-2002 large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3349 Score = 121 bits (61), Expect = 2e-24 Identities = 114/131 (87%), Gaps = 3/131 (2%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgc 118 ||||||| |||||||||||||||| ||| |||| | || |||||||| ||||| ||| Sbjct: 2152 gagccattagtgagataccactcttgaatagctagaatcctaaccttatgtcatctccg- 2210 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 || |||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2211 --gctaaggaaaagtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaa 2268 Query: 179 cggaggcgtgc 189 ||||||||||| Sbjct: 2269 cggaggcgtgc 2279 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 2104 tgcgcagcttaggtggaaggc 2124
>gb|AF393584.1| Chara sp. CL-2002-1 large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3257 Score = 121 bits (61), Expect = 2e-24 Identities = 114/131 (87%), Gaps = 3/131 (2%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgc 118 |||||||||||||||||||||||| || |||| | ||||||||||| |||| ||| Sbjct: 2157 gagccatcagtgagataccactcttgagaagctagaattctaaccttatgtcgtttccg- 2215 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 || |||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2216 --gctaaggaaaagtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaa 2273 Query: 179 cggaggcgtgc 189 ||||||||||| Sbjct: 2274 cggaggcgtgc 2284 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggc 30 |||||||||||||||||||||||||| Sbjct: 2104 tttcctgcgcagcttaggtggaaggc 2129
>gb|AF393579.1| Chara corallina large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3277 Score = 121 bits (61), Expect = 2e-24 Identities = 114/131 (87%), Gaps = 3/131 (2%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacccgc 118 |||||||||||||||||||||||| || |||| | ||||||||||| |||| ||| Sbjct: 2157 gagccatcagtgagataccactcttgagaagctagaattctaaccttatgtcgtttccg- 2215 Query: 119 gggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaa 178 || |||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2216 --gctaaggaaaagtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaa 2273 Query: 179 cggaggcgtgc 189 ||||||||||| Sbjct: 2274 cggaggcgtgc 2284 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggc 30 |||||||||||||||||||||||||| Sbjct: 2104 tttcctgcgcagcttaggtggaaggc 2129
>gb|AF393610.1| Spirogyra maxima large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2674 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2132 gggacagtcccaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 2191 Query: 186 gtgc 189 |||| Sbjct: 2192 gtgc 2195 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 2018 tgcgcagcttaggtggaaggc 2038
>gb|AF393582.1| Chaetosphaeridium globosum SAG 26.98 large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2875 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2208 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaacggaggc 2267 Query: 186 gtgc 189 |||| Sbjct: 2268 gtgc 2271 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaag 34 |||||||||||||||| |||||||| Sbjct: 2096 tgcgcagcttaggtgggaggcgaag 2120
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Minus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 123057 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaacggaggc 122998 Query: 186 gtgc 189 |||| Sbjct: 122997 gtgc 122994 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 96809 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaacggaggc 96868 Query: 186 gtgc 189 |||| Sbjct: 96869 gtgc 96872 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 tgcgcagcttaggtggaaggcgaag 34 |||||||||||||||| |||||||| Sbjct: 123169 tgcgcagcttaggtgggaggcgaag 123145 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcgaag 34 |||||||||||||||| |||||||| Sbjct: 96697 tgcgcagcttaggtgggaggcgaag 96721
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2397 gggacagtcccaggtagacagtttctatggggcgtaggcctcccaaagggtaacggaggc 2456 Query: 186 gtgc 189 |||| Sbjct: 2457 gtgc 2460
>gb|L42844.1|CSKCPRGOL Cosmarium botrytis large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2669 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2270 gggacagtcccaggtagacagtttctatggggcgtaggcctcccaaagggtaacggaggc 2329 Query: 186 gtgc 189 |||| Sbjct: 2330 gtgc 2333
>gb|AF393590.1| Cosmarium botrytis large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2825 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2283 gggacagtcccaggtagacagtttctatggggcgtaggcctcccaaagggtaacggaggc 2342 Query: 186 gtgc 189 |||| Sbjct: 2343 gtgc 2346
>gb|AY330869.1| Cynomorium coccineum clone Cyno_0 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2754 Score = 109 bits (55), Expect = 8e-21 Identities = 61/63 (96%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcg 186 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct: 2223 ggacagtctcaggtagacagtttctatggggcgtaggcctcctaaaaagtaacggaggcg 2282 Query: 187 tgc 189 ||| Sbjct: 2283 tgc 2285 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaag 34 |||||||||||||||| |||| |||||||||||| Sbjct: 2110 ggcctttcctgcgcagtttagatggaaggcgaag 2143 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaa 86 ||||||| |||||||||||||||||||| Sbjct: 2163 gagccataagtgagataccactctggaa 2190
>gb|AY123764.1| Nicotiana tabacum chloroplast 16S ribosomal RNA-23S ribosomal RNA intergenic spacer region and 23S ribosomal RNA gene, partial sequences Length = 3735 Score = 107 bits (54), Expect = 3e-20 Identities = 78/87 (89%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaagtaaggcccccttccnnnnnnncccga 60 |||||||||||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct: 3639 ggcctttcctgcgcagcttaggtggaaggcgaag-aaggcctccttccgggggggcccga 3697 Query: 61 gccatcagtgagataccactctggaag 87 ||||||||||||||||||||||||||| Sbjct: 3698 gccatcagtgagataccactctggaag 3724
>gb|AF393594.1| Coleochaete scutata large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2886 Score = 105 bits (53), Expect = 1e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2201 acagtttcagatagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 2260 Query: 189 c 189 | Sbjct: 2261 c 2261
>gb|AF393593.1| Coleochaete orbicularis small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 6131 Score = 105 bits (53), Expect = 1e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5235 acagtttcagatagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 5294 Query: 189 c 189 | Sbjct: 5295 c 5295
>gb|AF393591.1| Coleochaete nitellarum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2888 Score = 105 bits (53), Expect = 1e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2201 acagtttcagatagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 2260 Query: 189 c 189 | Sbjct: 2261 c 2261
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 103 bits (52), Expect = 5e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 126 gggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 2561 gggacattcccaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggaggc 2620 Query: 186 gtgc 189 |||| Sbjct: 2621 gtgc 2624 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaag 34 |||||||| |||||||||||||||| |||||||| Sbjct: 2438 ggcctttcttgcgcagcttaggtgggaggcgaag 2471
>gb|AY330874.1| Cynomorium coccineum clone Cyno_5 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2737 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 131 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct: 2211 agtctcaggtagacagtttctatggggcgtaggcctcctaaaaagtaacggaggcgtgc 2269 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1 ggcctttcctgcgcagcttaggtggaaggcgaag 34 |||||||||||||||| |||| |||||||||||| Sbjct: 2103 ggcctttcctgcgcagtttagatggaaggcgaag 2136 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaa 86 ||||||| |||||||||||||||||||| Sbjct: 2156 gagccataagtgagataccactctggaa 2183
>gb|AF393601.1| Mesotaenium caldariorum large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast gene for chloroplast product Length = 2691 Score = 89.7 bits (45), Expect = 7e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 133 tctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 2156 tctcaggtagacagtttctatggggcgtaggcctcctaaagagtaacggaggcgtgc 2212
>gb|AY330887.1| Cynomorium coccineum clone Cyno_19 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2689 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330886.1| Cynomorium coccineum clone Cyno_18 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2689 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2157 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2215 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2105 agtgagataccactctggaa 2124
>gb|AY330884.1| Cynomorium coccineum clone Cyno_15 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330883.1| Cynomorium coccineum clone Cyno_14 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330882.1| Cynomorium coccineum clone Cyno_13 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330881.1| Cynomorium coccineum clone Cyno_12 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330880.1| Cynomorium coccineum clone Cyno_11 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330878.1| Cynomorium coccineum clone Cyno_9 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330877.1| Cynomorium coccineum clone Cyno_8 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330876.1| Cynomorium coccineum clone Cyno_7 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2689 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2157 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2215 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2105 agtgagataccactctggaa 2124
>gb|AY330875.1| Cynomorium coccineum clone Cyno_6 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330873.1| Cynomorium coccineum clone Cyno_4 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AY330872.1| Cynomorium coccineum clone Cyno_3 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216
>gb|AY330871.1| Cynomorium coccineum clone Cyno_2 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2689 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2157 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2215 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2105 agtgagataccactctggaa 2124
>gb|AY330870.1| Cynomorium coccineum clone Cyno_1 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2690 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 2158 ggacagtcttaggtagacagtttctatggggcgtaggcctcctaaaaagcaacggaggc 2216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agtgagataccactctggaa 86 |||||||||||||||||||| Sbjct: 2106 agtgagataccactctggaa 2125
>gb|AF393596.1| Entransia fimbriata large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2840 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| Sbjct: 2171 gacagtctcaggtagacagtttcactggggcagtggcctcccaaaaggtaatggaggcgt 2230 Query: 188 gc 189 || Sbjct: 2231 gc 2232
>emb|AM084275.1| Cyanoptyche gloeocystis cyanelle 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, strain SAG 34.90 Length = 4586 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaac 102 ||||||||||||||||||||||||||||||||| | |||||||| Sbjct: 3994 gagccatcagtgagataccactctggaagagctagaattctaac 4037
>emb|X69917.1|BCMIDDLYB B.corolliflora middly repeated DNA Length = 258 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 56 cccgagccatcagtgagataccactctggaagagct 91 |||||||||||||||||||||||||||||||||||| Sbjct: 38 cccgagccatcagtgagataccactctggaagagct 3 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 5 tttcctgcgcagcttaggtggaaggcgaag 34 |||||||||||||||||||||||||||||| Sbjct: 83 tttcctgcgcagcttaggtggaaggcgaag 54
>gb|AY330885.1| Cynomorium coccineum clone Cyno_16 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2716 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 127 ggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 |||||||||||||||||||||||||| ||||||| ||| ||| |||| ||||| ||||| Sbjct: 2185 ggacagtctcaggtagacagtttctacggggcgtgggcatcctaaaaagtaacagaggc 2243 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||| ||||||||||||||| |||| |||| Sbjct: 2125 gagccataagtgagataccactccggaaaagct 2157
>gb|AY330879.1| Cynomorium coccineum clone Cyno_10 23S large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2696 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 131 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggc 185 ||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| Sbjct: 2169 agtctcaggtagacagtttatatggggcgtaggcctcttaaaaagtaacagaggc 2223 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaa 86 ||||||| |||||||||||||||||||| Sbjct: 2105 gagccataagtgagataccactctggaa 2132
>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154442 Score = 69.9 bits (35), Expect = 7e-09 Identities = 42/43 (97%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 6 ttcctgcgcagcttaggtggaaggcgaagtaaggcccccttcc 48 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 133671 ttcctgcgcagcttaggtggaaggcgaag-aaggcccccttcc 133712
>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0015J03, complete sequence Length = 165933 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 156 ggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||| Sbjct: 33758 ggcgtaggcctcccaaaaggtaacggaggcgtgc 33725
>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0015J03, complete sequence Length = 135940 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 156 ggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||||||||||||||||||||||||||||||| Sbjct: 26243 ggcgtaggcctcccaaaaggtaacggaggcgtgc 26276
>gb|L42850.1|PMKCPRGOL Pleurastrum terrestre large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast gene for chloroplast product Length = 2786 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 ||||||||||||| | |||||||| ||||||| || ||||| ||||||||||||||| || Sbjct: 2392 gacagtctcaggtgggcagtttctttggggcgaagacctcctaaaaggtaacggaggtgt 2451 Query: 188 gc 189 || Sbjct: 2452 gc 2453 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||| ||||| | ||||||| Sbjct: 2324 gagccatcagtgagagaccactctggacgagctagaattctaa 2366
>gb|L42853.1|PYTCPRGOL Pyramimonas parkeae large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2665 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||||||||||||||||||||| Sbjct: 2200 gagccatcagtgagataccactctggaagagct 2232 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 ||||||||||||||||||||||||||| Sbjct: 2303 gcctcccaaaaggtaacggaggcgtgc 2329 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 2152 tgcgcagcttaggtggaaggc 2172
>gb|AF393608.1| Pyramimonas parkeae small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; and large subunit ribosomal RNA (rrl) gene, partial sequence; chloroplast genes for chloroplast products Length = 4577 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||||||||||||||||||||| Sbjct: 3969 gagccatcagtgagataccactctggaagagct 4001 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 ||||||||||||||||||||||||||| Sbjct: 4072 gcctcccaaaaggtaacggaggcgtgc 4098 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 3921 tgcgcagcttaggtggaaggc 3941
>emb|Z18289.1|PPC16SRNA Palmaria palmata Chloroplast for 16SrRNA gene Length = 4870 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttg 106 |||| ||||||||||||||||||||||| |||| | |||||||||||| Sbjct: 3882 gagctatcagtgagataccactctggaaaagctagaattctaaccttg 3929 Score = 44.1 bits (22), Expect = 0.38 Identities = 58/70 (82%) Strand = Plus / Plus Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||| ||||| |||||| | |||||| ||||||| |||||| |||| ||||| Sbjct: 3943 ggccaaggaacagtttcaggtgggcagtttgactggggcggtcgcctcctaaaaagtaac 4002 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 4003 ggaggcgtgc 4012
>emb|AM084274.1| Glaucocystis nostochinearum cyanelle 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, strain SAG 45.88 Length = 3065 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaac 102 |||||| |||||||||||||||||||||||||| | |||||||| Sbjct: 2642 gagccaacagtgagataccactctggaagagctagaattctaac 2685
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaac 102 ||||| ||||||||||||||||||||||||||| | |||||||| Sbjct: 113262 gagccgtcagtgagataccactctggaagagctagaattctaac 113219 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaac 102 ||||| ||||||||||||||||||||||||||| | |||||||| Sbjct: 4255 gagccgtcagtgagataccactctggaagagctagaattctaac 4298
>gb|AY484589.1| Musa acuminata clone MuH9, genomic sequence Length = 82723 Score = 61.9 bits (31), Expect = 2e-06 Identities = 107/131 (81%), Gaps = 1/131 (0%) Strand = Plus / Minus Query: 56 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcag-ac 114 |||||||| |||||||||||||||| || ||||||| ||||||| |||||| || || Sbjct: 51341 cccgagccttcagtgagataccactttgaaagagctataattctaatattgtgttaggac 51282 Query: 115 ccgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaag 174 ||||||||||| | |||| ||||||||||||||||| || ||| ||||| |||| Sbjct: 51281 ttatgggccaagggataatctcgagtagacagtttctatggagcatagacctcctgaaag 51222 Query: 175 gtaacggaggc 185 ||||| ||||| Sbjct: 51221 gtaacagaggc 51211
>gb|L44126.1|SFFCPRGOL Scherffelia dubia chloroplast large-subunit ribosomal RNA (rrnL) gene Length = 3334 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 2155 gagccatcagtgagagaccactctggaagagctagaattctaa 2197
>gb|L43538.1|CRECPRRNLA Chlamydomonas peterfii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3498 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 135 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||| | |||||| | ||||||| | ||||||||||||||||||||||||||| Sbjct: 2305 tcaggtgggcagtttatttggggcgaatgcctcccaaaaggtaacggaggcgtgc 2359 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 2230 gagccgtcattgagagaccactctggaagagct 2262
>gb|L43504.1|CRECPRRNLM Chlamydomonas starrii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3455 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 2405 gagccatcagtgagagaccactctggaagagctagaattctaa 2447 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | ||||| ||||||||||||||| || Sbjct: 2473 gacagtttcaggtgggcagtttatttggggcgaatacctcctaaaaggtaacggaggtgt 2532 Query: 188 gc 189 || Sbjct: 2533 gc 2534
>gb|L42852.1|PDFCPRGOL Pseudoscourfieldia marina large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast gene for chloroplast product Length = 2571 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 |||||| |||||||||||||||||||||||||| | ||||||| Sbjct: 2108 gagccaccagtgagataccactctggaagagctagaattctaa 2150 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 |||||| |||||||||||||||||||| Sbjct: 2209 gcctcctaaaaggtaacggaggcgtgc 2235 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcg 31 |||||||||||||||||||||| Sbjct: 2060 tgcgcagcttaggtggaaggcg 2081
>gb|L42846.1|GLZCPRGOL Gloeotilopsis sterilis large subunit ribosomal RNA gene, partial sequence; chloroplast Length = 2661 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 2196 gagccatcagtgagagaccactctggaagagctagaattctaa 2238 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 |||||| |||||||||||||||||||| Sbjct: 2299 gcctcctaaaaggtaacggaggcgtgc 2325
>gb|L42848.1|NEHCPRGOL Parietochloris pseudoalveolaris large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2834 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 2369 gagccatcagtgagagaccactctggaagagctagaattctaa 2411 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | ||||| |||||||||||||||||| Sbjct: 2437 gacagtttcaggtgggcagtttttctggggcggaaacctcctaaaaggtaacggaggcgt 2496 Query: 188 gc 189 || Sbjct: 2497 gc 2498
>gb|L42985.1|RTCCPRGOL Carteria crucifera large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2920 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 2458 gagccatcagtgagagaccactctggaagagctagaattctaa 2500
>gb|AF393609.1| Scherffelia dubia small subunit ribosomal RNA (rrs) gene, complete sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf167) gene, complete cds; chloroplast genes for chloroplast products Length = 5476 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 3895 gagccatcagtgagagaccactctggaagagctagaattctaa 3937
>emb|X68889.1|CHCSRRNL1 Chloroplast Chlamydomonas starrii rrnL gene, exon 1 Length = 2749 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaa 101 ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct: 2405 gagccatcagtgagagaccactctggaagagctagaattctaa 2447 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | ||||| ||||||||||||||| || Sbjct: 2473 gacagtttcaggtgggcagtttatttggggcgaatacctcctaaaaggtaacggaggtgt 2532 Query: 188 gc 189 || Sbjct: 2533 gc 2534
>emb|X68887.1|CHCPRRNL1 Chloroplast Chlamydomonas peterfii rrnL gene, exon 1 Length = 2668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 135 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||| | |||||| | ||||||| | ||||||||||||||||||||||||||| Sbjct: 2305 tcaggtgggcagtttatttggggcgaatgcctcccaaaaggtaacggaggcgtgc 2359 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 2230 gagccgtcattgagagaccactctggaagagct 2262
>gb|L43356.1|CRECPRRNLG Chlamydomonas zebra chloroplast large subunit ribosomal RNA (rrnL) gene Length = 4038 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| |||||||||||||||||| Sbjct: 2296 gacagtttcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgt 2355 Query: 188 gc 189 || Sbjct: 2356 gc 2357 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 2228 gagccatcattgagagaccactctggaagagct 2260
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| |||||||||||||||||| Sbjct: 150141 gacagtttcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgt 150082 Query: 188 gc 189 || Sbjct: 150081 gc 150080 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| |||||||||||||||||| Sbjct: 44062 gacagtttcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgt 44121 Query: 188 gc 189 || Sbjct: 44122 gc 44123 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 150209 gagccgtcattgagagaccactctggaagagct 150177 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 43994 gagccgtcattgagagaccactctggaagagct 44026
>emb|X68919.1|CHCZRRNL1 Chloroplast Chlamydomonas zebra rrnL gene, exon 1 Length = 2572 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| |||||||||||||||||| Sbjct: 2296 gacagtttcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgt 2355 Query: 188 gc 189 || Sbjct: 2356 gc 2357 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 2228 gagccatcattgagagaccactctggaagagct 2260
>emb|X16686.1|CHCR7S3S C. reinhardtii plastid DNA for 7S, 3S and 23S rRNA Length = 2603 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| |||||||||||||||||| Sbjct: 2234 gacagtttcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgt 2293 Query: 188 gc 189 || Sbjct: 2294 gc 2295 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 2166 gagccgtcattgagagaccactctggaagagct 2198
>emb|X01977.1|CHCRN23S Chlamydomonas reinhardtii chloroplast 23S rRNA gene intron Length = 1623 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| |||||||||||||||||| Sbjct: 21 gacagtttcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgt 80 Query: 188 gc 189 || Sbjct: 81 gc 82
>emb|Z15151.1|CHCGRRNL Chloroplast Chlamydomonas gelatinosa rrnL gene Length = 2904 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| |||||||||||||||||| Sbjct: 2245 gacagtttcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgt 2304 Query: 188 gc 189 || Sbjct: 2305 gc 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 2177 gagccgtcattgagagaccactctggaagagct 2209
>gb|L49157.1|STXCPRGOL Stigeoclonium helveticum chloroplast large-subunit ribosomal RNA (rrnL) gene Length = 6393 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 4801 gagccatcagtgagagaccactctggaagagct 4833
>gb|L43502.1|CRECPRRNLK Chlamydomonas komma chloroplast large subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CkoI genes Length = 5105 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 4377 gagccatcagtgagagaccactctggaagagct 4409
>gb|L43354.1|CRECPRRNLE Chlamydomonas iyengarii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3923 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 2239 gagccatcagtgagagaccactctggaagagct 2271 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | ||||| ||||||||||||||| || Sbjct: 2307 gacagtttcaggtgggcagtttatttggggcgaatacctcctaaaaggtaacggaggtgt 2366 Query: 188 gc 189 || Sbjct: 2367 gc 2368
>gb|L44123.1|CMJCPRGOL Chlorococcum echinozygotum chloroplast large-subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CecI gene Length = 7283 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 4498 gagccatcagtgagagaccactctggaagagct 4530
>gb|L42862.1|PNFCPRGOL Pycnococcus sp. CCMP 1203 large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2664 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 |||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||| Sbjct: 2268 acagtctcaggtaggcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgtg 2327 Query: 189 c 189 | Sbjct: 2328 c 2328 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactct 82 ||||| |||||||||||||||||| Sbjct: 2200 gagccgtcagtgagataccactct 2223
>gb|L49152.1|MEWCPRGOL Mesostigma viride large-subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2571 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 |||||| |||||||||||||||||||||||||| Sbjct: 2135 gagccaacagtgagataccactctggaagagct 2167 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 |||||| |||||||||||||||||||| Sbjct: 2237 gcctcctaaaaggtaacggaggcgtgc 2263 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcg 31 |||||||||||||||||||||| Sbjct: 2087 tgcgcagcttaggtggaaggcg 2108
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 59 gagccatcagtgagataccactctggaagagct 91 |||||| |||||||||||||||||||||||||| Sbjct: 113528 gagccaacagtgagataccactctggaagagct 113496 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 |||||| |||||||||||||||||||||||||| Sbjct: 88460 gagccaacagtgagataccactctggaagagct 88492 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Minus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 |||||| |||||||||||||||||||| Sbjct: 113426 gcctcctaaaaggtaacggaggcgtgc 113400 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 |||||| |||||||||||||||||||| Sbjct: 88562 gcctcctaaaaggtaacggaggcgtgc 88588 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 tgcgcagcttaggtggaaggcg 31 |||||||||||||||||||||| Sbjct: 113576 tgcgcagcttaggtggaaggcg 113555 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcg 31 |||||||||||||||||||||| Sbjct: 88412 tgcgcagcttaggtggaaggcg 88433
>emb|X68897.1|CHCIRRNX5 Chloroplast Chlamydomonas indica rrnL gene, exon 5 Length = 675 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 235 gagccatcagtgagagaccactctggaagagct 267
>emb|X68885.1|CHCIRRNL1 Chloroplast Chlamydomonas iyengarii rrnL gene, exon 1 Length = 2676 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 2239 gagccatcagtgagagaccactctggaagagct 2271 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | ||||| ||||||||||||||| || Sbjct: 2307 gacagtttcaggtgggcagtttatttggggcgaatacctcctaaaaggtaacggaggtgt 2366 Query: 188 gc 189 || Sbjct: 2367 gc 2368
>emb|X68916.1|CHCMRRNX4 Chloroplast C.moewusii rrnL gene, exon 4 Length = 689 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 396 gagccatcagtgagagaccactctggaagagct 428
>emb|X68929.1|CHCKRRNL3 Chloroplast Chlamydomonas komma rrnL gene, exon 3 Length = 955 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 227 gagccatcagtgagagaccactctggaagagct 259
>emb|Z17234.1|CHCERRNL Chloroplast Chlamydomonas eugametos rrnL gene Length = 8146 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 6122 gagccatcagtgagagaccactctggaagagct 6154
>emb|Z15152.1|CHCPRRNL Chloroplast Chlamydomonas pitschmannii rrnL gene Length = 3017 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||||||||||| Sbjct: 2289 gagccatcagtgagagaccactctggaagagct 2321 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| ||| ||||||||||||| Sbjct: 2357 gacagtttcaggtgggcagtttatctggggcggatgcctcctaaagcgtaacggaggcgt 2416 Query: 188 gc 189 || Sbjct: 2417 gc 2418
>gb|L49148.1|CRECPRGOLF Chlamydomonas mexicana chloroplast large subunit ribosomal RNA (rrnL) gene Length = 4181 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 135 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||| | |||||| | ||||||| | |||||| |||||||||||||||||||| Sbjct: 3034 tcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgtgc 3088 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 2959 gagccgtcattgagagaccactctggaagagct 2991
>gb|AF036708.1|AF036708 Mycoplasma gallisepticum strain A5969var.B ribosomal proteins S10 (rps10), L3 (rpl3), L4 (rpl4), L23 (rpl23), L2 (rpl2), S19 (rps19), L22 (rpl22), S3 (rps3), L16 (rpl16), L29 (rpl29), S17 (rps17), L14 (rpl14), L24 (rpl24), L5 (rpl5), S14 (rps14), S8 (rps8), L6 (rpl6), L18 (rpl18), S5 (rps5), L15 (rpl15), secretion protein Y (secY), adenylate kinase (adk), methionine aminopeptidase (map), and lactate dehydrogenase (ldh) genes, complete cds; and rrn235 operon consisting of 23S (rrl) and 5S (rrf) ribosomal RNA genes, complete sequence Length = 20115 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 ||||||||||||||||||||||||||| Sbjct: 18324 gcctcccaaaaggtaacggaggcgtgc 18350
>gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome Length = 996422 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 ||||||||||||||||||||||||||| Sbjct: 324490 gcctcccaaaaggtaacggaggcgtgc 324516 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 ||||||||||||||||||||||||||| Sbjct: 82783 gcctcccaaaaggtaacggaggcgtgc 82809
>emb|X68911.1|CHCMRRNL2 Chloroplast Chlamydomonas mexicana rrnL gene, exon 2 Length = 664 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 135 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||||| | |||||| | ||||||| | |||||| |||||||||||||||||||| Sbjct: 302 tcaggtgggcagtttatttggggcgaatgcctcctaaaaggtaacggaggcgtgc 356 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||| ||| ||||| ||||||||||||||||| Sbjct: 227 gagccgtcattgagagaccactctggaagagct 259
>gb|L08897.1|MYCRRSA Mycoplasma gallisepticum (strain A5969) 16S-, 23S-, 5S ribosomal RNA (rrsA, rrlA, rrfA) genes Length = 6663 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 ||||||||||||||||||||||||||| Sbjct: 5061 gcctcccaaaaggtaacggaggcgtgc 5087
>emb|CR931728.1| Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE Length = 115300 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 137 aggtagacagtttctatggggcgtaggcct 166 |||||||||||||||||||||| ||||||| Sbjct: 59375 aggtagacagtttctatggggcataggcct 59404
>gb|AC074111.2| Arabidopsis thaliana chromosome 1 BAC T18N24 genomic sequence, complete sequence Length = 98536 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggc 30 |||||||||||||||||||||||||| Sbjct: 95806 tttcctgcgcagcttaggtggaaggc 95831
>gb|L42990.1|CRECPRGOLD Chlamydomonas nivalis chloroplast large-subunit ribosomal RNA (rrnL) gene Length = 3403 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaaga 88 ||||||||||||||| |||||||||||||| Sbjct: 2399 gagccatcagtgagagaccactctggaaga 2428
>gb|L44124.1|MNXCPRGOL Monomastix sp. (M722) chloroplast large-subunit ribosomal RNA (rrnL) gene Length = 5001 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgg 181 |||||||||||| | |||||||| ||||||| || ||||| |||||||||||| Sbjct: 3854 gacagtctcaggcgggcagtttctctggggcggagtcctcctaaaaggtaacgg 3907 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctgga 85 |||||| |||||||||||||||||||| Sbjct: 3788 gagccaccagtgagataccactctgga 3814 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 3740 tgcgcagcttaggtggaaggc 3760
>gb|L49154.1|MNXCPRGOLA Monomastix sp. OKE-1 large subunit ribosomal RNA gene, partial sequence; and putative protein genes, complete cds; chloroplast Length = 6151 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacgg 181 |||||||||||| | |||||||| ||||||| || ||||| |||||||||||| Sbjct: 3811 gacagtctcaggcgggcagtttctctggggcggagtcctcctaaaaggtaacgg 3864 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctgga 85 |||||| |||||||||||||||||||| Sbjct: 3745 gagccaccagtgagataccactctgga 3771 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggc 30 ||||||||||||||||||||| Sbjct: 3697 tgcgcagcttaggtggaaggc 3717
>gb|L42860.1|CGZCPRGOL Chlorogonium elongatum chloroplast large-subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CelI gene Length = 3779 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| ||||||||||||||| || Sbjct: 3385 gacagtttcaggtgggcagtttatctggggcggatgcctcctaaaaggtaacggaggtgt 3444 Query: 188 gc 189 || Sbjct: 3445 gc 3446 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 3317 gagccatcattgagagaccactctggaagagct 3349
>gb|L42991.1|CRECPRGOLE Chlamydomonas radiata chloroplast large subunit ribosomal RNA (rrnL) gene Length = 2792 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaaga 88 ||||||||||||||| |||||||||||||| Sbjct: 2330 gagccatcagtgagagaccactctggaaga 2359
>gb|L42861.1|KLBCPRGOL Klebsormidium flaccidum large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2604 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 136 caggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||| ||||||||||| |||||| |||||||||||| |||| |||||||||| Sbjct: 2215 caggcagacagtttctctggggcagaggcctcccaaagagtaatggaggcgtgc 2268
>gb|AF393599.1| Klebsormidium subtilissimum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 2901 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 136 caggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||| ||||||||||| |||||| |||||||||||| |||| |||||||||| Sbjct: 2230 caggcagacagtttctctggggcagaggcctcccaaagagtaatggaggcgtgc 2283
>gb|AF393598.1| Klebsormidium flaccidum small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) gene, complete sequence; and 5S ribosomal RNA (rrf) gene, partial sequence; chloroplast genes for chloroplast products Length = 7627 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 136 caggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 189 |||| ||||||||||| |||||| |||||||||||| |||| |||||||||| Sbjct: 6803 caggcagacagtttctctggggcagaggcctcccaaagagtaatggaggcgtgc 6856
>gb|AC007505.4|AC007505 Arabidopsis thaliana chromosome I BAC F28L22 genomic sequence, complete sequence Length = 134499 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 5 tttcctgcgcagcttaggtggaaggc 30 |||||||||||||||||||||||||| Sbjct: 21671 tttcctgcgcagcttaggtggaaggc 21696
>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome Length = 191952 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||| ||||| |||||||| |||||| ||||||| |||||| |||| ||||| Sbjct: 191110 ggccaaggaacagtttcaggtaggcagtttgactggggcggtcgcctcctaaaaagtaac 191169 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 191170 ggaggcgtgc 191179 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||| ||||| |||||||| |||||| ||||||| |||||| |||| ||||| Sbjct: 152537 ggccaaggaacagtttcaggtaggcagtttgactggggcggtcgcctcctaaaaagtaac 152596 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 152597 ggaggcgtgc 152606 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 67 agtgagataccactctggaagagctcggattctaaccttg 106 |||||||||||||||||||| |||| |||||||||||| Sbjct: 191057 agtgagataccactctggaaaagctaaaattctaaccttg 191096 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 67 agtgagataccactctggaagagctcggattctaaccttg 106 |||||||||||||||||||| |||| |||||||||||| Sbjct: 152484 agtgagataccactctggaaaagctaaaattctaaccttg 152523
>gb|AY762091.1| Pasteuria ramosa 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 3184 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgt 187 ||||||||||||||||||||||||| Sbjct: 2851 gcctcccaaaaggtaacggaggcgt 2875
>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3 Length = 315079 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 163 gcctcccaaaaggtaacggaggcgt 187 ||||||||||||||||||||||||| Sbjct: 162224 gcctcccaaaaggtaacggaggcgt 162200
>gb|AY741371.1| Emiliania huxleyi strain CCMP 373 chloroplast, complete genome Length = 105309 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 |||||||||||| | |||||| ||||||| |||||| ||||||||||||||||||| Sbjct: 16851 acagtctcaggtggtcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgtg 16792 Query: 189 c 189 | Sbjct: 16791 c 16791 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 129 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 188 |||||||||||| | |||||| ||||||| |||||| ||||||||||||||||||| Sbjct: 4015 acagtctcaggtggtcagtttgactggggcggtcgcctcctaaaaggtaacggaggcgtg 4074 Query: 189 c 189 | Sbjct: 4075 c 4075
>gb|AY008341.1| Trichosarcina mucosa large subunit ribosomal RNA (rrnL) gene, partial sequence; and rrnL and putative site-specific DNA endonuclease (rrnL) genes, complete cds; chloroplast genes for chloroplast products Length = 4502 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||||||||| ||||||||| ||||||| Sbjct: 2194 gagccatcagtgagagaccactctgaaagagct 2226
>gb|L42986.1|RTCCPRGOLA Carteria lunzensis Length = 4448 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 3198 gagccatcattgagagaccactctggaagagct 3230
>gb|L42984.1|ANKCPRGOL Ankistrodesmus stipitatus chloroplast large-subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-AstI gene Length = 4859 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 144 cagtttctatggggcgtaggcctcccaaaaggtaacggagg 184 |||||||| ||||||| || ||||| ||||||||||||||| Sbjct: 3356 cagtttctctggggcggagacctcctaaaaggtaacggagg 3396 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctgg 84 ||||||||||||||| |||||||||| Sbjct: 3272 gagccatcagtgagagaccactctgg 3297
>gb|L49149.1|CRECPRGOLG Chlamydomonas monadina chloroplast large subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CmoI genes Length = 8176 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 3947 gagccatcattgagagaccactctggaagagct 3979
>gb|L43540.1|DUNCPRRNL Dunaliella parva Length = 5685 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 2999 gagccatcattgagagaccactctggaagagct 3031
>gb|L43353.1|CRECPRRNLD Chlamydomonas geitleri chloroplast large subunit ribosomal RNA (rrnL) gene Length = 4406 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 3676 gagccatcattgagagaccactctggaagagct 3708 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| ||| ||||||||||||| Sbjct: 3744 gacagtttcaggtgggcagtttatctggggcggatgcctcctaaagcgtaacggaggcgt 3803 Query: 188 gc 189 || Sbjct: 3804 gc 3805
>gb|L43352.1|CRECPRRNLC Chlamydomonas frankii chloroplast large subunit ribosomal RNA (rrnL) gene Length = 6750 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 4512 gagccatcattgagagaccactctggaagagct 4544
>gb|L43539.1|CRECPRRNL Chlamydomonas sp. (SAG 66.72) chloroplast large subunit ribosomal RNA (rrnL) gene Length = 5575 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 3032 gagccatcattgagagaccactctggaagagct 3064
>gb|L42854.1|SFCCPRGOL Scourfieldia sp. M561 large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2568 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 |||||| |||||||||||||||||||| ||||| Sbjct: 2103 gagccaacagtgagataccactctggaggagct 2135 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 tgcgcagcttaggtggaaggcg 31 |||||||||||||||||||||| Sbjct: 2055 tgcgcagcttaggtggaaggcg 2076 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcg 186 |||||| ||||||||||||||||| Sbjct: 2206 gcctcctaaaaggtaacggaggcg 2229
>gb|L43355.1|CRECPRRNLF Chlamydomonas pseudopertusa chloroplast large subunit ribosomal RNA (rrnL) gene Length = 3397 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 2451 gagccatcattgagagaccactctggaagagct 2483 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| ||| ||||||||||||| Sbjct: 2519 gacagtttcaggtgggcagtttatctggggcggatgcctcctaaagcgtaacggaggcgt 2578 Query: 188 gc 189 || Sbjct: 2579 gc 2580
>gb|L42858.1|CRECPRGOLA Chlamydomonas gigantea large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2888 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 2426 gagccatcattgagagaccactctggaagagct 2458
>gb|L42849.1|PEDCPRGOL Pedinomonas minor large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product Length = 2632 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaag 87 ||||||||||||||| ||||||||||||| Sbjct: 2170 gagccatcagtgagagaccactctggaag 2198 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 |||||| |||||||||||||||||||| Sbjct: 2273 gcctcctaaaaggtaacggaggcgtgc 2299
>gb|L42987.1|RTCCPRGOLB Carteria radiosa large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product Length = 2864 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 2404 gagccatcattgagagaccactctggaagagct 2436
>gb|AF393605.1| Pedinomonas minor small subunit ribosomal RNA (rrs) gene, complete sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; and large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; chloroplast genes for chloroplast products Length = 5057 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaag 87 ||||||||||||||| ||||||||||||| Sbjct: 4053 gagccatcagtgagagaccactctggaag 4081 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 163 gcctcccaaaaggtaacggaggcgtgc 189 |||||| |||||||||||||||||||| Sbjct: 4156 gcctcctaaaaggtaacggaggcgtgc 4182
>emb|X68892.1|CHCGRRNL2 Chloroplast Chlamydomonas geitleri rrnL gene, exon 2 Length = 957 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 227 gagccatcattgagagaccactctggaagagct 259 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Plus Query: 128 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 187 |||||| |||||| | |||||| | ||||||| | |||||| ||| ||||||||||||| Sbjct: 295 gacagtttcaggtgggcagtttatctggggcggatgcctcctaaagcgtaacggaggcgt 354 Query: 188 gc 189 || Sbjct: 355 gc 356
>emb|X68924.1|CHCSRRNX2 Chloroplast Chlamydomonas sp. 66.72 rrnL gene, exon 2 Length = 1291 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 1185 gagccatcattgagagaccactctggaagagct 1217
>emb|X68907.1|CHCFRRNL3 Chloroplast Chlamydomonas frankii rrnL gene, exon 3 Length = 332 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagct 91 ||||||||| ||||| ||||||||||||||||| Sbjct: 226 gagccatcattgagagaccactctggaagagct 258
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 59 gagccatcagtgagataccactctggaagagctcggattctaaccttgt 107 |||||| | ||||||||||||||| ||| |||| | ||||||||||||| Sbjct: 190125 gagccaacggtgagataccactctagaaaagctagaattctaaccttgt 190173 Score = 46.1 bits (23), Expect = 0.095 Identities = 35/39 (89%) Strand = Plus / Plus Query: 68 gtgagataccactctggaagagctcggattctaaccttg 106 ||||||||||||||| ||| |||| | |||||||||||| Sbjct: 151691 gtgagataccactctagaaaagctagaattctaaccttg 151729 Score = 44.1 bits (22), Expect = 0.38 Identities = 58/70 (82%) Strand = Plus / Plus Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||| ||||| ||||||| |||||| ||||||| |||||| |||| ||||| Sbjct: 190186 ggccaaggaacagttccaggtaggcagtttgactggggcggtcgcctcctaaaaagtaac 190245 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 190246 ggaggcgtgc 190255 Score = 44.1 bits (22), Expect = 0.38 Identities = 58/70 (82%) Strand = Plus / Plus Query: 120 ggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaac 179 |||||||| ||||| ||||||| |||||| ||||||| |||||| |||| ||||| Sbjct: 151743 ggccaaggaacagttccaggtaggcagtttgactggggcggtcgcctcctaaaaagtaac 151802 Query: 180 ggaggcgtgc 189 |||||||||| Sbjct: 151803 ggaggcgtgc 151812 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,552,921 Number of Sequences: 3902068 Number of extensions: 3552921 Number of successful extensions: 49027 Number of sequences better than 10.0: 586 Number of HSP's better than 10.0 without gapping: 594 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 47029 Number of HSP's gapped (non-prelim): 1770 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
