ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3p18 |
|---|---|
| Clone Library Name | barley_pub |
>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium| response protein 1) Length = 427 Score = 63.2 bits (152), Expect = 5e-10 Identities = 42/148 (28%), Positives = 73/148 (49%) Frame = +1 Query: 100 EVSAIYLAMQHSKLECIDEQSQDSISTDECADPDEAEELDEFDPYSFIKDLPELSMVVPK 279 +VS+ +L +Q L + SQ S ++++ D D DE + Y + L + P Sbjct: 189 QVSSDHL-IQDMNLSRVSSSSQASETSNDADDED-----DEDEEYIDLTLLQQGQYHAPG 242 Query: 280 FRPVLLPKQTRSCPRXXXXXXXXXXXXHSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYL 459 + +L P+ + + HS+ + +DF V + + H +YV RP + Sbjct: 243 YNTLLPPQDESTKGKKCLILDLDETLVHSSFKYLRSADFVLSVEIDDQVHNVYVIKRPGV 302 Query: 460 KDFLERVASMFEIIIFTASQSIYAEQLL 543 ++FLERV +FE+++FTAS S Y + LL Sbjct: 303 EEFLERVGKLFEVVVFTASVSRYGDPLL 330
>CTDS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Length = 261 Score = 57.8 bits (138), Expect = 2e-08 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Frame = +1 Query: 187 CADPDEAEELDEFDPYSFIKDLPELSMVVPKFRPV--LLPK-QTRSCPRXXXXXXXXXXX 357 C D+ E L +S L E + +PK PV LLP+ + + + Sbjct: 45 CVCRDDGEPLPA---HSGAPLLVEENGAIPKHTPVQYLLPEAKAQDSDKICVVIDLDETL 101 Query: 358 XHSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 HS+ +P ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ Sbjct: 102 VHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYAD 160
>CTDS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) Length = 261 Score = 57.0 bits (136), Expect = 4e-08 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Frame = +1 Query: 187 CADPDEAEELDEFDPYSFIKDLPELSMVVPKFRPV--LLPK-QTRSCPRXXXXXXXXXXX 357 C D+ E L +S L E + +PK PV LLP+ + + + Sbjct: 45 CVCRDDGEALPA---HSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETL 101 Query: 358 XHSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 HS+ +P ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ Sbjct: 102 VHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYAD 160
>CTDS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) Length = 270 Score = 56.6 bits (135), Expect = 5e-08 Identities = 24/58 (41%), Positives = 37/58 (63%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 HS+ +P ++DF PV H +YV RPY+ +FL R+ +FE ++FTAS + YA+ Sbjct: 113 HSSFKPINNADFIVPVEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYAD 170
>CTDS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) (Small CTD phosphatase 2) (SCP2) (Nuclear LIM interactor-interacting factor 2) (NLI-interacting factor 2) (Protein OS-4) Length = 271 Score = 56.2 bits (134), Expect = 6e-08 Identities = 23/58 (39%), Positives = 37/58 (63%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 HS+ +P ++DF P+ H +YV RPY+ +FL R+ +FE ++FTAS + YA+ Sbjct: 114 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYAD 171
>CTDSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) Length = 275 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/58 (39%), Positives = 39/58 (67%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 HS+ +P ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ Sbjct: 118 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYAD 175
>CTDSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) Length = 276 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/58 (39%), Positives = 39/58 (67%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 HS+ +P ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ Sbjct: 119 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYAD 176
>CTDSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protei Length = 276 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/58 (39%), Positives = 39/58 (67%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 HS+ +P ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ Sbjct: 119 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYAD 176
>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane| sodium response protein 2) Length = 397 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/61 (40%), Positives = 39/61 (63%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQL 540 HS+ + +DF PV + + H +YV RP + +FL RV+ ++E+++FTAS S YA L Sbjct: 240 HSSFKYMHSADFVLPVEIDDQVHNVYVIKRPGVDEFLNRVSQLYEVVVFTASVSRYANPL 299 Query: 541 L 543 L Sbjct: 300 L 300
>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I| Length = 325 Score = 47.8 bits (112), Expect = 2e-05 Identities = 22/61 (36%), Positives = 38/61 (62%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQL 540 HS+ + E +DF + + H + V RP + +FL+++ MFEI++FTAS + YA+ + Sbjct: 170 HSSFKYIEPADFVVSIEIDGLQHDVRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPV 229 Query: 541 L 543 L Sbjct: 230 L 230
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLR--DHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 H+T + C+ F L + ++ R RP+ KDFLE++A ++E+ +FT +YA Sbjct: 195 HTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAH 254 Query: 535 QL 540 + Sbjct: 255 TI 256
>CTDP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 960 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = +1 Query: 361 HSTLEPCEDSDFTFPVRFNLR--DHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAE 534 H+T + C F L + ++ R RP+ KDFLE++A ++E+ +FT +YA Sbjct: 195 HTTEQHCPQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAH 254 Query: 535 QL 540 + Sbjct: 255 TI 256
>FCP1_YEAST (Q03254) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase FCP1) Length = 732 Score = 35.8 bits (81), Expect = 0.085 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = +1 Query: 436 YVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQL 540 YV+ RP LK+F +VA +FE+ I+T + YA Q+ Sbjct: 246 YVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQI 280
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 34.7 bits (78), Expect = 0.19 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Frame = +1 Query: 406 VRFNLRD-HTIY-VRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLL 543 V+F L T+Y + RPY FL +V+ +++IIFTAS YA+ ++ Sbjct: 283 VKFGLSGIRTLYFIHKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVI 330
>FCP1_SCHPO (Q9P376) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase fcp1) Length = 723 Score = 32.7 bits (73), Expect = 0.72 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = +1 Query: 436 YVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQL 540 Y++ RP L FL++++ ++E+ I+T YA+++ Sbjct: 219 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEV 253
>OSTK_BOVIN (P31098) Osteopontin-K precursor| Length = 277 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Frame = +1 Query: 28 PVQSTCGNTKRANDEYSELGSL----SPEVSAIYLAMQHS-KLECIDEQSQDSISTDECA 192 P S K+ N++Y + + P +LA Q+S E D+ Q+++ + Sbjct: 21 PTSSGSSEEKQLNNKYPDAVATWLKPDPSQKQTFLAPQNSVSSEETDDNKQNTLPSKSNE 80 Query: 193 DPDEAEELDEFDPYS 237 DP++ ++LD+ D S Sbjct: 81 DPEQTDDLDDDDDNS 95
>FCP1_ENCCU (Q8SV03) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase FCP1) Length = 411 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +1 Query: 439 VRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLL 543 V+ RP L L R++ ++EI ++T YAE+++ Sbjct: 96 VKLRPNLDYMLRRISKLYEIHVYTMGTRAYAERIV 130
>PHC2_XENLA (Q4V7W5) Polyhomeotic-like protein 2| Length = 344 Score = 29.6 bits (65), Expect = 6.1 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Frame = +1 Query: 19 SKVPVQSTCGNTKRANDEYSELGSLSP--EVSAIYLAMQHSKLECIDEQSQDSISTDECA 192 S + + ++ ++ R +D S LSP S++ A Q +E + S+D I+ + Sbjct: 213 SALKLSNSQEDSSRCSDNSSYEEPLSPMSASSSLSRARQEHNVEPPNLHSRDPIAMSQDF 272 Query: 193 DPDEAEELDEFDPYSFIKDLPELSMVVPKFR 285 P + + + D Y F++ LP + +FR Sbjct: 273 LPSDPTKWNVEDVYDFVRSLPGCQEISEEFR 303
>OSTP_BOVIN (P31096) Osteopontin precursor (Bone sialoprotein-1) (Secreted| phosphoprotein 1) (SPP-1) Length = 278 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +1 Query: 160 SQDSISTDECADPDEAEELDEFDPYSFIKDLPELSMVVP 276 S D+ +TD+ DE+ DE D F D+P +++ P Sbjct: 103 SDDAETTDDPDHSDESHHSDESDEVDFPTDIPTIAVFTP 141
>TIM50_EMENI (Q5B4P0) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 532 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +1 Query: 421 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLL 543 R+H V RP + FL + +E+++FT+ S+ A+Q+L Sbjct: 269 REHGWRVAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVL 309
>SIR2_CANGA (Q6FWI7) NAD-dependent histone deacetylase SIR2 (EC 3.5.1.-)| (Regulatory protein SIR2) (Silent information regulator 2) Length = 509 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +1 Query: 142 ECIDEQSQDSISTDECADPDEAEELDEFDPYSFIKDLPELSMV 270 E D+ + D ++T+E P EE+DE + + + +P+ S V Sbjct: 24 EMTDDTTDDGLNTEEIRAPYTTEEMDEPEKAALLPKIPKKSPV 66
>RPC_BP163 (P15238) Repressor protein C| Length = 262 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -3 Query: 375 LKSRMHQCLIQIKNKGGSRAAPSLLWKKNGSKLGYNHR*LRQILYKA 235 L R+ Q I N RAA S++W++ +LG + + +RQ++ +A Sbjct: 28 LARRVGQSQQAINNLFAGRAASSMVWRELARELGIDEQEMRQMMTEA 74
>DPOL_BPT5 (P19822) DNA polymerase (EC 2.7.7.7)| Length = 829 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 444 PYIDCVISEIKTNWESEIRIFTGLKSRMHQCLIQIKNKG 328 P+++C +++ K E+ F LK + +C QIKN G Sbjct: 599 PFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG 637 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,554,521 Number of Sequences: 219361 Number of extensions: 1361200 Number of successful extensions: 4468 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4338 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4466 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
