ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basda07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72) 30 4.4
2YANB_SCHPO (Q10076) Hypothetical zinc finger protein C3H1.11 in ... 29 5.7
3CPB3_CAEEL (O01835) Cytoplasmic polyadenylation element-binding ... 29 7.5
4IF2_BUCAP (Q8K9H1) Translation initiation factor IF-2 28 9.7

>HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72)|
          Length = 644

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 71  HYGGRDFYDSSPHKQANESSRNYKEDNTDGSLATR 175
           H GG DF +   +  ANE  R YK+D T    A R
Sbjct: 226 HLGGEDFDNRLVNHFANEFKRKYKKDLTTNQRALR 260



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>YANB_SCHPO (Q10076) Hypothetical zinc finger protein C3H1.11 in chromosome I|
          Length = 582

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 325 APXXXXLFMPDDSCQLYSLPARPAPFYSLFTIGESTAKYLVVQ*TLPPITS 173
           AP      +P +SC+ YSLP+ P+          S+  Y+  Q   PP+ S
Sbjct: 27  APAQSSSPLPSNSCREYSLPSHPSTH-------NSSVAYVDSQDNKPPLVS 70



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>CPB3_CAEEL (O01835) Cytoplasmic polyadenylation element-binding protein 3|
          Length = 751

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 5   TKYGKQFYPNESS----ESPYFGSSVHYGGRDFYDSSPHKQANESSRNY 139
           T YG   +P  S+    + PY+G++++YG   F     H  A   S NY
Sbjct: 704 TYYGSPNHPTSSNISQPQQPYYGANLYYG---FIPPQQHPSAMMRSPNY 749



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>IF2_BUCAP (Q8K9H1) Translation initiation factor IF-2|
          Length = 867

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +2

Query: 2   LTKYGKQFYPNESSESPYFGSSVHYGGRDFYDSSPHKQANESSRNYKEDNTDGSLAT 172
           L K  K    N++ ++     ++++    FY     K   E+ + YKE+  D  L T
Sbjct: 150 LNKLTKSNVFNKNEKNKSLKKNINFNNHSFYSKKTIKNNTENQKLYKEEKKDYHLTT 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,645,674
Number of Sequences: 219361
Number of extensions: 1532539
Number of successful extensions: 4103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4102
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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