ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basda22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily ... 31 2.4
2EVI2B_HUMAN (P34910) EVI2B protein precursor (Ecotropic viral in... 30 5.4
3NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4) 30 7.1
4GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial prec... 25 8.7
5PECA1_RAT (Q3SWT0) Platelet endothelial cell adhesion molecule p... 29 9.3
6KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C... 29 9.3

>TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily member 6B|
           precursor (Decoy receptor for Fas ligand) (Decoy
           receptor 3) (DcR3) (M68)
          Length = 300

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 32  CHPHPDCRSRVLRLKVPGEAPSPASIICSPCGGLP 136
           C PH +C +  L L VPG   S    +C+ C G P
Sbjct: 168 CQPHRNCTALGLALNVPGS--SSHDTLCTSCTGFP 200



to top

>EVI2B_HUMAN (P34910) EVI2B protein precursor (Ecotropic viral integration site|
           2B protein)
          Length = 448

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -1

Query: 472 GSVPSTAEEADMPPPPPL 419
           G+  S++++AD+PPPPPL
Sbjct: 327 GTAVSSSDDADLPPPPPL 344



to top

>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)|
          Length = 1176

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 80   PGEAPSPASIICSPCGGLPSGAGQVWIRCPW 172
            P  + +PA+   S C   PSG    WI CP+
Sbjct: 1030 PTSSATPATTASSSCTTNPSGPASPWISCPF 1060



to top

>GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial precursor (EC|
           3.5.1.2) (GLS) (L-glutamine amidohydrolase)
           (K-glutaminase) [Contains: Glutaminase kidney isoform 68
           kDa chain; Glutaminase kidney isoform 65 kDa chain]
          Length = 674

 Score = 25.4 bits (54), Expect(2) = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 223 PWGGAGMKKKGPGS 182
           PW G G + KGPGS
Sbjct: 56  PWWGGGGRAKGPGS 69



 Score = 22.3 bits (46), Expect(2) = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 135 GRPPQGEQMMEAGLGASP 82
           G PPQ +Q  +   GASP
Sbjct: 87  GTPPQQQQQQQQQPGASP 104



to top

>PECA1_RAT (Q3SWT0) Platelet endothelial cell adhesion molecule precursor|
           (PECAM-1) (CD31 antigen)
          Length = 678

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 29  SCHPHPDCRSRVLRLKV 79
           +CH HP+ RS +LR+KV
Sbjct: 469 NCHSHPEVRSEILRVKV 485



to top

>KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 769

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 198 RKAQGRRQSQGQRIHTCPAPEGRPP-----QGEQMMEAGLGASPG 79
           R  QG  + Q Q + T   PE  PP     Q +Q  + G G SPG
Sbjct: 11  RGCQGTGKQQPQPVPTPQPPESSPPPLPPPQQQQCSQPGTGPSPG 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,501,965
Number of Sequences: 219361
Number of extensions: 1334752
Number of successful extensions: 6099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6058
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top