Clone Name | basd3p08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463995.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1046 Score = 470 bits (237), Expect = e-129 Identities = 451/521 (86%), Gaps = 1/521 (0%) Strand = Plus / Plus Query: 1 caccatggcncaagctcgccaactacgacaacctctttcctgcacttcgagaatttgtcg 60 ||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||| | Sbjct: 186 caccatggc-caaactcgccaactaccacaacctgtttcctgcacttcgagaatttgttg 244 Query: 61 gcacaggaaaacccgtgtggggaacctgtgctgggctcatcttccttgcaaacaaggcag 120 | ||||||| || || |||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 245 gtacaggaaggcctgtctggggaacttgtgctggactcatcttcctagctaacaaggcag 304 Query: 121 tagggcagaaaacaggaggccaagagcttgttggtgggctagattgtactgtccaccgta 180 |||| || ||| | ||||| || |||||| |||| || |||||||||||||||||||| | Sbjct: 305 taggccaaaaatccggaggtcaggagcttattggaggactagattgtactgtccaccgga 364 Query: 181 acttttttgggagtcagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcag 240 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 365 acttttttgggagccagcttcaaagctttgaaacggaactttcagtgccaatgcttgcag 424 Query: 241 agaaggaaggagggagtaatacatgtcgtggcgtatttatacgagcacctgctatcctag 300 |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | | Sbjct: 425 agaaggaaggagggagcgatacatgccgtggcgtatttatacgagcacctgctatcttgg 484 Query: 301 aagtaggccaggatgttgaagtattggccgattgccctgttcctgctggcagacccagca 360 | ||||| ||||||||||| |||| ||||| |||||||| | | |||||||| | Sbjct: 485 atgtaggttcaaatgttgaagtactggcggattgtcctgttccatcggatagacccagta 544 Query: 361 ttacaataacatctggcgagggtgtggaggaccaagtgtactccaaagatcgggtgattg 420 |||||||| | ||||| |||||||| ||||| |||||||||| ||||||||||| |||| Sbjct: 545 ttacaatagcgtctggagagggtgttgaggaagaagtgtactcgaaagatcgggtaattg 604 Query: 421 ttgcagtacgacaagggaacatccttgccaccgcatttcacccagagctaacatcagact 480 |||| ||| | |||||||||||||| || || || ||||||||||| | |||||||||| Sbjct: 605 ttgctgtaaggcaagggaacatcctcgctactgcttttcacccagaattgacatcagact 664 Query: 481 ctagatggcatcaactcttcttggacatggacaaagaatct 521 |||||||||||| ||||| |||||||||| ||||||||| Sbjct: 665 ctagatggcatcggttcttcctggacatggataaagaatct 705
>dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103H03, full insert sequence Length = 1047 Score = 470 bits (237), Expect = e-129 Identities = 451/521 (86%), Gaps = 1/521 (0%) Strand = Plus / Plus Query: 1 caccatggcncaagctcgccaactacgacaacctctttcctgcacttcgagaatttgtcg 60 ||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||| | Sbjct: 186 caccatggc-caaactcgccaactaccacaacctgtttcctgcacttcgagaatttgttg 244 Query: 61 gcacaggaaaacccgtgtggggaacctgtgctgggctcatcttccttgcaaacaaggcag 120 | ||||||| || || |||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 245 gtacaggaaggcctgtctggggaacttgtgctggactcatcttcctagctaacaaggcag 304 Query: 121 tagggcagaaaacaggaggccaagagcttgttggtgggctagattgtactgtccaccgta 180 |||| || ||| | ||||| || |||||| |||| || |||||||||||||||||||| | Sbjct: 305 taggccaaaaatccggaggtcaggagcttattggaggactagattgtactgtccaccgga 364 Query: 181 acttttttgggagtcagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcag 240 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 365 acttttttgggagccagcttcaaagctttgaaacggaactttcagtgccaatgcttgcag 424 Query: 241 agaaggaaggagggagtaatacatgtcgtggcgtatttatacgagcacctgctatcctag 300 |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | | Sbjct: 425 agaaggaaggagggagcgatacatgccgtggcgtatttatacgagcacctgctatcttgg 484 Query: 301 aagtaggccaggatgttgaagtattggccgattgccctgttcctgctggcagacccagca 360 | ||||| ||||||||||| |||| ||||| |||||||| | | |||||||| | Sbjct: 485 atgtaggttcaaatgttgaagtactggcggattgtcctgttccatcggatagacccagta 544 Query: 361 ttacaataacatctggcgagggtgtggaggaccaagtgtactccaaagatcgggtgattg 420 |||||||| | ||||| |||||||| ||||| |||||||||| ||||||||||| |||| Sbjct: 545 ttacaatagcgtctggagagggtgttgaggaagaagtgtactcgaaagatcgggtaattg 604 Query: 421 ttgcagtacgacaagggaacatccttgccaccgcatttcacccagagctaacatcagact 480 |||| ||| | |||||||||||||| || || || ||||||||||| | |||||||||| Sbjct: 605 ttgctgtaaggcaagggaacatcctcgctactgcttttcacccagaattgacatcagact 664 Query: 481 ctagatggcatcaactcttcttggacatggacaaagaatct 521 |||||||||||| ||||| |||||||||| ||||||||| Sbjct: 665 ctagatggcatcggttcttcctggacatggataaagaatct 705
>gb|BT017588.1| Zea mays clone EL01N0430D12.c mRNA sequence Length = 794 Score = 317 bits (160), Expect = 2e-83 Identities = 352/416 (84%) Strand = Plus / Plus Query: 117 gcagtagggcagaaaacaggaggccaagagcttgttggtgggctagattgtactgtccac 176 ||||||||||| |||||||| || || || |||||||| || |||||||||| |||||| Sbjct: 11 gcagtagggcaaaaaacaggggggcaggaacttgttggaggattagattgtacagtccac 70 Query: 177 cgtaacttttttgggagtcagcttcaaagcttcgaaacagaactttcagtgccaatgctt 236 || ||||||||||||||||||||||||||||| || ||||| ||||| ||||||| |||| Sbjct: 71 cgaaacttttttgggagtcagcttcaaagctttgagacagagctttccgtgccaaagctt 130 Query: 237 gcagagaaggaaggagggagtaatacatgtcgtggcgtatttatacgagcacctgctatc 296 | |||||||||||||||| | ||||||| || || |||| |||| ||||||||||| Sbjct: 131 tcggagaaggaaggagggaatgatacatgccgcggtgtatgggtacgggcacctgctata 190 Query: 297 ctagaagtaggccaggatgttgaagtattggccgattgccctgttcctgctggcagaccc 356 || |||||||| | ||||||||| ||||||| |||||||| |||||||||| ||||||| Sbjct: 191 ctggaagtaggtccagatgttgaaatattggcggattgccccgttcctgctgacagaccc 250 Query: 357 agcattacaataacatctggcgagggtgtggaggaccaagtgtactccaaagatcgggtg 416 |||||||||||| ||| ||| |||||| ||||| ||| ||| || ||||||||||| Sbjct: 251 agcattacaatatcatttggggagggtactgaggaagaagagtattcaaaagatcgggta 310 Query: 417 attgttgcagtacgacaagggaacatccttgccaccgcatttcacccagagctaacatca 476 ||||||||||| || |||||||||||||| || || || || |||||||| | |||||| Sbjct: 311 attgttgcagtgcggcaagggaacatcctcgcaactgctttccacccagaattgacatca 370 Query: 477 gactctagatggcatcaactcttcttggacatggacaaagaatctcaagcaaaggc 532 ||||| |||||||||| |||||||||||||||| |||||||| | ||||||||| Sbjct: 371 gactccagatggcatcgtttcttcttggacatggataaagaatccccagcaaaggc 426
>gb|AY109859.1| Zea mays CL21031_1 mRNA sequence Length = 848 Score = 198 bits (100), Expect = 1e-47 Identities = 220/260 (84%) Strand = Plus / Plus Query: 273 gtatttatacgagcacctgctatcctagaagtaggccaggatgttgaagtattggccgat 332 ||||||||||| ||||||||||| | |||||||| | ||||||||| ||||||| ||| Sbjct: 221 gtatttatacgggcacctgctatattggaagtaggtccagatgttgaaatattggcggat 280 Query: 333 tgccctgttcctgctggcagacccagcattacaataacatctggcgagggtgtggaggac 392 ||||||||||||| || ||||||||||||||||||| ||| ||| |||||| ||||| Sbjct: 281 tgccctgttcctgttgacagacccagcattacaatatcatttggggagggtactgaggaa 340 Query: 393 caagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccacc 452 ||| ||| || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct: 341 gaagagtattcaaaagatcgggtaattgttgcagtgcggcaagggaacatcctcgcaact 400 Query: 453 gcatttcacccagagctaacatcagactctagatggcatcaactcttcttggacatggac 512 || || |||||||| | ||||||||||| |||||||||| |||||||||||||||| Sbjct: 401 gctttccacccagaattgacatcagactccagatggcatcgtttcttcttggacatggat 460 Query: 513 aaagaatctcaagcaaaggc 532 |||||||| | ||||||||| Sbjct: 461 aaagaatccccagcaaaggc 480 Score = 97.6 bits (49), Expect = 4e-17 Identities = 127/159 (79%) Strand = Plus / Plus Query: 78 tggggaacctgtgctgggctcatcttccttgcaaacaaggcagtagggcagaaaacagga 137 |||||||||||||||||||||||||| ||||||||||| |||||||||| || Sbjct: 26 tggggaacctgtgctgggctcatctttcttgcaaacaaagcagtagggcnnnnnncannn 85 Query: 138 ggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggagtcag 197 || || |||||||| || |||||||||| |||||||| ||| ||||||||| Sbjct: 86 nnncaggaacttgttggaggattagattgtacagtccaccgaaacnnnnnngggagtcag 145 Query: 198 cttcaaagcttcgaaacagaactttcagtgccaatgctt 236 ||||||||||| || ||||| ||||| ||||||| |||| Sbjct: 146 cttcaaagctttgagacagagctttccgtgccaaagctt 184
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 182 bits (92), Expect = 8e-43 Identities = 170/196 (86%) Strand = Plus / Minus Query: 195 cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 254 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1567689 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 1567630 Query: 255 agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 314 || ||||||| |||||||||||||||||||||||||||||| | || ||||| || Sbjct: 1567629 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 1567570 Query: 315 gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 374 ||||||||| |||| ||||| |||||||| | | |||||||| ||||||||| | ||| Sbjct: 1567569 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 1567510 Query: 375 ggcgagggtgtggagg 390 || |||||||| |||| Sbjct: 1567509 ggagagggtgttgagg 1567494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 36 tttcctgcacttcgagaatttgtcggcacaggaaaacccgtgtggggaacctgtgctggg 95 ||||||||||||||||||||||| || ||||||| || || |||||||| |||||||| Sbjct: 1568026 tttcctgcacttcgagaatttgttggtacaggaaggcctgtctggggaacttgtgctgga 1567967 Query: 96 ctcatcttccttgcaaacaaggcagtagg 124 ||||||||||| || |||||||||||||| Sbjct: 1567966 ctcatcttcctagctaacaaggcagtagg 1567938 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 394 aagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccaccg 453 |||||||||| ||||||||||| |||||||| ||| | |||||||||||||| || || | Sbjct: 1566712 aagtgtactcgaaagatcgggtaattgttgctgtaaggcaagggaacatcctcgctactg 1566653 Query: 454 catttcacccagagctaacatcagactctagatgg 488 | ||||||||||| | |||||||||||||||||| Sbjct: 1566652 cttttcacccagaattgacatcagactctagatgg 1566618 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 135 ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggag 193 ||||| || |||||| |||| || |||||||||||||||||||| |||||||||||||| Sbjct: 1567859 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggag 1567801
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1007_D04 Length = 125503 Score = 182 bits (92), Expect = 8e-43 Identities = 170/196 (86%) Strand = Plus / Minus Query: 195 cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 254 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 4792 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 4733 Query: 255 agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 314 || ||||||| |||||||||||||||||||||||||||||| | || ||||| || Sbjct: 4732 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 4673 Query: 315 gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 374 ||||||||| |||| ||||| |||||||| | | |||||||| ||||||||| | ||| Sbjct: 4672 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 4613 Query: 375 ggcgagggtgtggagg 390 || |||||||| |||| Sbjct: 4612 ggagagggtgttgagg 4597 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 36 tttcctgcacttcgagaatttgtcggcacaggaaaacccgtgtggggaacctgtgctggg 95 ||||||||||||||||||||||| || ||||||| || || |||||||| |||||||| Sbjct: 5129 tttcctgcacttcgagaatttgttggtacaggaaggcctgtctggggaacttgtgctgga 5070 Query: 96 ctcatcttccttgcaaacaaggcagtagg 124 ||||||||||| || |||||||||||||| Sbjct: 5069 ctcatcttcctagctaacaaggcagtagg 5041 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 394 aagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccaccg 453 |||||||||| ||||||||||| |||||||| ||| | |||||||||||||| || || | Sbjct: 3815 aagtgtactcgaaagatcgggtaattgttgctgtaaggcaagggaacatcctcgctactg 3756 Query: 454 catttcacccagagctaacatcagactctagatgg 488 | ||||||||||| | |||||||||||||||||| Sbjct: 3755 cttttcacccagaattgacatcagactctagatgg 3721 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 135 ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggag 193 ||||| || |||||| |||| || |||||||||||||||||||| |||||||||||||| Sbjct: 4962 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggag 4904
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 182 bits (92), Expect = 8e-43 Identities = 170/196 (86%) Strand = Plus / Minus Query: 195 cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 254 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 131110 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 131051 Query: 255 agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 314 || ||||||| |||||||||||||||||||||||||||||| | || ||||| || Sbjct: 131050 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 130991 Query: 315 gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 374 ||||||||| |||| ||||| |||||||| | | |||||||| ||||||||| | ||| Sbjct: 130990 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 130931 Query: 375 ggcgagggtgtggagg 390 || |||||||| |||| Sbjct: 130930 ggagagggtgttgagg 130915 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 36 tttcctgcacttcgagaatttgtcggcacaggaaaacccgtgtggggaacctgtgctggg 95 ||||||||||||||||||||||| || ||||||| || || |||||||| |||||||| Sbjct: 131447 tttcctgcacttcgagaatttgttggtacaggaaggcctgtctggggaacttgtgctgga 131388 Query: 96 ctcatcttccttgcaaacaaggcagtagg 124 ||||||||||| || |||||||||||||| Sbjct: 131387 ctcatcttcctagctaacaaggcagtagg 131359 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 394 aagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccaccg 453 |||||||||| ||||||||||| |||||||| ||| | |||||||||||||| || || | Sbjct: 130133 aagtgtactcgaaagatcgggtaattgttgctgtaaggcaagggaacatcctcgctactg 130074 Query: 454 catttcacccagagctaacatcagactctagatgg 488 | ||||||||||| | |||||||||||||||||| Sbjct: 130073 cttttcacccagaattgacatcagactctagatgg 130039 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 135 ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggag 193 ||||| || |||||| |||| || |||||||||||||||||||| |||||||||||||| Sbjct: 131280 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggag 131222
>gb|AY532658.1| Nicotiana tabacum putative pyridoxine biosynthesis protein (Pdx2) mRNA, complete cds Length = 756 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 123 gggcagaaaacaggaggccaagagcttgttggtgggctagattgtactgtccaccgtaac 182 ||||||||||| ||||| || || || |||| || || |||||||| |||||||| ||| Sbjct: 268 gggcagaaaactggaggacaggaactgattggaggcctcgattgtaccgtccaccgaaac 327 Query: 183 ttttttgggagtcagcttcaaagcttcgaaacagaactt 221 ||||||||||| ||| |||||||||| || ||||||||| Sbjct: 328 ttttttgggagccagattcaaagctttgagacagaactt 366
>gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome 12, complete sequence Length = 192647 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 179151 cttgcagagaaggaaggagggag 179129
>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 204394 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 167971 cttgcagagaaggaaggagggag 167993 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 136161 cttgcagagaaggaaggagggag 136139 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 79471 cttgcagagaaggaaggagggag 79449
>dbj|AP001007.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-687M24, complete sequence Length = 203840 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 86 ctgtgctgggctcatcttccttg 108 ||||||||||||||||||||||| Sbjct: 164875 ctgtgctgggctcatcttccttg 164897
>dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-100P11, complete sequence Length = 176129 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 86 ctgtgctgggctcatcttccttg 108 ||||||||||||||||||||||| Sbjct: 37014 ctgtgctgggctcatcttccttg 37036
>emb|CT485612.7| Mouse DNA sequence from clone RP24-441F13 on chromosome 12, complete sequence Length = 116475 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 86006 cttgcagagaaggaaggagggag 86028 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 70202 cttgcagagaaggaaggagggag 70180
>gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, complete sequence Length = 186243 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 185071 cttgcagagaaggaaggagggag 185049 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gcagagaaggaaggagggag 256 |||||||||||||||||||| Sbjct: 177391 gcagagaaggaaggagggag 177410
>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence Length = 212734 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 34485 cttgcagagaaggaaggagggag 34507 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcagagaaggaaggagggag 256 |||||||||||||||||||| Sbjct: 42165 gcagagaaggaaggagggag 42146
>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete sequence Length = 156278 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 155924 cttgcagagaaggaaggagggag 155946 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 124114 cttgcagagaaggaaggagggag 124092
>emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chromosome 12, complete sequence Length = 179748 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 cttgcagagaaggaaggagggag 256 ||||||||||||||||||||||| Sbjct: 174237 cttgcagagaaggaaggagggag 174259
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 aaggaaggagggagtaatacat 264 |||||||||||||||||||||| Sbjct: 19207911 aaggaaggagggagtaatacat 19207932
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 aaggaaggagggagtaatacat 264 |||||||||||||||||||||| Sbjct: 141433 aaggaaggagggagtaatacat 141454
>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence Length = 218532 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 334 gccctgttcctgctggcagacc 355 |||||||||||||||||||||| Sbjct: 157056 gccctgttcctgctggcagacc 157035
>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence Length = 229988 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 gccctgttcctgctggcagacc 355 |||||||||||||||||||||| Sbjct: 94926 gccctgttcctgctggcagacc 94947
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence Length = 215490 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 334 gccctgttcctgctggcagacc 355 |||||||||||||||||||||| Sbjct: 91289 gccctgttcctgctggcagacc 91268
>ref|XM_447364.1| Candida glabrata CBS138 hypothetical protein (CAGL0I02574g) partial mRNA Length = 1206 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 505 acatggacaaagaatctcaagcaaaggcc 533 ||||||||||||||||| ||| ||||||| Sbjct: 428 acatggacaaagaatctgaagaaaaggcc 456
>gb|AC104095.4| Mus musculus BAC clone RP23-403G12 from chromosome 19, complete sequence Length = 187859 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 agagaaggaaggagggagtaa 259 ||||||||||||||||||||| Sbjct: 64486 agagaaggaaggagggagtaa 64506
>gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete sequence Length = 116179 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 atgcttgcagagaaggaagga 251 ||||||||||||||||||||| Sbjct: 91640 atgcttgcagagaaggaagga 91620
>emb|AL109840.24|HSJ543J19 Human DNA sequence from clone RP4-543J19 on chromosome 20 Contains the 3' end of the GNAS complex locus, the CTSZ gene for cathepsin Z, the ATP5E gene for ATP synthase (H+ transporting, mitochondrial F1 complex, epsilon subunit), the TH1L gene for TH1-like (Drosophila), the gene for tubulin beta 1 class VI (TUBB1), the C20orf45 gene encoding the CGI-107 protein (LOC51012) and four CpG islands, complete sequence Length = 142094 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 ttgcagagaaggaaggaggga 255 ||||||||||||||||||||| Sbjct: 105169 ttgcagagaaggaaggaggga 105189
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 505 acatggacaaagaatctcaagcaaaggcc 533 ||||||||||||||||| ||| ||||||| Sbjct: 232820 acatggacaaagaatctgaagaaaaggcc 232848
>gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete sequence Length = 127568 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 atgcttgcagagaaggaagga 251 ||||||||||||||||||||| Sbjct: 92495 atgcttgcagagaaggaagga 92515
>ref|XM_680316.1| PREDICTED: Danio rerio similar to solute carrier family 22, member 16 (LOC557279), mRNA Length = 1698 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 ccaggatgttgaagtattggc 328 ||||||||||||||||||||| Sbjct: 1311 ccaggatgttgaagtattggc 1331
>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence Length = 230827 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 ttgcagagaaggaaggaggga 255 ||||||||||||||||||||| Sbjct: 102330 ttgcagagaaggaaggaggga 102350
>emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on chromosome 12, complete sequence Length = 219570 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 cagagaaggaaggagggagta 258 ||||||||||||||||||||| Sbjct: 130905 cagagaaggaaggagggagta 130925
>gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, complete sequence Length = 200563 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 agagaaggaaggagggagtaa 259 ||||||||||||||||||||| Sbjct: 25843 agagaaggaaggagggagtaa 25823
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 caatgcttgcagagaaggaa 248 |||||||||||||||||||| Sbjct: 17143 caatgcttgcagagaaggaa 17124
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 caatgcttgcagagaaggaa 248 |||||||||||||||||||| Sbjct: 115221 caatgcttgcagagaaggaa 115202
>gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosome 9, complete sequence Length = 142071 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 agggcagaaaacaggaggccaaga 145 |||||||||||||||| ||||||| Sbjct: 19051 agggcagaaaacaggaagccaaga 19028
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cctgttcctgctggcagacc 355 |||||||||||||||||||| Sbjct: 355162 cctgttcctgctggcagacc 355181
>ref|XM_750087.1| Aspergillus fumigatus Af293 pseudouridylate synthase (Afu2g08460) partial mRNA Length = 1734 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gcttgcagagaaggaaggag 252 |||||||||||||||||||| Sbjct: 654 gcttgcagagaaggaaggag 673
>gb|AC138016.14| Medicago truncatula clone mth2-34f15, complete sequence Length = 116164 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 caagagcttgttggtgggctagattgtactgt 172 ||||| ||||||||||| || ||||||||||| Sbjct: 23795 caagaacttgttggtggacttgattgtactgt 23826
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cctgttcctgctggcagacc 355 |||||||||||||||||||| Sbjct: 1923093 cctgttcctgctggcagacc 1923112
>gb|AC092963.4| Homo sapiens 3q BAC RP11-396A13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145390 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 caactacgacaacctctttcctgc 43 ||||||||| |||||||||||||| Sbjct: 113509 caactacgataacctctttcctgc 113532
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 caatgcttgcagagaaggaa 248 |||||||||||||||||||| Sbjct: 14386435 caatgcttgcagagaaggaa 14386416
>gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, complete sequence Length = 235968 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 gacaagggaacatccttgcc 449 |||||||||||||||||||| Sbjct: 153915 gacaagggaacatccttgcc 153934
>ref|XM_235262.3| PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 4 (predicted) (Tm7sf4_predicted), mRNA Length = 1445 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tttgggagtcagcttcaaag 205 |||||||||||||||||||| Sbjct: 896 tttgggagtcagcttcaaag 877
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence Length = 206482 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 agggcagaaaacaggaggccaaga 145 |||||||||||||||| ||||||| Sbjct: 96440 agggcagaaaacaggaagccaaga 96463
>emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in linkage group 20, complete sequence Length = 116609 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 caggatgttgaagtattggc 328 |||||||||||||||||||| Sbjct: 113786 caggatgttgaagtattggc 113767
>emb|AL163032.3|CNS01RI9 Human chromosome 14 DNA sequence BAC C-2303B20 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 130313 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gcagagaaggaaggagggag 256 |||||||||||||||||||| Sbjct: 108391 gcagagaaggaaggagggag 108410
>gb|AC005988.1|AC005988 Homo sapiens chromosome 17, clone hRPK.299_G_24, complete sequence Length = 173126 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cttgcagagaaggaaggagg 253 |||||||||||||||||||| Sbjct: 96153 cttgcagagaaggaaggagg 96134
>gb|AC122515.5| Mus musculus BAC clone RP24-455N18 from 9, complete sequence Length = 164271 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 agggcagaaaacaggaggccaaga 145 |||||||||||||||| ||||||| Sbjct: 131651 agggcagaaaacaggaagccaaga 131628
>emb|AL731712.6| Mouse DNA sequence from clone RP23-100M24 on chromosome 2, complete sequence Length = 215428 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 430 gacaagggaacatccttgccaccgcatt 457 |||||||||| |||||||||||| |||| Sbjct: 41909 gacaagggaaaatccttgccacctcatt 41936 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,924,880 Number of Sequences: 3902068 Number of extensions: 4924880 Number of successful extensions: 117711 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117405 Number of HSP's gapped (non-prelim): 304 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)