ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basda24 |
|---|---|
| Clone Library Name | barley_pub |
>SEY1_ASHGO (Q74ZD5) Protein SEY1| Length = 791 Score = 36.2 bits (82), Expect = 0.055 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = +1 Query: 253 AWLDIYTPVYEHMKVDIRMNLKAKRVELKTRHDTPDVSNLQKCADFVHAFMLGFDIADGV 432 AW +Y +++++K D +++ +R E K R+D DV L K + V A GF +A Sbjct: 549 AWTILYDIIHQYLKEDNVVSILRERFESKFRYDQNDVPRLWKNEEEVDA---GFKVAREH 605 Query: 433 ALLRLDDLYVDS 468 AL L+ L + S Sbjct: 606 ALNMLNTLSIAS 617
>SEY1_CANGA (Q6FLC5) Protein SEY1| Length = 783 Score = 33.1 bits (74), Expect = 0.47 Identities = 24/68 (35%), Positives = 35/68 (51%) Frame = +1 Query: 253 AWLDIYTPVYEHMKVDIRMNLKAKRVELKTRHDTPDVSNLQKCADFVHAFMLGFDIADGV 432 AW + T V++++K D ++L R E K R+D+ DV L K D + F +A Sbjct: 538 AWTLLETVVHDYLKEDTIVSLLRDRFESKFRYDSNDVPRLWKNEDEIDQ---SFRVAKEH 594 Query: 433 ALLRLDDL 456 AL LD L Sbjct: 595 ALEILDIL 602
>COAT3_MIMIV (Q5UQN7) Probable capsid protein 3| Length = 2156 Score = 32.7 bits (73), Expect = 0.61 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Frame = +1 Query: 256 WLDIYTPVYEHMKVD------IRMNLKAKRVELKTRHDTPDVSNLQKCADFVHAFMLGFD 417 +L+I E+MK+ I+ + K + +K + D SN+QK D +H + FD Sbjct: 1769 FLNIINHTIENMKIPEIPDKLIKYCEQIKSMYIKHSDEIFDQSNIQKIRDNLHILKINFD 1828 Query: 418 IADGVALLRL 447 I D LL++ Sbjct: 1829 ITDKQLLLQM 1838
>XPP_YEAST (Q07825) Putative Xaa-Pro aminopeptidase (EC 3.4.11.9)| Length = 749 Score = 32.0 bits (71), Expect = 1.0 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 10/50 (20%) Frame = -2 Query: 385 PHTSEGCSHLVYH----------ALFSTQPFLP*GSCGCRPSCARRQGCR 266 P TS+G +H + H A S +PF P C C P RQG R Sbjct: 5 PSTSDGRAHSISHVPGTHMRGTSASHSPRPFRPCADCTCSPGLLSRQGRR 54
>HEM13_HORVU (O65796) Glutamyl-tRNA reductase 3, chloroplast precursor (EC| 1.2.1.70) (GluTR) Length = 535 Score = 30.8 bits (68), Expect = 2.3 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 85 IAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSGGR 198 +A+T+ S++A AA GV KPR A P +GGR Sbjct: 1 MASTSTASATAMAGAFAAAGVNKPRGSAACPRVPAGGR 38
>INSI1_HUMAN (O15503) Insulin-induced gene 1 protein (INSIG-1)| Length = 277 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +3 Query: 159 VRRSDAKRDERRAATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 311 ++R+ E AT+ P C VVG L+PC+ +H G PH+ Sbjct: 107 IQRNVTLFPEEVIATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 156
>NOS_ORYSA (Q6YPG5) Putative nitric-oxide synthase (EC 1.14.13.39)| Length = 547 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/73 (27%), Positives = 28/73 (38%) Frame = +3 Query: 84 DRCDGRQVFLCXXXXXXXXXXXEAAVRRSDAKRDERRAATVPQGPGAAAPLCAAEEGVVG 263 DR G Q+ E RR + ++ R + G APL A+E G Sbjct: 57 DRFLGTQLAAEAAARVLAPEDAERRRRRREKRKALARKPSAAACYGCGAPLQTADEAAPG 116 Query: 264 YLHPCLRAHEGRH 302 Y+HP + RH Sbjct: 117 YVHPATYDLKKRH 129
>PI51C_HUMAN (O60331) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I gamma) (PtdIns(4)P-5-kinase gamma) (PtdInsPKIgamma) (PIP5KIgamma) Length = 668 Score = 30.0 bits (66), Expect = 4.0 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +1 Query: 286 HMKVDIRMNLKAKRVELKTRHDT-PDVSNLQKCADFVHAFMLGFDIADG-VALLRLDDLY 459 H+K D++ + +R K + + P +L D +L D V L+ D L Sbjct: 249 HLKFDLKGSTYKRRASKKEKEKSFPTYKDLDFMQDMPEGLLLDADTFSALVKTLQRDCLV 308 Query: 460 VDSFEIKDVKTLRGEH 507 ++SF+I D L G H Sbjct: 309 LESFKIMDYSLLLGVH 324
>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)| Length = 257 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 198 ATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 311 AT+ P C VVG L+PC+ +H G PH+ Sbjct: 100 ATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 136
>INSI1_RAT (Q08755) Insulin-induced gene 1 protein (INSIG-1) (Insulin-induced| growth response protein CL-6) (Immediate-early protein CL-6) Length = 259 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 198 ATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 311 AT+ P C VVG L+PC+ +H G PH+ Sbjct: 102 ATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 138
>INSI1_MOUSE (Q8BGI3) Insulin-induced gene 1 protein (INSIG-1)| Length = 259 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 198 ATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 311 AT+ P C VVG L+PC+ +H G PH+ Sbjct: 102 ATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 138
>PI51C_RAT (Q5I6B8) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I gamma) (PtdIns(4)P-5-kinase gamma) (PtdInsPKIgamma) (PIP5KIgamma) Length = 688 Score = 29.6 bits (65), Expect = 5.2 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +1 Query: 286 HMKVDIRMNLKAKRVELKTRHDT-PDVSNLQKCADFVHAFMLGFDIADG-VALLRLDDLY 459 H+K D++ + +R K + + P +L D +L D V L+ D L Sbjct: 249 HLKFDLKGSTYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLV 308 Query: 460 VDSFEIKDVKTLRGEH 507 ++SF+I D L G H Sbjct: 309 LESFKIMDYSLLLGVH 324
>PI51C_MOUSE (O70161) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I gamma) (PtdIns(4)P-5-kinase gamma) (PtdInsPKIgamma) (PIP5KIgamma) Length = 661 Score = 29.6 bits (65), Expect = 5.2 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +1 Query: 286 HMKVDIRMNLKAKRVELKTRHDT-PDVSNLQKCADFVHAFMLGFDIADG-VALLRLDDLY 459 H+K D++ + +R K + + P +L D +L D V L+ D L Sbjct: 249 HLKFDLKGSTYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLV 308 Query: 460 VDSFEIKDVKTLRGEH 507 ++SF+I D L G H Sbjct: 309 LESFKIMDYSLLLGVH 324
>YGCB_ECOLI (P38036) Hypothetical protein ygcB| Length = 888 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = +1 Query: 250 KAWLDIYTPVYEHMKVDIRMNLKAKRVELKTRHDTPDVS--NLQKCADFVH 396 KAWL + +++ K DIR K+ LK TP ++ + Q C F H Sbjct: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNH 114
>PERT_PIG (P09933) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 926 Score = 29.6 bits (65), Expect = 5.2 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = +3 Query: 150 EAAVRRSDAKRDERRAATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHEP 314 E +R + RD RA +P P A P CA E G PC A + R P Sbjct: 347 EGLLRVNTRHRDAGRAF-LPFAPPPAPPACAPEPGTPAARAPCFLAGDSRASEVP 400
>END4_SHIFL (Q83QW6) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +1 Query: 358 DVSNLQKCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLS 513 D S + C D HAF G+D+ + + D I K LRG HL+ Sbjct: 170 DKSRVGVCIDTCHAFAAGYDLRTPA---ECEKTFADFARIVGFKYLRGMHLN 218
>END4_ECOL6 (Q8FFU0) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +1 Query: 358 DVSNLQKCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLS 513 D S + C D HAF G+D+ + + D I K LRG HL+ Sbjct: 170 DKSRVGVCIDTCHAFAAGYDLRTPA---ECEKTFADFARIVGFKYLRGMHLN 218
>DCTP_RHOCA (P37735) C4-dicarboxylate-binding periplasmic protein precursor| Length = 333 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/73 (21%), Positives = 31/73 (42%) Frame = +1 Query: 73 DKAPIAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSGGRPQYRKVQVPPHRFAPLKK 252 D P G + A + D A G+ K + + + G ++ ++ A + Sbjct: 249 DGLPADVRTGLEKAMAESTDYANGIAKEENEKALQAMKDAGTTEFHELT------AEERA 302 Query: 253 AWLDIYTPVYEHM 291 AW ++ TPV++ M Sbjct: 303 AWEEVLTPVHDEM 315
>NCOA2_MOUSE (Q61026) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional| intermediary factor 2) (Glucocorticoid receptor-interacting protein 1) (GRIP-1) Length = 1462 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 181 EMSGGRPQYRKVQVPPHRFAPLKKAWLDI 267 EM+ G PQY + Q PP++ AP ++ L I Sbjct: 1015 EMNMGGPQYNQQQAPPNQTAPWPESILPI 1043
>H1_LYTPI (P06144) Late histone H1| Length = 210 Score = 28.9 bits (63), Expect = 8.9 Identities = 20/65 (30%), Positives = 28/65 (43%) Frame = +1 Query: 61 QMEVDKAPIAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSGGRPQYRKVQVPPHRFA 240 Q E A A K ++ A AA V+KP A P++ + +P +K P Sbjct: 118 QKEKKAAKTKARKEKLAAKKAAKKAAKKVKKPAAKAKKPAKKAAKKPAAKKAAKKPAAKK 177 Query: 241 PLKKA 255 P KKA Sbjct: 178 PAKKA 182
>RK3_CHLS6 (Q7XYP4) 50S ribosomal protein L3, chloroplast precursor| Length = 302 Score = 28.9 bits (63), Expect = 8.9 Identities = 24/97 (24%), Positives = 41/97 (42%) Frame = +1 Query: 79 APIAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSGGRPQYRKVQVPPHRFAPLKKAW 258 +P+AA A SSSA +A+ +E P YR V+V ++ W Sbjct: 34 SPMAAAARASSSALVALPGGRMIEVPHM-----------TKDYRDVKV-----CSRQRKW 77 Query: 259 LDIYTPVYEHMKVDIRMNLKAKRVELKTRHDTPDVSN 369 + EHM+ I+M L + + T +D +++ Sbjct: 78 -----EIREHMRDPIKMGLMGTKAGMTTYYDDEGIAH 109
>NCOA2_RAT (Q9WUI9) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional| intermediary factor 2) Length = 1465 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 181 EMSGGRPQYRKVQVPPHRFAPLKKAWLDI 267 EM+ G PQY + Q PP++ AP ++ L I Sbjct: 1015 EMNMGGPQYNQQQAPPNQTAPWPESILPI 1043 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,930,026 Number of Sequences: 219361 Number of extensions: 1266057 Number of successful extensions: 4102 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4099 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
