ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3o23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470212.1| Oryza sativa (japonica cultivar-group), predic... 224 2e-55
2dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
3dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 6e-31
5gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 143 6e-31
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
7gb|AY108713.1| Zea mays PCO101165 mRNA sequence 96 1e-16
8emb|AJ865107.1| Cocos nucifera microsatellite DNA, clone CnCir J2 78 3e-11
9ref|NM_196819.1| Oryza sativa (japonica cultivar-group) putative... 68 3e-08
10gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
12dbj|AK102843.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
14gb|AY813475.1| Schistosoma japonicum SJCHGC06695 protein mRNA, c... 44 0.42
15gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.7
16gb|AC146238.2| Pan troglodytes BAC clone CH251-170A15 from Y, co... 42 1.7
17ref|XM_571336.1| Cryptococcus neoformans var. neoformans JEC21 p... 42 1.7
18ref|XM_965991.1| PREDICTED: Tribolium castaneum similar to Cadhe... 42 1.7
19dbj|BS000585.1| Pan troglodytes chromosome Y clone:PTB-582H02, c... 42 1.7
20gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.7
21gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete seq... 42 1.7
22gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chrom... 42 1.7
23gb|AC016747.7| Homo sapiens BAC clone RP11-493E12 from 2, comple... 42 1.7
24emb|AL845167.7| Mouse DNA sequence from clone RP23-36P16 on chro... 42 1.7
25ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G4... 40 6.6
26gb|AC168269.3| Mus musculus BAC clone RP23-193M17 from chromosom... 40 6.6
27gb|AC158141.8| Mus musculus chromosome 5, clone RP23-281M20, com... 40 6.6
28ref|NM_001007117.1| Danio rerio helentron 3 helitron-like transp... 40 6.6
29emb|AJ784061.1| Influenza B virus (B/Jiangsu/10/03) partial HA g... 40 6.6
30emb|AL161424.13| Human DNA sequence from clone RP11-175B12 on ch... 40 6.6
31emb|AL136117.12| Human DNA sequence from clone CTC-1333E1 on chr... 40 6.6
32gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein... 40 6.6
33gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein... 40 6.6
34emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.6
35emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.6
36emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.6
37emb|BX324181.26| Zebrafish DNA sequence from clone CH211-203O8 i... 40 6.6
38dbj|AB209933.1| Crocodylus niloticus ERa mRNA for estrogen recep... 40 6.6
39gb|AC114301.2| Homo sapiens chromosome 5 clone RP11-143L23, comp... 40 6.6
40gb|AC098567.4| Genomic sequence for Mus musculus, clone RP23-198... 40 6.6
41gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic le... 40 6.6
42gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 6.6
43emb|BX296554.9| Zebrafish DNA sequence from clone DKEYP-30G1 in ... 40 6.6
44gb|DQ067625.1| Paramecium octaurelia histone H4 gene, partial cds 40 6.6
45gb|AC026812.3| Homo sapiens chromosome 5 clone P1_420D1, complet... 40 6.6
46gb|AC007304.11| Homo sapiens chromosome 13 clone 168l22 map 13q1... 40 6.6
47tpg|BK001159.1| TPA: TPA_exp: Danio rerio transposon helitron-li... 40 6.6
48gb|AC154584.3| Mus musculus BAC clone RP23-248M3 from chromosome... 40 6.6
49gb|AC084543.1|CBRG28M02 Caenorhabditis briggsae cosmid G28M02, c... 40 6.6
50gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete se... 40 6.6
51dbj|AB115909.1| Alligator mississippiensis ERa mRNA for estrogen... 40 6.6
52gb|AC002427.1|AC002427 Homo sapiens BAC clone GS1-11E15 from 5q3... 40 6.6
53gb|AF144035.1|AF144035 Nosema locustae transcription initiation ... 40 6.6
54gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete... 40 6.6
55gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Can... 40 6.6
56gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone... 40 6.6
57emb|AL928815.15| Zebrafish DNA sequence from clone BUSM1-257N2 i... 40 6.6
58gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.26... 40 6.6
59gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, comple... 40 6.6
60gb|AC130535.4| Mus musculus BAC clone RP23-326O2 from 5, complet... 40 6.6
61gb|L79911.1|ZFIER Taeniopygia guttata estrogen receptor mRNA, co... 40 6.6
62gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete s... 40 6.6
63gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA... 40 6.6
64gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome... 40 6.6
65dbj|AB055220.1| Caiman crocodilus ER mRNA for estrogen receptor,... 40 6.6 
>ref|XM_470212.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 633

 Score =  224 bits (113), Expect = 2e-55
 Identities = 182/205 (88%)
 Strand = Plus / Plus

                                                                       
Query: 19  atgaggacagaatggtaacaacagaagaaggtcttgcctttgcacagcaatgtggatgcc 78
           ||||||| || ||||| ||||  |||||||||||||||||||| ||| ||| |||||| |
Sbjct: 398 atgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccaggaatctggatgtc 457

                                                                       
Query: 79  tttttctcgaaagcagtgccaaaacaagagaaaatgtggagaaatgttttgaagagcttg 138
           ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 458 tttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttg 517

                                                                       
Query: 139 tgctaaagattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgtcaagagga 198
            | |||||||||||||||| |||||||| | ||||||||| || || || ||||||||||
Sbjct: 518 cgttaaagattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagagga 577

                                    
Query: 199 actcgctgaaacagaagcatgagaa 223
           |||| |||||||||||||| |||||
Sbjct: 578 actctctgaaacagaagcacgagaa 602
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>dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F09, full
           insert sequence
          Length = 1083

 Score =  224 bits (113), Expect = 2e-55
 Identities = 182/205 (88%)
 Strand = Plus / Plus

                                                                       
Query: 19  atgaggacagaatggtaacaacagaagaaggtcttgcctttgcacagcaatgtggatgcc 78
           ||||||| || ||||| ||||  |||||||||||||||||||| ||| ||| |||||| |
Sbjct: 522 atgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccaggaatctggatgtc 581

                                                                       
Query: 79  tttttctcgaaagcagtgccaaaacaagagaaaatgtggagaaatgttttgaagagcttg 138
           ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 582 tttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttg 641

                                                                       
Query: 139 tgctaaagattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgtcaagagga 198
            | |||||||||||||||| |||||||| | ||||||||| || || || ||||||||||
Sbjct: 642 cgttaaagattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagagga 701

                                    
Query: 199 actcgctgaaacagaagcatgagaa 223
           |||| |||||||||||||| |||||
Sbjct: 702 actctctgaaacagaagcacgagaa 726
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>dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043D11, full
           insert sequence
          Length = 1002

 Score =  216 bits (109), Expect = 5e-53
 Identities = 181/205 (88%)
 Strand = Plus / Plus

                                                                       
Query: 19  atgaggacagaatggtaacaacagaagaaggtcttgcctttgcacagcaatgtggatgcc 78
           ||||||| || ||||| ||||  |||||||||||||||||||| |||  || |||||| |
Sbjct: 514 atgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccagggatctggatgtc 573

                                                                       
Query: 79  tttttctcgaaagcagtgccaaaacaagagaaaatgtggagaaatgttttgaagagcttg 138
           ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 574 tttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttg 633

                                                                       
Query: 139 tgctaaagattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgtcaagagga 198
            | |||||||||||||||| |||||||| | ||||||||| || || || ||||||||||
Sbjct: 634 cgttaaagattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagagga 693

                                    
Query: 199 actcgctgaaacagaagcatgagaa 223
           |||| |||||||||||||| |||||
Sbjct: 694 actctctgaaacagaagcacgagaa 718
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 6e-31
 Identities = 108/120 (90%)
 Strand = Plus / Plus

                                                                           
Query: 19      atgaggacagaatggtaacaacagaagaaggtcttgcctttgcacagcaatgtggatgcc 78
               ||||||| || ||||| ||||  |||||||||||||||||||| ||| ||| |||||| |
Sbjct: 2538392 atgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccaggaatctggatgtc 2538451

                                                                           
Query: 79      tttttctcgaaagcagtgccaaaacaagagaaaatgtggagaaatgttttgaagagcttg 138
               ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2538452 tttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttg 2538511



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                           
Query: 145     agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgtcaagaggaactcgc 204
               ||||||||||||| |||||||| | ||||||||| || || || |||||||||||||| |
Sbjct: 2540350 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 2540409

                                  
Query: 205     tgaaacagaagcatgagaa 223
               ||||||||||||| |||||
Sbjct: 2540410 tgaaacagaagcacgagaa 2540428
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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score =  143 bits (72), Expect = 6e-31
 Identities = 108/120 (90%)
 Strand = Plus / Minus

                                                                          
Query: 19     atgaggacagaatggtaacaacagaagaaggtcttgcctttgcacagcaatgtggatgcc 78
              ||||||| || ||||| ||||  |||||||||||||||||||| ||| ||| |||||| |
Sbjct: 131702 atgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccaggaatctggatgtc 131643

                                                                          
Query: 79     tttttctcgaaagcagtgccaaaacaagagaaaatgtggagaaatgttttgaagagcttg 138
              ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 131642 tttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttg 131583



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                          
Query: 145    agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgtcaagaggaactcgc 204
              ||||||||||||| |||||||| | ||||||||| || || || |||||||||||||| |
Sbjct: 129744 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 129685

                                 
Query: 205    tgaaacagaagcatgagaa 223
              ||||||||||||| |||||
Sbjct: 129684 tgaaacagaagcacgagaa 129666
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 6e-31
 Identities = 108/120 (90%)
 Strand = Plus / Plus

                                                                           
Query: 19      atgaggacagaatggtaacaacagaagaaggtcttgcctttgcacagcaatgtggatgcc 78
               ||||||| || ||||| ||||  |||||||||||||||||||| ||| ||| |||||| |
Sbjct: 2538502 atgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccaggaatctggatgtc 2538561

                                                                           
Query: 79      tttttctcgaaagcagtgccaaaacaagagaaaatgtggagaaatgttttgaagagcttg 138
               ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2538562 tttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttg 2538621



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                           
Query: 145     agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgtcaagaggaactcgc 204
               ||||||||||||| |||||||| | ||||||||| || || || |||||||||||||| |
Sbjct: 2540460 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 2540519

                                  
Query: 205     tgaaacagaagcatgagaa 223
               ||||||||||||| |||||
Sbjct: 2540520 tgaaacagaagcacgagaa 2540538
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>gb|AY108713.1| Zea mays PCO101165 mRNA sequence
          Length = 755

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                       
Query: 19  atgaggacagaatggtaacaacagaagaaggtcttgcctttgcacagcaatgtggatgcc 78
           |||||||||||||||| |||| ||||||||||||||| ||||||||  || ||||||| |
Sbjct: 652 atgaggacagaatggtgacaaaagaagaaggtcttgcatttgcacaagaacgtggatgtc 711

                                                   
Query: 79  tttttctcgaaagcagtgccaaaacaagagaaaatgtgga 118
           | ||| |||| || ||||| |||||||||||||| |||||
Sbjct: 712 tctttgtcgagagtagtgctaaaacaagagaaaacgtgga 751
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>emb|AJ865107.1| Cocos nucifera microsatellite DNA, clone CnCir J2
          Length = 527

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 52  ttgcctttgcacagcaatgtggatgcctttttctcgaaagcagtgccaaaacaagagaaa 111
           |||| ||||| || |||| ||||||| | ||||| ||| ||||||| |||||| | ||||
Sbjct: 431 ttgcttttgcgcaacaatatggatgcttgtttcttgaatgcagtgcaaaaacacgggaaa 490

                                  
Query: 112 atgtggagaaatgttttgaagag 134
           |||||||||||||||||||||||
Sbjct: 491 atgtggagaaatgttttgaagag 513
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>ref|NM_196819.1| Oryza sativa (japonica cultivar-group) putative GTP-binding protein
           (OSJNBa0018F16.14), mRNA
          Length = 669

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                       
Query: 36  acaacagaagaaggtcttgcctttgcacagcaatgtggatgcctttttctcgaaagcagt 95
           |||| ||||||||| |||||||||||| |  ||| ||||||||| ||||| || || || 
Sbjct: 445 acaagagaagaagggcttgcctttgcagaagaatctggatgcctatttcttgagagtagc 504

                                                 
Query: 96  gccaaaacaagagaaaatgtggagaaatgttttgaaga 133
           || |||||| |||| ||||| ||||| |||||||||||
Sbjct: 505 gcgaaaacacgagataatgttgagaagtgttttgaaga 542
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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                         
Query: 36    acaacagaagaaggtcttgcctttgcacagcaatgtggatgcctttttctcgaaagcagt 95
             |||| ||||||||| |||||||||||| |  ||| ||||||||| ||||| || || || 
Sbjct: 59196 acaagagaagaagggcttgcctttgcagaagaatctggatgcctatttcttgagagtagc 59137

                                                   
Query: 96    gccaaaacaagagaaaatgtggagaaatgttttgaaga 133
             || |||||| |||| ||||| ||||| |||||||||||
Sbjct: 59136 gcgaaaacacgagataatgttgagaagtgttttgaaga 59099
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                            
Query: 36       acaacagaagaaggtcttgcctttgcacagcaatgtggatgcctttttctcgaaagcagt 95
                |||| ||||||||| |||||||||||| |  ||| ||||||||| ||||| || || || 
Sbjct: 16180307 acaagagaagaagggcttgcctttgcagaagaatctggatgcctatttcttgagagtagc 16180248

                                                      
Query: 96       gccaaaacaagagaaaatgtggagaaatgttttgaaga 133
                || |||||| |||| ||||| ||||| |||||||||||
Sbjct: 16180247 gcgaaaacacgagataatgttgagaagtgttttgaaga 16180210
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>dbj|AK102843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109P10, full
           insert sequence
          Length = 1101

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                       
Query: 36  acaacagaagaaggtcttgcctttgcacagcaatgtggatgcctttttctcgaaagcagt 95
           |||| ||||||||| |||||||||||| |  ||| ||||||||| ||||| || || || 
Sbjct: 627 acaagagaagaagggcttgcctttgcagaagaatctggatgcctatttcttgagagtagc 686

                                                 
Query: 96  gccaaaacaagagaaaatgtggagaaatgttttgaaga 133
           || |||||| |||| ||||| ||||| |||||||||||
Sbjct: 687 gcgaaaacacgagataatgttgagaagtgttttgaaga 724
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                            
Query: 36       acaacagaagaaggtcttgcctttgcacagcaatgtggatgcctttttctcgaaagcagt 95
                |||| ||||||||| |||||||||||| |  ||| ||||||||| ||||| || || || 
Sbjct: 16188548 acaagagaagaagggcttgcctttgcagaagaatctggatgcctatttcttgagagtagc 16188489

                                                      
Query: 96       gccaaaacaagagaaaatgtggagaaatgttttgaaga 133
                || |||||| |||| ||||| ||||| |||||||||||
Sbjct: 16188488 gcgaaaacacgagataatgttgagaagtgttttgaaga 16188451
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>gb|AY813475.1| Schistosoma japonicum SJCHGC06695 protein mRNA, complete cds
          Length = 989

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 78  ctttttctcgaaagcagtgccaaaacaagagaaaatgt 115
           |||||| | |||| ||||||||||||||| ||||||||
Sbjct: 413 ctttttgttgaaaccagtgccaaaacaagtgaaaatgt 450
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
               sequence
          Length = 1438950

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 411     ggtgtgaagggtgggggaatt 431
               |||||||||||||||||||||
Sbjct: 1096705 ggtgtgaagggtgggggaatt 1096725
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>gb|AC146238.2| Pan troglodytes BAC clone CH251-170A15 from Y, complete sequence
          Length = 169552

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    caaaacaagagaaaatgtgga 118
             |||||||||||||||||||||
Sbjct: 36518 caaaacaagagaaaatgtgga 36498
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>ref|XM_571336.1| Cryptococcus neoformans var. neoformans JEC21 phosphatidylinositol
           3-kinase TOR1 (CNF03740) partial mRNA
          Length = 7168

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 411 ggtgtgaagggtgggggaatt 431
           |||||||||||||||||||||
Sbjct: 402 ggtgtgaagggtgggggaatt 382
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>ref|XM_965991.1| PREDICTED: Tribolium castaneum similar to Cadherin-related tumor
             suppressor precursor (Fat protein) (LOC659713), mRNA
          Length = 15795

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 383   ggagggagaaataacaacttg 403
             |||||||||||||||||||||
Sbjct: 12202 ggagggagaaataacaacttg 12222
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>dbj|BS000585.1| Pan troglodytes chromosome Y clone:PTB-582H02, complete sequence
          Length = 140513

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    caaaacaagagaaaatgtgga 118
             |||||||||||||||||||||
Sbjct: 74599 caaaacaagagaaaatgtgga 74579
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 98       caaaacaagagaaaatgtgga 118
                |||||||||||||||||||||
Sbjct: 20137384 caaaacaagagaaaatgtgga 20137404
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>gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete sequence
          Length = 112428

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 91    gcagtgccaaaacaagagaaaatgtggagaaatgttttgaagagcttgt 139
             ||||||| |||||  ||| ||||||| || |||| ||||||||||||||
Sbjct: 46987 gcagtgctaaaactcgagtaaatgtgcagcaatgctttgaagagcttgt 47035
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>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete
              sequence
          Length = 200403

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 98     caaaacaagagaaaatgtgga 118
              |||||||||||||||||||||
Sbjct: 170916 caaaacaagagaaaatgtgga 170896
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>gb|AC016747.7| Homo sapiens BAC clone RP11-493E12 from 2, complete sequence
          Length = 152345

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 418   agggtgggggaattaattgac 438
             |||||||||||||||||||||
Sbjct: 38696 agggtgggggaattaattgac 38676
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>emb|AL845167.7| Mouse DNA sequence from clone RP23-36P16 on chromosome X, complete
             sequence
          Length = 162237

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 30    atggtaacaacagaagaaggtcttgcctt 58
             |||||| |||||||| |||||||||||||
Sbjct: 33391 atggtatcaacagaacaaggtcttgcctt 33363
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>ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G43890 (ATRAB18) mRNA,
           complete cds
          Length = 990

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 121 aatgttttgaagagcttgtgctaaagat 148
           ||||||||||||||||||| || |||||
Sbjct: 604 aatgttttgaagagcttgttcttaagat 631
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>gb|AC168269.3| Mus musculus BAC clone RP23-193M17 from chromosome 17, complete
             sequence
          Length = 223337

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   agtaaaggggagggagaaat 394
             ||||||||||||||||||||
Sbjct: 60481 agtaaaggggagggagaaat 60500
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>gb|AC158141.8| Mus musculus chromosome 5, clone RP23-281M20, complete sequence
          Length = 220396

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    aaaacaagagaaaatgtggagaaa 122
             ||||||||||||||| ||||||||
Sbjct: 47686 aaaacaagagaaaatatggagaaa 47709
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>ref|NM_001007117.1| Danio rerio helentron 3 helitron-like transposon
            replicase/helicase/endonuclease (hel_dr3), mRNA
          Length = 7062

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  tgaaacagaagcatgagaag 224
            ||||||||||||||||||||
Sbjct: 5567 tgaaacagaagcatgagaag 5586
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>emb|AJ784061.1| Influenza B virus (B/Jiangsu/10/03) partial HA gene for
           haemagglutinin, genomic RNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 tcttgaggttccaagtctgt 168
           ||||||||||||||||||||
Sbjct: 468 tcttgaggttccaagtctgt 449
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>emb|AL161424.13| Human DNA sequence from clone RP11-175B12 on chromosome 13 Contains
             part of the DLEU1 gene for deleted in lymphocytic leukemia
             1 (BCMS LEU1) and a novel gene, complete sequence
          Length = 126427

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   gaaataacaacttgaggttt 409
             ||||||||||||||||||||
Sbjct: 95958 gaaataacaacttgaggttt 95977
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>emb|AL136117.12| Human DNA sequence from clone CTC-1333E1 on chromosome 6, complete
             sequence
          Length = 86514

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   tggagaaatgttttgaagag 134
             ||||||||||||||||||||
Sbjct: 23889 tggagaaatgttttgaagag 23870
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>gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890)
           mRNA, complete cds
          Length = 670

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 121 aatgttttgaagagcttgtgctaaagat 148
           ||||||||||||||||||| || |||||
Sbjct: 497 aatgttttgaagagcttgttcttaagat 524
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>gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890)
           mRNA, complete cds
          Length = 864

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 121 aatgttttgaagagcttgtgctaaagat 148
           ||||||||||||||||||| || |||||
Sbjct: 568 aatgttttgaagagcttgttcttaagat 595
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 441     gtacaaatagaagagaagaa 460
               ||||||||||||||||||||
Sbjct: 2513454 gtacaaatagaagagaagaa 2513473
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 441     gtacaaatagaagagaagaa 460
               ||||||||||||||||||||
Sbjct: 1679574 gtacaaatagaagagaagaa 1679555
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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    gtacaaatagaagagaagaa 460
              ||||||||||||||||||||
Sbjct: 583663 gtacaaatagaagagaagaa 583682
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>emb|BX324181.26| Zebrafish DNA sequence from clone CH211-203O8 in linkage group 4,
             complete sequence
          Length = 141840

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   tgaaacagaagcatgagaag 224
             ||||||||||||||||||||
Sbjct: 81663 tgaaacagaagcatgagaag 81682
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>dbj|AB209933.1| Crocodylus niloticus ERa mRNA for estrogen receptor alpha, complete
           cds
          Length = 1764

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 gaggttttggtgtgaagggt 422
           ||||||||||||||||||||
Sbjct: 29  gaggttttggtgtgaagggt 10
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>gb|AC114301.2| Homo sapiens chromosome 5 clone RP11-143L23, complete sequence
          Length = 162976

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     ccaaaacaagagaaaatgtg 116
              ||||||||||||||||||||
Sbjct: 128091 ccaaaacaagagaaaatgtg 128110
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>gb|AC098567.4| Genomic sequence for Mus musculus, clone RP23-198E6, from chromosome 17,
              complete sequence
          Length = 185277

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    agtaaaggggagggagaaat 394
              ||||||||||||||||||||
Sbjct: 167798 agtaaaggggagggagaaat 167779
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>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section
              2 of 2
          Length = 440917

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    gaaataacaacttgaggttt 409
              ||||||||||||||||||||
Sbjct: 297748 gaaataacaacttgaggttt 297767
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 114     gtggagaaatgttttgaaga 133
               ||||||||||||||||||||
Sbjct: 1744708 gtggagaaatgttttgaaga 1744689
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>emb|BX296554.9| Zebrafish DNA sequence from clone DKEYP-30G1 in linkage group 5,
             complete sequence
          Length = 126703

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    ttgcacagcaatgtggatgccttt 81
             |||| |||||||||||||||||||
Sbjct: 34982 ttgctcagcaatgtggatgccttt 35005
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>gb|DQ067625.1| Paramecium octaurelia histone H4 gene, partial cds
          Length = 105

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 agaaatgttttgaagagctt 137
           ||||||||||||||||||||
Sbjct: 55  agaaatgttttgaagagctt 74
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>gb|AC026812.3| Homo sapiens chromosome 5 clone P1_420D1, complete sequence
          Length = 43369

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    ccaaaacaagagaaaatgtg 116
             ||||||||||||||||||||
Sbjct: 40267 ccaaaacaagagaaaatgtg 40248
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>gb|AC007304.11| Homo sapiens chromosome 13 clone 168l22 map 13q14, complete sequence
          Length = 120205

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  gaaataacaacttgaggttt 409
            ||||||||||||||||||||
Sbjct: 1104 gaaataacaacttgaggttt 1123
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>tpg|BK001159.1| TPA: TPA_exp: Danio rerio transposon helitron-like Hel_Dr3
            replicase/helicase/endonuclease gene, complete cds
          Length = 7062

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  tgaaacagaagcatgagaag 224
            ||||||||||||||||||||
Sbjct: 5567 tgaaacagaagcatgagaag 5586
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>gb|AC154584.3| Mus musculus BAC clone RP23-248M3 from chromosome 13, complete sequence
          Length = 166580

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     aaaacaagagaaaatgtgga 118
              ||||||||||||||||||||
Sbjct: 101762 aaaacaagagaaaatgtgga 101743
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>gb|AC084543.1|CBRG28M02 Caenorhabditis briggsae cosmid G28M02, complete sequence
          Length = 44796

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    acagaatggtaacaacagaagaag 48
             ||||||||||||||| ||||||||
Sbjct: 18951 acagaatggtaacaaaagaagaag 18974
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>gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete sequence
          Length = 884

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 121 aatgttttgaagagcttgtgctaaagat 148
           ||||||||||||||||||| || |||||
Sbjct: 607 aatgttttgaagagcttgttcttaagat 634
to top
>dbj|AB115909.1| Alligator mississippiensis ERa mRNA for estrogen receptor a,
           complete cds
          Length = 1764

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 gaggttttggtgtgaagggt 422
           ||||||||||||||||||||
Sbjct: 29  gaggttttggtgtgaagggt 10
to top
>gb|AC002427.1|AC002427 Homo sapiens BAC clone GS1-11E15 from 5q31, complete sequence
          Length = 101098

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   ccaaaacaagagaaaatgtg 116
            ||||||||||||||||||||
Sbjct: 5281 ccaaaacaagagaaaatgtg 5262
to top
>gb|AF144035.1|AF144035 Nosema locustae transcription initiation factor TFIID (TBP) gene,
           complete cds
          Length = 911

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  gaaggtcttgcctttgcaca 64
           ||||||||||||||||||||
Sbjct: 633 gaaggtcttgcctttgcaca 652
to top
>gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete sequence
          Length = 203072

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 97     ccaaaacaagagaaaatgtggaga 120
              |||||||||||||||| |||||||
Sbjct: 123779 ccaaaacaagagaaaaagtggaga 123802
to top
>gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187628

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    taaaggggagggagaaataa 396
              ||||||||||||||||||||
Sbjct: 166771 taaaggggagggagaaataa 166752
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>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete
              sequence
          Length = 218889

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     ttgcacagcaatgtggatgccttt 81
              ||||||||||||||| ||||||||
Sbjct: 112557 ttgcacagcaatgtgtatgccttt 112534
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>emb|AL928815.15| Zebrafish DNA sequence from clone BUSM1-257N2 in linkage group 2,
             complete sequence
          Length = 95293

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tgaaacagaagcatgagaag 224
             ||||||||||||||||||||
Sbjct: 29085 tgaaacagaagcatgagaag 29066
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>gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.261_A_13, complete sequence
          Length = 145618

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    agagtgggggatgctgccag 242
              ||||||||||||||||||||
Sbjct: 140058 agagtgggggatgctgccag 140077
to top
>gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, complete sequence
          Length = 178756

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    caaccaactagatctcgcaa 291
              ||||||||||||||||||||
Sbjct: 174490 caaccaactagatctcgcaa 174471
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>gb|AC130535.4| Mus musculus BAC clone RP23-326O2 from 5, complete sequence
          Length = 193752

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tgaggacagaatggtaacaa 39
              ||||||||||||||||||||
Sbjct: 121402 tgaggacagaatggtaacaa 121421
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>gb|L79911.1|ZFIER Taeniopygia guttata estrogen receptor mRNA, complete cds
          Length = 2792

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 gaggttttggtgtgaagggt 422
           ||||||||||||||||||||
Sbjct: 155 gaggttttggtgtgaagggt 136
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>gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete sequence
          Length = 115967

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  tggagaaatgttttgaagag 134
            ||||||||||||||||||||
Sbjct: 3578 tggagaaatgttttgaagag 3597
to top
>gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA, complete cds
          Length = 700

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 121 aatgttttgaagagcttgtgctaaagat 148
           ||||||||||||||||||| || |||||
Sbjct: 516 aatgttttgaagagcttgttcttaagat 543
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>gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome 1, complete sequence
          Length = 169556

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   caaccaactagatctcgcaa 291
             ||||||||||||||||||||
Sbjct: 68949 caaccaactagatctcgcaa 68968
to top
>dbj|AB055220.1| Caiman crocodilus ER mRNA for estrogen receptor, complete cds
          Length = 1764

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 gaggttttggtgtgaagggt 422
           ||||||||||||||||||||
Sbjct: 29  gaggttttggtgtgaagggt 10


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,044,099
Number of Sequences: 3902068
Number of extensions: 5044099
Number of successful extensions: 101684
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101380
Number of HSP's gapped (non-prelim): 304
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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