Clone Name | basd3p22 |
---|---|
Clone Library Name | barley_pub |
>emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on chromosome 9 Contains the 5' end of the MAPKAP1 gene for mitogen-activated protein kinase associated protein 1, a novel gene, the 5' end of the PBX3 gene for pre-B-cell leukemia transcription factor 3 and three CpG islands, complete sequence Length = 109081 Score = 42.1 bits (21), Expect = 0.21 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 caaatcatttgtgaagttgtt 42 ||||||||||||||||||||| Sbjct: 2601 caaatcatttgtgaagttgtt 2621
>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence Length = 154939 Score = 40.1 bits (20), Expect = 0.85 Identities = 26/28 (92%) Strand = Plus / Plus Query: 21 gcaaatcatttgtgaagttgttgtgtca 48 |||||||||||||| |||||| |||||| Sbjct: 124096 gcaaatcatttgtggagttgtagtgtca 124123
>gb|AC157562.8| Mus musculus chromosome 1, clone RP24-304A3, complete sequence Length = 120189 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tttgtgaagttgttgtgtc 47 ||||||||||||||||||| Sbjct: 32525 tttgtgaagttgttgtgtc 32543
>gb|AC117778.10| Mus musculus chromosome 1, clone RP24-540L1, complete sequence Length = 168025 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 tttagaagtaactgcatta 70 ||||||||||||||||||| Sbjct: 58431 tttagaagtaactgcatta 58413
>gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosome 8, complete sequence Length = 199464 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 tcctttagaagtaactgca 67 ||||||||||||||||||| Sbjct: 156942 tcctttagaagtaactgca 156924
>gb|AC146163.3| Pan troglodytes BAC clone RP43-24D16 from 7, complete sequence Length = 162475 Score = 38.2 bits (19), Expect = 3.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 tcatcctttagaagtaactgcat 68 |||||||||| |||||||||||| Sbjct: 135494 tcatcctttaaaagtaactgcat 135472
>gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3 of 3 of the complete sequence Length = 209806 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 tcatcctttagaagtaact 64 ||||||||||||||||||| Sbjct: 166982 tcatcctttagaagtaact 167000
>gb|AC166548.2| Nectria haematococca clone JGIAYWI-9B5, complete sequence Length = 41007 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aacatggcaaatcatttgt 33 ||||||||||||||||||| Sbjct: 2393 aacatggcaaatcatttgt 2411
>emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in linkage group 8, complete sequence Length = 215608 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 tcatttgtgaagttgttgt 44 ||||||||||||||||||| Sbjct: 179103 tcatttgtgaagttgttgt 179085
>emb|AL512629.7| Human DNA sequence from clone RP11-564N10 on chromosome 13 Contains the 5' end of the FGF14 gene for fibroblast growth factor 14, a lipoyltransferase (LOC51601) pseudogene and a CpG island, complete sequence Length = 188696 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 tcatcctttagaagtaact 64 ||||||||||||||||||| Sbjct: 17877 tcatcctttagaagtaact 17895
>gb|AF503504.2| Photorhabdus luminescens MtaD-like protein gene, partial cds; putative inner membrane protein, putative efflux protein, MhpE-like protein, hypothetical protein, DlpA-like protein, CinA-like protein, DlpA-like protein; complete cds; mcf pathogenicity island, complete sequence; tRNA-Phe gene, complete sequence; and TetR-family-like regulatory protein (tetR) gene, partial cds Length = 35876 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 caaatcatttgtgaagttg 40 ||||||||||||||||||| Sbjct: 8455 caaatcatttgtgaagttg 8473
>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence Length = 206737 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 caaacatggcaaatcattt 31 ||||||||||||||||||| Sbjct: 42845 caaacatggcaaatcattt 42863
>gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, complete sequence Length = 184644 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 atggcaaatcatttgtgaa 36 ||||||||||||||||||| Sbjct: 171312 atggcaaatcatttgtgaa 171294 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 722,820 Number of Sequences: 3902068 Number of extensions: 722820 Number of successful extensions: 47485 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47466 Number of HSP's gapped (non-prelim): 19 length of query: 81 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 60 effective length of database: 17,151,101,840 effective search space: 1029066110400 effective search space used: 1029066110400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)