Clone Name | basd3p19 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472247.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1278 Score = 392 bits (198), Expect = e-106 Identities = 294/326 (90%) Strand = Plus / Plus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 60 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 61 tgggaggtggcggagccgcagctgtcgccgtccgagaagctcaactcctgcttcgaggac 120 Query: 271 atccccgtcgccgccttcccccgcaaccacccctcgcaggtcatcgagataccttcggat 330 ||| |||||||| ||||||||||| || |||||| || |||||||||||||| || Sbjct: 121 atcgccgtcgcctccttcccccgcccccttggctcgcaagtaatcgagataccttcaaat 180 Query: 331 gccagccttgctgatactgttgagacattatccaaaaataaaattttgagtgcacccata 390 || || || |||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct: 181 gctagtctggctgatactgttgaaatattatccaaaaacaaaattttgagtgcacccata 240 Query: 391 agaaacgtcgatgctccagaggatgctacttggatagacaaatacatcggtattgtggaa 450 ||||| || ||||||||||| ||||||| |||||| ||||||||||| || ||||||||| Sbjct: 241 agaaatgttgatgctccagaagatgctagttggattgacaaatacattggcattgtggaa 300 Query: 451 tttgctggtattgcaatgtggttgct 476 |||||||||||||| ||||||||||| Sbjct: 301 tttgctggtattgctatgtggttgct 326
>dbj|AK101795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066B14, full insert sequence Length = 1692 Score = 392 bits (198), Expect = e-106 Identities = 294/326 (90%) Strand = Plus / Plus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 202 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 261 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 262 tgggaggtggcggagccgcagctgtcgccgtccgagaagctcaactcctgcttcgaggac 321 Query: 271 atccccgtcgccgccttcccccgcaaccacccctcgcaggtcatcgagataccttcggat 330 ||| |||||||| ||||||||||| || |||||| || |||||||||||||| || Sbjct: 322 atcgccgtcgcctccttcccccgcccccttggctcgcaagtaatcgagataccttcaaat 381 Query: 331 gccagccttgctgatactgttgagacattatccaaaaataaaattttgagtgcacccata 390 || || || |||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct: 382 gctagtctggctgatactgttgaaatattatccaaaaacaaaattttgagtgcacccata 441 Query: 391 agaaacgtcgatgctccagaggatgctacttggatagacaaatacatcggtattgtggaa 450 ||||| || ||||||||||| ||||||| |||||| ||||||||||| || ||||||||| Sbjct: 442 agaaatgttgatgctccagaagatgctagttggattgacaaatacattggcattgtggaa 501 Query: 451 tttgctggtattgcaatgtggttgct 476 |||||||||||||| ||||||||||| Sbjct: 502 tttgctggtattgctatgtggttgct 527
>dbj|AK071912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063J16, full insert sequence Length = 1487 Score = 392 bits (198), Expect = e-106 Identities = 294/326 (90%) Strand = Plus / Plus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 86 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 145 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 146 tgggaggtggcggagccgcagctgtcgccgtccgagaagctcaactcctgcttcgaggac 205 Query: 271 atccccgtcgccgccttcccccgcaaccacccctcgcaggtcatcgagataccttcggat 330 ||| |||||||| ||||||||||| || |||||| || |||||||||||||| || Sbjct: 206 atcgccgtcgcctccttcccccgcccccttggctcgcaagtaatcgagataccttcaaat 265 Query: 331 gccagccttgctgatactgttgagacattatccaaaaataaaattttgagtgcacccata 390 || || || |||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct: 266 gctagtctggctgatactgttgaaatattatccaaaaacaaaattttgagtgcacccata 325 Query: 391 agaaacgtcgatgctccagaggatgctacttggatagacaaatacatcggtattgtggaa 450 ||||| || ||||||||||| ||||||| |||||| ||||||||||| || ||||||||| Sbjct: 326 agaaatgttgatgctccagaagatgctagttggattgacaaatacattggcattgtggaa 385 Query: 451 tttgctggtattgcaatgtggttgct 476 |||||||||||||| ||||||||||| Sbjct: 386 tttgctggtattgctatgtggttgct 411
>gb|AY105248.1| Zea mays PCO134665 mRNA sequence Length = 1817 Score = 357 bits (180), Expect = 3e-95 Identities = 288/324 (88%) Strand = Plus / Plus Query: 153 ggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctgtg 212 ||||| ||| |||||||| ||||| |||||||||||||| ||||||||||||||||| || Sbjct: 253 ggagatggagagcccgcgcagccccgaggcggagatcggccaccgggtggaggacctctg 312 Query: 213 ggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggacat 272 |||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 313 ggaggtggcggagccgcagctctcgccgtcggagaagctcaactcctgcttcgaggacat 372 Query: 273 ccccgtcgccgccttcccccgcaaccacccctcgcaggtcatcgagataccttcggatgc 332 ||||||||| ||||||| |||| ||||| || || ||||| ||||| ||||| ||||| Sbjct: 373 ccccgtcgcgtccttcccgcgcacgcacccgtcccaagtcattgagattccttcagatgc 432 Query: 333 cagccttgctgatactgttgagacattatccaaaaataaaattttgagtgcacccataag 392 || |||||||| ||||| || | |||||||||||| ||||| ||||||||||||||||| Sbjct: 433 aagtcttgctgaaactgtagaaatattatccaaaaacaaaatcttgagtgcacccataag 492 Query: 393 aaacgtcgatgctccagaggatgctacttggatagacaaatacatcggtattgtggaatt 452 ||| || || |||||||| ||||||| |||||| |||||||||||||| ||||||||||| Sbjct: 493 aaatgttgaggctccagaagatgctagttggatggacaaatacatcggcattgtggaatt 552 Query: 453 tgctggtattgcaatgtggttgct 476 |||||||||||| ||||||||||| Sbjct: 553 tgctggtattgccatgtggttgct 576
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 222 bits (112), Expect = 1e-54 Identities = 136/144 (94%) Strand = Plus / Minus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 18762720 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 18762661 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 18762660 tgggaggtggcggagccgcagctgtcgccgtccgagaagctcaactcctgcttcgaggac 18762601 Query: 271 atccccgtcgccgccttcccccgc 294 ||| |||||||| ||||||||||| Sbjct: 18762600 atcgccgtcgcctccttcccccgc 18762577 Score = 214 bits (108), Expect = 3e-52 Identities = 135/144 (93%) Strand = Plus / Minus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 18604963 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 18604904 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 18604903 tgggaggtggcggagccgcagctgtcaccgtccgagaagctcaactcctgcttcgaggac 18604844 Query: 271 atccccgtcgccgccttcccccgc 294 ||| |||||||| |||||| |||| Sbjct: 18604843 atcaccgtcgcctccttccaccgc 18604820 Score = 202 bits (102), Expect = 1e-48 Identities = 156/174 (89%) Strand = Plus / Minus Query: 313 atcgagataccttcggatgccagccttgctgatactgttgagacattatccaaaaataaa 372 |||||||||||||| |||| || || |||||||||||||| | |||||||||||| ||| Sbjct: 18760473 atcgagataccttcaaatgctagtctggctgatactgttgaaatattatccaaaaacaaa 18760414 Query: 373 attttgagtgcacccataagaaacgtcgatgctccagaggatgctacttggatagacaaa 432 ||||||||||||||||||||||| || ||||||||||| ||||||| |||||| |||||| Sbjct: 18760413 attttgagtgcacccataagaaatgttgatgctccagaagatgctagttggattgacaaa 18760354 Query: 433 tacatcggtattgtggaatttgctggtattgcaatgtggttgcttcatcaggtt 486 ||||| || ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 18760353 tacattggcattgtggaatttgctggtattgctatgtggttgctctatcaggtt 18760300
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence Length = 160456 Score = 222 bits (112), Expect = 1e-54 Identities = 136/144 (94%) Strand = Plus / Minus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 111883 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 111824 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 111823 tgggaggtggcggagccgcagctgtcgccgtccgagaagctcaactcctgcttcgaggac 111764 Query: 271 atccccgtcgccgccttcccccgc 294 ||| |||||||| ||||||||||| Sbjct: 111763 atcgccgtcgcctccttcccccgc 111740 Score = 202 bits (102), Expect = 1e-48 Identities = 156/174 (89%) Strand = Plus / Minus Query: 313 atcgagataccttcggatgccagccttgctgatactgttgagacattatccaaaaataaa 372 |||||||||||||| |||| || || |||||||||||||| | |||||||||||| ||| Sbjct: 109636 atcgagataccttcaaatgctagtctggctgatactgttgaaatattatccaaaaacaaa 109577 Query: 373 attttgagtgcacccataagaaacgtcgatgctccagaggatgctacttggatagacaaa 432 ||||||||||||||||||||||| || ||||||||||| ||||||| |||||| |||||| Sbjct: 109576 attttgagtgcacccataagaaatgttgatgctccagaagatgctagttggattgacaaa 109517 Query: 433 tacatcggtattgtggaatttgctggtattgcaatgtggttgcttcatcaggtt 486 ||||| || ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 109516 tacattggcattgtggaatttgctggtattgctatgtggttgctctatcaggtt 109463
>ref|XM_472229.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 600 Score = 214 bits (108), Expect = 3e-52 Identities = 135/144 (93%) Strand = Plus / Plus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 60 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 61 tgggaggtggcggagccgcagctgtcaccgtccgagaagctcaactcctgcttcgaggac 120 Query: 271 atccccgtcgccgccttcccccgc 294 ||| |||||||| |||||| |||| Sbjct: 121 atcaccgtcgcctccttccaccgc 144
>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence Length = 130910 Score = 214 bits (108), Expect = 3e-52 Identities = 135/144 (93%) Strand = Plus / Minus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 72829 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 72770 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 72769 tgggaggtggcggagccgcagctgtcaccgtccgagaagctcaactcctgcttcgaggac 72710 Query: 271 atccccgtcgccgccttcccccgc 294 ||| |||||||| |||||| |||| Sbjct: 72709 atcaccgtcgcctccttccaccgc 72686
>dbj|AK103261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124D08, full insert sequence Length = 2161 Score = 214 bits (108), Expect = 3e-52 Identities = 135/144 (93%) Strand = Plus / Plus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 907 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 966 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 967 tgggaggtggcggagccgcagctgtcaccgtccgagaagctcaactcctgcttcgaggac 1026 Query: 271 atccccgtcgccgccttcccccgc 294 ||| |||||||| |||||| |||| Sbjct: 1027 atcaccgtcgcctccttccaccgc 1050
>dbj|AK069457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019M11, full insert sequence Length = 1508 Score = 214 bits (108), Expect = 3e-52 Identities = 135/144 (93%) Strand = Plus / Plus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 912 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 971 Query: 211 tgggaggtggcgcagccgcagctgtccccgtcggagaagctcaactcctgcttcgaggac 270 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 972 tgggaggtggcggagccgcagctgtcaccgtccgagaagctcaactcctgcttcgaggac 1031 Query: 271 atccccgtcgccgccttcccccgc 294 ||| |||||||| |||||| |||| Sbjct: 1032 atcaccgtcgcctccttccaccgc 1055
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 170 bits (86), Expect = 4e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 174 cccggaggcggagatcgggcaccgggtggaggacctgtgggaggtggcgcagccgcagct 233 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 9321285 cccggaggcggagatcgggcacagggtggaggacctgtgggaggtggcagagccgcagct 9321344 Query: 234 gtccccgtcggagaagctcaactcctgcttcgaggacatccccgtcgccgccttcccc 291 ||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 9321345 gtcaccgtccgagaagctcaactcctgcttcgaggacatcgtcgtcgcctccttcccc 9321402 Score = 123 bits (62), Expect = 8e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 174 cccggaggcggagatcgggcaccgggtggaggacctgtgggaggtggcgcagccgcagct 233 |||| |||||||||||| || ||||||||||||| ||||||||||| |||||||||| Sbjct: 9327219 cccgtaggcggagatcgagcgtagggtggaggacctaagggaggtggcggagccgcagct 9327278 Query: 234 gtccccgtcggagaagctcaactcctgcttcgaggacatccccgtcgccgccttcccc 291 ||| ||||| |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 9327279 gtcaccgtccaagaagctcaactcctgcttcaaggacatcgccgtcgcctccttcccc 9327336
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 170 bits (86), Expect = 4e-39 Identities = 110/118 (93%) Strand = Plus / Plus Query: 174 cccggaggcggagatcgggcaccgggtggaggacctgtgggaggtggcgcagccgcagct 233 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 9321170 cccggaggcggagatcgggcacagggtggaggacctgtgggaggtggcagagccgcagct 9321229 Query: 234 gtccccgtcggagaagctcaactcctgcttcgaggacatccccgtcgccgccttcccc 291 ||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 9321230 gtcaccgtccgagaagctcaactcctgcttcgaggacatcgtcgtcgcctccttcccc 9321287 Score = 123 bits (62), Expect = 8e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 174 cccggaggcggagatcgggcaccgggtggaggacctgtgggaggtggcgcagccgcagct 233 |||| |||||||||||| || ||||||||||||| ||||||||||| |||||||||| Sbjct: 9327104 cccgtaggcggagatcgagcgtagggtggaggacctaagggaggtggcggagccgcagct 9327163 Query: 234 gtccccgtcggagaagctcaactcctgcttcgaggacatccccgtcgccgccttcccc 291 ||| ||||| |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 9327164 gtcaccgtccaagaagctcaactcctgcttcaaggacatcgccgtcgcctccttcccc 9327221
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 190718 Score = 170 bits (86), Expect = 4e-39 Identities = 110/118 (93%) Strand = Plus / Minus Query: 174 cccggaggcggagatcgggcaccgggtggaggacctgtgggaggtggcgcagccgcagct 233 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 117770 cccggaggcggagatcgggcacagggtggaggacctgtgggaggtggcagagccgcagct 117711 Query: 234 gtccccgtcggagaagctcaactcctgcttcgaggacatccccgtcgccgccttcccc 291 ||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 117710 gtcaccgtccgagaagctcaactcctgcttcgaggacatcgtcgtcgcctccttcccc 117653 Score = 123 bits (62), Expect = 8e-25 Identities = 104/118 (88%) Strand = Plus / Minus Query: 174 cccggaggcggagatcgggcaccgggtggaggacctgtgggaggtggcgcagccgcagct 233 |||| |||||||||||| || ||||||||||||| ||||||||||| |||||||||| Sbjct: 111836 cccgtaggcggagatcgagcgtagggtggaggacctaagggaggtggcggagccgcagct 111777 Query: 234 gtccccgtcggagaagctcaactcctgcttcgaggacatccccgtcgccgccttcccc 291 ||| ||||| |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 111776 gtcaccgtccaagaagctcaactcctgcttcaaggacatcgccgtcgcctccttcccc 111719
>gb|AY023103.1| Oryza sativa microsatellite MRG5428 containing (GAG)X9, closest to marker RM185, genomic sequence Length = 227 Score = 143 bits (72), Expect = 8e-31 Identities = 87/92 (94%) Strand = Plus / Plus Query: 151 atggagacggacagcccgcggagcccggaggcggagatcgggcaccgggtggaggacctg 210 ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 135 atggagatggagagcccgcggagcccggaggcggagatcgggcacagggtggaggacctg 194 Query: 211 tgggaggtggcgcagccgcagctgtccccgtc 242 |||||||||||| ||||||||||||| ||||| Sbjct: 195 tgggaggtggcggagccgcagctgtcgccgtc 226
>dbj|AK104588.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G07, full insert sequence Length = 1239 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 400 gatgctccagaggatgctacttggatagacaaatacatcggtattgtggaatttgctggt 459 ||||||||||| ||||||| |||||| ||||||||||| || |||||||||||||||||| Sbjct: 4 gatgctccagaagatgctagttggattgacaaatacattggcattgtggaatttgctggt 63 Query: 460 attgcaatgtggttgct 476 ||||| ||||||||||| Sbjct: 64 attgctatgtggttgct 80
>dbj|AK104732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C08, full insert sequence Length = 1239 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 400 gatgctccagaggatgctacttggatagacaaatacatcggtattgtggaatttgctggt 459 ||||||||||| ||||||| |||||| ||||||||||| || |||||||||||||||||| Sbjct: 4 gatgctccagaagatgctagttggattgacaaatacattggcattgtggaatttgctggt 63 Query: 460 attgcaatgtggttgct 476 ||||| ||||||||||| Sbjct: 64 attgctatgtggttgct 80
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 170 ggagcccggaggcggagatcggg 192 ||||||||||||||||||||||| Sbjct: 32566 ggagcccggaggcggagatcggg 32544
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 620 caaattaattccatttttacata 642 ||||||||||||||||||||||| Sbjct: 18565728 caaattaattccatttttacata 18565706 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 tttttatatagctagataga 536 |||||||||||||||||||| Sbjct: 4496615 tttttatatagctagataga 4496596
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 170 ggagcccggaggcggagatcggg 192 ||||||||||||||||||||||| Sbjct: 40233614 ggagcccggaggcggagatcggg 40233592
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 170 ggagcccggaggcggagatcggg 192 ||||||||||||||||||||||| Sbjct: 99392 ggagcccggaggcggagatcggg 99370
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 170 ggagcccggaggcggagatcggg 192 ||||||||||||||||||||||| Sbjct: 24964 ggagcccggaggcggagatcggg 24942
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 620 caaattaattccatttttacata 642 ||||||||||||||||||||||| Sbjct: 106867 caaattaattccatttttacata 106845
>dbj|AK105517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F06, full insert sequence Length = 1473 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 170 ggagcccggaggcggagatcggg 192 ||||||||||||||||||||||| Sbjct: 100 ggagcccggaggcggagatcggg 122
>gb|U29381.1| Caenorhabditis elegans cosmid F35D11, complete sequence Length = 45211 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 363 caaaaataaaattttgagtgca 384 |||||||||||||||||||||| Sbjct: 15893 caaaaataaaattttgagtgca 15872
>gb|AC084346.3| Homo sapiens chromosome 8, clone RP3-388N13, complete sequence Length = 128437 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 615 taaaccaaattaattccatttt 636 |||||||||||||||||||||| Sbjct: 89240 taaaccaaattaattccatttt 89219
>dbj|AP004282.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1165G2 Length = 250681 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 615 taaaccaaattaattccatttt 636 |||||||||||||||||||||| Sbjct: 136525 taaaccaaattaattccatttt 136546
>ref|NM_114711.1| Arabidopsis thaliana unknown protein AT3G48530 mRNA, complete cds Length = 1573 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 455 tacatcggtattgtggaattt 475
>gb|AF529435.1| Bombus morio 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 404 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 attatccaaaaataaaatttt 377 ||||||||||||||||||||| Sbjct: 280 attatccaaaaataaaatttt 260
>emb|AL109752.14|HSJ321O10 Human DNA sequence from clone RP1-321O10 on chromosome Xq13.1-21.2 Contains the 5' end of the DACH2 gene for dachshund homolog 2 (Drosophila), aeukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene and a CpG island, complete sequence Length = 79562 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 gccttcccccgcaaccacccc 303 ||||||||||||||||||||| Sbjct: 29568 gccttcccccgcaaccacccc 29588
>emb|AL031114.2|HS468H17 Human DNA sequence from clone RP3-468H17 on chromosome Xq21.3-22.1, complete sequence Length = 115743 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 ccaaaaataaaattttgagtg 382 ||||||||||||||||||||| Sbjct: 41189 ccaaaaataaaattttgagtg 41169
>emb|AL133315.1|ATT8P19 Arabidopsis thaliana DNA chromosome 3, BAC clone T8P19 Length = 96679 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 23823 tacatcggtattgtggaattt 23843
>gb|AY081464.1| Arabidopsis thaliana putative protein (At3g48530) mRNA, complete cds Length = 1343 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 328 tacatcggtattgtggaattt 348
>gb|AY042839.1| Arabidopsis thaliana putative protein (T8P19.40) mRNA, complete cds Length = 1524 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 420 tacatcggtattgtggaattt 440
>emb|BX823740.1|CNS0A5CK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS71ZB01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1533 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 445 tacatcggtattgtggaattt 465
>emb|BX823234.1|CNS0A5EX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS15ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1466 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 398 tacatcggtattgtggaattt 418
>emb|BX823235.1|CNS0A4NM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS15ZA03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1436 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 398 tacatcggtattgtggaattt 418
>gb|AY087317.1| Arabidopsis thaliana clone 34151 mRNA, complete sequence Length = 1576 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 455 tacatcggtattgtggaattt 475
>emb|AJ132317.1|ATH132317 Arabidopsis thaliana mRNA for AKIN gamma Length = 1556 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tacatcggtattgtggaattt 453 ||||||||||||||||||||| Sbjct: 438 tacatcggtattgtggaattt 458
>gb|AY761190.1| Arabidopsis thaliana type II inositol polyphosphate 5-phosphatase (FRA3) gene, complete cds Length = 6343 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 tctaaaccaaattaattcca 632 |||||||||||||||||||| Sbjct: 5145 tctaaaccaaattaattcca 5126
>gb|AC113586.14| Mus musculus chromosome 8, clone RP23-17D24, complete sequence Length = 206445 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ttacagaggtgttgggagaa 76 |||||||||||||||||||| Sbjct: 115755 ttacagaggtgttgggagaa 115736
>gb|AC159428.1| Trypanosoma brucei chromosome 8 clone RPCI93-28A12, complete sequence Length = 154096 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cacgaggccgcaatccgcaa 26 |||||||||||||||||||| Sbjct: 62586 cacgaggccgcaatccgcaa 62605
>gb|BT020053.1| Homo sapiens three prime repair exonuclease 1 mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 149 ggtggaggaactgtgggaggtggc 126
>gb|BT020052.1| Homo sapiens three prime repair exonuclease 1 mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 149 ggtggaggaactgtgggaggtggc 126
>gb|BT020051.1| Synthetic construct Homo sapiens three prime repair exonuclease 1 mRNA, partial cds Length = 915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 149 ggtggaggaactgtgggaggtggc 126
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tattgtggaatttgctggta 460 |||||||||||||||||||| Sbjct: 1265893 tattgtggaatttgctggta 1265874
>gb|AC159456.1| Trypanosoma brucei chromosome 8 clone RPCI93-6H23, complete sequence Length = 169646 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cacgaggccgcaatccgcaa 26 |||||||||||||||||||| Sbjct: 145885 cacgaggccgcaatccgcaa 145904
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cacgaggccgcaatccgcaa 26 |||||||||||||||||||| Sbjct: 2389680 cacgaggccgcaatccgcaa 2389699
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 agctagatagatttgttcac 545 |||||||||||||||||||| Sbjct: 157242 agctagatagatttgttcac 157261
>gb|BC068806.1| Xenopus laevis alpha3-fucosyltransferase, mRNA (cDNA clone MGC:81396 IMAGE:6634880), complete cds Length = 2998 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 aacatgttgatatgtttgca 590 |||||||||||||||||||| Sbjct: 2211 aacatgttgatatgtttgca 2192
>gb|BC023630.1| Homo sapiens three prime repair exonuclease 1, transcript variant 1, mRNA (cDNA clone IMAGE:4843138), complete cds Length = 1449 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 561 ggtggaggaactgtgggaggtggc 538
>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060K21, complete sequence Length = 153973 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 594 ttgatcaatattgcactcat 613 |||||||||||||||||||| Sbjct: 36744 ttgatcaatattgcactcat 36763
>gb|AY247269.1| Medicago truncatula AKIN gamma mRNA, complete cds Length = 1416 Score = 40.1 bits (20), Expect = 9.1 Identities = 44/52 (84%) Strand = Plus / Plus Query: 412 gatgctacttggatagacaaatacatcggtattgtggaatttgctggtattg 463 |||||||||||||| || | ||||||||| || || || |||||||| |||| Sbjct: 299 gatgctacttggattgatagatacatcggaatagttgagtttgctggaattg 350
>ref|XM_975293.1| PREDICTED: Mus musculus hypothetical LOC624480 (LOC624480), mRNA Length = 369 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ggagacggacagcccgcggagcccggag 180 |||| |||||||||||||| |||||||| Sbjct: 85 ggaggcggacagcccgcggggcccggag 112
>ref|XM_919517.1| PREDICTED: Mus musculus hypothetical LOC631869 (LOC631869), mRNA Length = 369 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ggagacggacagcccgcggagcccggag 180 |||| |||||||||||||| |||||||| Sbjct: 85 ggaggcggacagcccgcggggcccggag 112
>ref|XM_898368.1| PREDICTED: Mus musculus hypothetical LOC624480 (LOC624480), mRNA Length = 369 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ggagacggacagcccgcggagcccggag 180 |||| |||||||||||||| |||||||| Sbjct: 85 ggaggcggacagcccgcggggcccggag 112
>ref|XM_819962.1| Trypanosoma brucei TREU927 clone RPCI93-6H23 hypothetical protein (Tb927.8.8070) partial mRNA Length = 1653 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cacgaggccgcaatccgcaa 26 |||||||||||||||||||| Sbjct: 885 cacgaggccgcaatccgcaa 904
>emb|CR387983.8| Zebrafish DNA sequence from clone DKEY-90D6 in linkage group 21, complete sequence Length = 131428 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 agaagctcaactcctgcttc 264 |||||||||||||||||||| Sbjct: 4765 agaagctcaactcctgcttc 4784
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 622 aattaattccatttttacat 641 |||||||||||||||||||| Sbjct: 59231 aattaattccatttttacat 59212
>emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 in linkage group 2, complete sequence Length = 176623 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 caaaaataaaattttgagtg 382 |||||||||||||||||||| Sbjct: 147919 caaaaataaaattttgagtg 147900
>emb|AJ243797.1|HSA243797 Homo sapiens mRNA for deoxyribonuclease III (drn3 gene) Length = 1239 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 405 ggtggaggaactgtgggaggtggc 382
>ref|NM_033629.1| Homo sapiens three prime repair exonuclease 1 (TREX1), transcript variant 4, mRNA Length = 1915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 1066 ggtggaggaactgtgggaggtggc 1043
>ref|NM_016381.2| Homo sapiens three prime repair exonuclease 1 (TREX1), transcript variant 1, mRNA Length = 2216 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 1386 ggtggaggaactgtgggaggtggc 1363
>ref|NM_033628.2| Homo sapiens three prime repair exonuclease 1 (TREX1), transcript variant 3, mRNA Length = 3623 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 2774 ggtggaggaactgtgggaggtggc 2751
>ref|NM_033627.3| Homo sapiens three prime repair exonuclease 1 (TREX1), transcript variant 2, mRNA Length = 4013 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 3164 ggtggaggaactgtgggaggtggc 3141
>gb|AF529440.1| Bombus transversalis 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 406 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 attatccaaaaataaaattt 376 |||||||||||||||||||| Sbjct: 280 attatccaaaaataaaattt 261
>gb|AF529430.1| Bombus dahlbomii 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 410 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 attatccaaaaataaaattt 376 |||||||||||||||||||| Sbjct: 284 attatccaaaaataaaattt 265
>gb|AF529429.1| Bombus californicus 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 409 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 attatccaaaaataaaattt 376 |||||||||||||||||||| Sbjct: 283 attatccaaaaataaaattt 264
>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3' end of a novel gene, and a novel pseudogene, complete sequence Length = 131366 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 tttcctttttatatagctagatag 535 |||||||||||||| ||||||||| Sbjct: 72144 tttcctttttatatggctagatag 72167
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 gagaagctcaactcctgcttcgag 267 |||||||||||||||| ||||||| Sbjct: 72067 gagaagctcaactccttcttcgag 72044
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 agctagatagatttgttcac 545 |||||||||||||||||||| Sbjct: 392184 agctagatagatttgttcac 392203
>emb|BX914223.9| Zebrafish DNA sequence from clone DKEY-98M24 in linkage group 14, complete sequence Length = 252048 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 ttcatcaggtttacatcctc 495 |||||||||||||||||||| Sbjct: 183779 ttcatcaggtttacatcctc 183798
>gb|BC019863.1| Homo sapiens, clone IMAGE:5109215, mRNA Length = 1128 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 294 ggtggaggaactgtgggaggtggc 271
>emb|BX957332.10| Zebrafish DNA sequence from clone DKEY-170K13 in linkage group 19, complete sequence Length = 141125 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 gtcaaaacatgttgatatgt 585 |||||||||||||||||||| Sbjct: 96731 gtcaaaacatgttgatatgt 96750
>gb|AC117945.2| Homo sapiens chromosome 1 clone RP4-614N24, complete sequence Length = 160557 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 gggtggaggacctgtgggaggtgg 220 |||||| ||||||||||||||||| Sbjct: 27365 gggtgggggacctgtgggaggtgg 27388
>emb|AL137745.1|HSM802342 Homo sapiens mRNA; cDNA DKFZp434J0310 (from clone DKFZp434J0310) Length = 2145 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 1315 ggtggaggaactgtgggaggtggc 1292
>emb|BX005140.18| Zebrafish DNA sequence from clone CH211-11F22, complete sequence Length = 177312 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 agaagctcaactcctgcttc 264 |||||||||||||||||||| Sbjct: 152750 agaagctcaactcctgcttc 152731
>gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, complete sequence Length = 155470 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 126204 ggtggaggaactgtgggaggtggc 126181
>gb|AC095055.3| Homo sapiens BAC clone RP11-372K14 from 4, complete sequence Length = 183478 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gggggagaggagatggagac 158 |||||||||||||||||||| Sbjct: 139746 gggggagaggagatggagac 139765
>gb|AF483777.1| Homo sapiens three prime repair exonuclease 1 (TREX1) gene, complete cds Length = 5881 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 2430 ggtggaggaactgtgggaggtggc 2407
>gb|AC015766.9| Homo sapiens chromosome 18, clone RP11-1P16, complete sequence Length = 153781 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 638 acatacaagatcacaatggtagat 661 |||| ||||||||||||||||||| Sbjct: 87699 acatccaagatcacaatggtagat 87722
>gb|AF151105.3|AF151105 Homo sapiens 3'-5' exonuclease TREX1 mRNA, complete cds Length = 1821 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 972 ggtggaggaactgtgggaggtggc 949
>emb|CR457119.1| Homo sapiens full open reading frame cDNA clone RZPDo834B0212D for gene TREX1, three prime repair exonuclease 1; complete cds, incl. stopcodon Length = 915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 149 ggtggaggaactgtgggaggtggc 126
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 594 ttgatcaatattgcactcat 613 |||||||||||||||||||| Sbjct: 21154585 ttgatcaatattgcactcat 21154604
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 agctagatagatttgttcac 545 |||||||||||||||||||| Sbjct: 392184 agctagatagatttgttcac 392203
>gb|AC068490.4| Homo sapiens BAC clone RP11-789K7 from 2, complete sequence Length = 156900 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 atcctccctctcttcagttc 509 |||||||||||||||||||| Sbjct: 76639 atcctccctctcttcagttc 76658
>gb|AF319569.1|AF319569 Homo sapiens clone T1P1 3'-5' exonuclease TREX1 (TREX1) mRNA, complete cds Length = 1915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 1066 ggtggaggaactgtgggaggtggc 1043
>gb|AF319568.1|AF319568 Homo sapiens clone T1P2 3'-5' exonuclease TREX1-like protein (TREX1) mRNA, complete cds Length = 2235 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 1386 ggtggaggaactgtgggaggtggc 1363
>gb|AF319567.1|AF319567 Homo sapiens clone T1P3 3'-5' exonuclease TREX1 (TREX1) mRNA, complete cds Length = 3623 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 2774 ggtggaggaactgtgggaggtggc 2751
>gb|AF319566.1|AF319566 Homo sapiens clone T1P4 3'-5' exonuclease TREX1 (TREX1) mRNA, complete cds Length = 3981 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 3132 ggtggaggaactgtgggaggtggc 3109
>gb|AC098820.3| Homo sapiens BAC clone RP11-253L15 from 2, complete sequence Length = 155669 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 gtgttgggagaatccaggag 84 |||||||||||||||||||| Sbjct: 32549 gtgttgggagaatccaggag 32530
>gb|AC004253.2| Homo sapiens chromosome 17, clone CTC-542B22, complete sequence Length = 130724 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cttcccccgcaaccacccct 304 |||||||||||||||||||| Sbjct: 85610 cttcccccgcaaccacccct 85629
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gcggagcccggaggcggaga 187 |||||||||||||||||||| Sbjct: 3396032 gcggagcccggaggcggaga 3396051
>gb|AF170724.1|AF170724 Homo sapiens cell cycle checkpoint protein CHFR mRNA, complete cds Length = 2679 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 attcggcacgaggccgcaat 20 |||||||||||||||||||| Sbjct: 5 attcggcacgaggccgcaat 24
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 accgggtggaggacctgtgggagg 217 |||||||||||| ||||||||||| Sbjct: 1605583 accgggtggaggccctgtgggagg 1605606
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 tttttatatagctagataga 536 |||||||||||||||||||| Sbjct: 31994 tttttatatagctagataga 31975
>gb|AY888559.1| Synthetic construct Homo sapiens clone FLH008934.01X three prime repair exonuclease 1 (TREX1) mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 149 ggtggaggaactgtgggaggtggc 126
>gb|AY888558.1| Synthetic construct Homo sapiens clone FLH008933.01X three prime repair exonuclease 1 (TREX1) mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 149 ggtggaggaactgtgggaggtggc 126
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 622 aattaattccatttttacat 641 |||||||||||||||||||| Sbjct: 144987 aattaattccatttttacat 144968
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 acattatccaaaaataaaat 374 |||||||||||||||||||| Sbjct: 1164458 acattatccaaaaataaaat 1164477
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 acattatccaaaaataaaat 374 |||||||||||||||||||| Sbjct: 996893 acattatccaaaaataaaat 996874
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tattgtggaatttgctggta 460 |||||||||||||||||||| Sbjct: 1233877 tattgtggaatttgctggta 1233858
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 agctagatagatttgttcac 545 |||||||||||||||||||| Sbjct: 392181 agctagatagatttgttcac 392200
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 594 ttgatcaatattgcactcat 613 |||||||||||||||||||| Sbjct: 21464826 ttgatcaatattgcactcat 21464845
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 109560 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 tctaaaccaaattaattcca 632 |||||||||||||||||||| Sbjct: 57866 tctaaaccaaattaattcca 57885
>gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, complete sequence Length = 177231 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggaggacctgtgggaggtggc 221 ||||||||| |||||||||||||| Sbjct: 80512 ggtggaggaactgtgggaggtggc 80489
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcccggaggcggagatcggg 192 |||||||||||||||||||| Sbjct: 3009384 gcccggaggcggagatcggg 3009365
>emb|AL591390.8| Mouse DNA sequence from clone RP23-355L10 on chromosome 11, complete sequence Length = 186134 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gggggagaggagatggagac 158 |||||||||||||||||||| Sbjct: 114097 gggggagaggagatggagac 114116
>emb|AL592169.14| Mouse DNA sequence from clone RP23-305P10 on chromosome 15, complete sequence Length = 161985 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 cggagtggttatttacagaggtgt 68 |||| ||||||||||||||||||| Sbjct: 100771 cggaatggttatttacagaggtgt 100794
>emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chromosome 4, complete sequence Length = 217762 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 153 ggagacggacagcccgcggagcccggag 180 |||| |||||||||||||| |||||||| Sbjct: 132127 ggaggcggacagcccgcggggcccggag 132100
>dbj|AP000915.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-720L2, complete sequences Length = 188439 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 618 accaaattaattccatttttacat 641 |||||||||||||| ||||||||| Sbjct: 147854 accaaattaattccttttttacat 147831 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,550,868 Number of Sequences: 3902068 Number of extensions: 7550868 Number of successful extensions: 167273 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 165991 Number of HSP's gapped (non-prelim): 1282 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)