Clone Name | basd3o13 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479599.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1995 Score = 268 bits (135), Expect = 2e-68 Identities = 426/523 (81%) Strand = Plus / Plus Query: 8 tcaaggcttcagcttacgaccacaaaaagtggcatagtttggtttgatcaagtatcactt 67 |||||||| |||||||| |||| |||||||| | ||||| | || || || ||| || Sbjct: 640 tcaaggctccagcttacaaccagcaaaagtggggtgatttggctcgaccaggtgtcagtt 699 Query: 68 atgccatctgatacttacatggggcatggttatcgtaaagatcttgcgtctatgctggca 127 |||||||| ||||| |||||||| || |||| | | |||||||| || |||||| |||| Sbjct: 700 atgccatcggatacctacatgggacacggttttaggaaagatctcgcttctatgttggcc 759 Query: 128 aatctaaagcctaaatttttgaaattcccaggtggaaactatgtcatgggaaactatctg 187 ||| |||| ||| ||||| | || || |||||||| ||||||| ||||||||| |||||| Sbjct: 760 aatttaaaacctcaatttcttaagtttccaggtggtaactatgccatgggaaattatctg 819 Query: 188 ttaaatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcatttt 247 |||||||||||| |||||||||||||| || || |||||||| ||||| ||||| || Sbjct: 820 cgaaatgcatttcgatggagtgaaactgtgggtccatgggaggaaagacccggtcacttc 879 Query: 248 aatgatgtttggggctactggactgatgatggacttggattctttgagttccttcaatta 307 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 880 aatgatgcctggggatactggactgatgatggacttggattctttgagttccttcagcta 939 Query: 308 gcagaagaccttggtgcttgcccagtttgggtggtcaatgatggggctagccgatatgaa 367 || |||||||| ||||||| ||||| ||||||||||||||||| || |||| | ||||| Sbjct: 940 gctgaagacctcggtgcttcgccagtatgggtggtcaatgatggagcaagccaaaatgaa 999 Query: 368 caagtatcatctgccacaatagctgcttttgtaaaggatgttgttgacagtattgagttt 427 | ||||| |||| ||||| || | || || ||||| || ||||| | || |||||| Sbjct: 1000 gaggtatctactgcaacaattgcatcattagtgaaggacgtggttgatggcatcgagttt 1059 Query: 428 gcaaggggagaccctgggacttcatggggttcagttcgtgcagcaatgggacacccagag 487 || ||||||| || |||| |||||||||||||||||||||| ||||| || ||| | Sbjct: 1060 gccaggggagggcccaagactacatggggttcagttcgtgcagcgatgggtcatccacaa 1119 Query: 488 ccctttcagcttaattatatttctatgggaaatcaggaatgct 530 |||||| | ||| | ||| |||| || || ||||| ||||||| Sbjct: 1120 ccctttaaccttgactatgtttcaatagggaatcaagaatgct 1162
>dbj|AK064838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F23, full insert sequence Length = 2574 Score = 244 bits (123), Expect = 3e-61 Identities = 351/427 (82%) Strand = Plus / Plus Query: 104 aaagatcttgcgtctatgctggcaaatctaaagcctaaatttttgaaattcccaggtgga 163 |||||||| || |||||| |||| ||| |||| ||| ||||| | || || |||||||| Sbjct: 975 aaagatctcgcttctatgttggccaatttaaaacctcaatttcttaagtttccaggtggt 1034 Query: 164 aactatgtcatgggaaactatctgttaaatgcatttcgctggagtgaaactgttggaccc 223 ||||||| ||||||||| |||||| |||||||||||| |||||||||||||| || || Sbjct: 1035 aactatgccatgggaaattatctgcgaaatgcatttcgatggagtgaaactgtgggtcca 1094 Query: 224 tgggaggagagacctggtcattttaatgatgtttggggctactggactgatgatggactt 283 |||||||| ||||| ||||| || ||||||| ||||| ||||||||||||||||||||| Sbjct: 1095 tgggaggaaagacccggtcacttcaatgatgcctggggatactggactgatgatggactt 1154 Query: 284 ggattctttgagttccttcaattagcagaagaccttggtgcttgcccagtttgggtggtc 343 |||||||||||||||||||| |||| |||||||| ||||||| ||||| ||||||||| Sbjct: 1155 ggattctttgagttccttcagctagctgaagacctcggtgcttcgccagtatgggtggtc 1214 Query: 344 aatgatggggctagccgatatgaacaagtatcatctgccacaatagctgcttttgtaaag 403 |||||||| || |||| | ||||| | ||||| |||| ||||| || | || || ||| Sbjct: 1215 aatgatggagcaagccaaaatgaagaggtatctactgcaacaattgcatcattagtgaag 1274 Query: 404 gatgttgttgacagtattgagtttgcaaggggagaccctgggacttcatggggttcagtt 463 || || ||||| | || |||||||| ||||||| || |||| |||||||||||||| Sbjct: 1275 gacgtggttgatggcatcgagtttgccaggggagggcccaagactacatggggttcagtt 1334 Query: 464 cgtgcagcaatgggacacccagagccctttcagcttaattatatttctatgggaaatcag 523 |||||||| ||||| || ||| | |||||| | ||| | ||| |||| || || ||||| Sbjct: 1335 cgtgcagcgatgggtcatccacaaccctttaaccttgactatgtttcaatagggaatcaa 1394 Query: 524 gaatgct 530 ||||||| Sbjct: 1395 gaatgct 1401
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 165 bits (83), Expect = 2e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 157 aggtggaaactatgtcatgggaaactatctgttaaatgcatttcgctggagtgaaactgt 216 |||||| ||||||| ||||||||| |||||| |||||||||||| |||||||||||||| Sbjct: 29132005 aggtggtaactatgccatgggaaattatctgcgaaatgcatttcgatggagtgaaactgt 29132064 Query: 217 tggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactgatga 276 || || |||||||| ||||| ||||| || ||||||| ||||| |||||||||||||| Sbjct: 29132065 gggtccatgggaggaaagacccggtcacttcaatgatgcctggggatactggactgatga 29132124 Query: 277 tggacttggattctttgagttccttca 303 ||||||||||||||||||||||||||| Sbjct: 29132125 tggacttggattctttgagttccttca 29132151 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 445 gacttcatggggttcagttcgtgcagcaatgggacacccagagccctttcagcttaatta 504 |||| |||||||||||||||||||||| ||||| || ||| | |||||| | ||| | || Sbjct: 29132555 gactacatggggttcagttcgtgcagcgatgggtcatccacaaccctttaaccttgacta 29132614 Query: 505 tatttctatgggaaatcaggaatgct 530 | |||| || || ||||| ||||||| Sbjct: 29132615 tgtttcaatagggaatcaagaatgct 29132640 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 306 tagcagaagaccttggtgcttgcccagtttgggtggtcaatgatgg 351 |||| |||||||| ||||||| ||||| ||||||||||||||||| Sbjct: 29132239 tagctgaagacctcggtgcttcgccagtatgggtggtcaatgatgg 29132284
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1150_E04 Length = 130973 Score = 165 bits (83), Expect = 2e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 157 aggtggaaactatgtcatgggaaactatctgttaaatgcatttcgctggagtgaaactgt 216 |||||| ||||||| ||||||||| |||||| |||||||||||| |||||||||||||| Sbjct: 67123 aggtggtaactatgccatgggaaattatctgcgaaatgcatttcgatggagtgaaactgt 67182 Query: 217 tggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactgatga 276 || || |||||||| ||||| ||||| || ||||||| ||||| |||||||||||||| Sbjct: 67183 gggtccatgggaggaaagacccggtcacttcaatgatgcctggggatactggactgatga 67242 Query: 277 tggacttggattctttgagttccttca 303 ||||||||||||||||||||||||||| Sbjct: 67243 tggacttggattctttgagttccttca 67269 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 445 gacttcatggggttcagttcgtgcagcaatgggacacccagagccctttcagcttaatta 504 |||| |||||||||||||||||||||| ||||| || ||| | |||||| | ||| | || Sbjct: 67673 gactacatggggttcagttcgtgcagcgatgggtcatccacaaccctttaaccttgacta 67732 Query: 505 tatttctatgggaaatcaggaatgct 530 | |||| || || ||||| ||||||| Sbjct: 67733 tgtttcaatagggaatcaagaatgct 67758 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 306 tagcagaagaccttggtgcttgcccagtttgggtggtcaatgatgg 351 |||| |||||||| ||||||| ||||| ||||||||||||||||| Sbjct: 67357 tagctgaagacctcggtgcttcgccagtatgggtggtcaatgatgg 67402
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1200_C08 Length = 106214 Score = 165 bits (83), Expect = 2e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 157 aggtggaaactatgtcatgggaaactatctgttaaatgcatttcgctggagtgaaactgt 216 |||||| ||||||| ||||||||| |||||| |||||||||||| |||||||||||||| Sbjct: 79962 aggtggtaactatgccatgggaaattatctgcgaaatgcatttcgatggagtgaaactgt 80021 Query: 217 tggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactgatga 276 || || |||||||| ||||| ||||| || ||||||| ||||| |||||||||||||| Sbjct: 80022 gggtccatgggaggaaagacccggtcacttcaatgatgcctggggatactggactgatga 80081 Query: 277 tggacttggattctttgagttccttca 303 ||||||||||||||||||||||||||| Sbjct: 80082 tggacttggattctttgagttccttca 80108 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 445 gacttcatggggttcagttcgtgcagcaatgggacacccagagccctttcagcttaatta 504 |||| |||||||||||||||||||||| ||||| || ||| | |||||| | ||| | || Sbjct: 80512 gactacatggggttcagttcgtgcagcgatgggtcatccacaaccctttaaccttgacta 80571 Query: 505 tatttctatgggaaatcaggaatgct 530 | |||| || || ||||| ||||||| Sbjct: 80572 tgtttcaatagggaatcaagaatgct 80597 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 306 tagcagaagaccttggtgcttgcccagtttgggtggtcaatgatgg 351 |||| |||||||| ||||||| ||||| ||||||||||||||||| Sbjct: 80196 tagctgaagacctcggtgcttcgccagtatgggtggtcaatgatgg 80241
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 137 bits (69), Expect = 4e-29 Identities = 129/149 (86%) Strand = Plus / Minus Query: 156 caggtggaaactatgtcatgggaaactatctgttaaatgcatttcgctggagtgaaactg 215 ||||||||||||||||||||||||| ||| | | || ||||| || ||||||||||| Sbjct: 11526203 caggtggaaactatgtcatgggaaattatttactgaacgcattccggtggagtgaaacca 11526144 Query: 216 ttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactgatg 275 ||||||| ||||| |||||||||||||| ||||||||||||||| || |||||||||| Sbjct: 11526143 ttggaccttgggaagagagacctggtcactttaatgatgtttggaattattggactgatg 11526084 Query: 276 atggacttggattctttgagttccttcaa 304 ||||||| || || ||||||||||||||| Sbjct: 11526083 atggactaggcttttttgagttccttcaa 11526055 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 402 aggatgttgttgacagtattgagtttgcaaggggagaccctgggacttcatggggttcag 461 |||| |||||||| | ||||||||||| |||||||||||| |||| |||||||||||| Sbjct: 11525241 aggacgttgttgatggcattgagtttgctaggggagaccctaagactacatggggttcag 11525182 Query: 462 ttcgtgcagcaatgggacacccagagccctttcagcttaattatatttctatgggaaatc 521 ||||||||||||||||||| ||||||||||||| |||| |||||||||| | || |||| Sbjct: 11525181 ttcgtgcagcaatgggacatccagagccctttccgctttattatatttcagtagggaatc 11525122 Query: 522 aggaatgctcaa 533 | |||||||||| Sbjct: 11525121 aagaatgctcaa 11525110 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 88 ggggcatggttatcgtaaagatcttgcgtctatgctggcaaatctaaagcctaaattttt 147 ||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||| Sbjct: 11526998 ggggcatggttttcgtaaagatcttgccactatgctggcaaatctgaagcctcggttttt 11526939 Query: 148 gaaattcccaggt 160 ||||| |||||| Sbjct: 11526938 aaaatttccaggt 11526926 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 308 gcagaagaccttggtgcttgcccagtttgggtggtcaatgatgg 351 ||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct: 11525955 gcagaagaccttgatgcctgcccagtttgggtgatcaatgatgg 11525912 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 375 catctgccacaatagctgcttttgtaaagg 404 ||||||| |||||||||||||||||||||| Sbjct: 11525781 catctgcaacaatagctgcttttgtaaagg 11525752
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 137 bits (69), Expect = 4e-29 Identities = 129/149 (86%) Strand = Plus / Minus Query: 156 caggtggaaactatgtcatgggaaactatctgttaaatgcatttcgctggagtgaaactg 215 ||||||||||||||||||||||||| ||| | | || ||||| || ||||||||||| Sbjct: 76775 caggtggaaactatgtcatgggaaattatttactgaacgcattccggtggagtgaaacca 76716 Query: 216 ttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactgatg 275 ||||||| ||||| |||||||||||||| ||||||||||||||| || |||||||||| Sbjct: 76715 ttggaccttgggaagagagacctggtcactttaatgatgtttggaattattggactgatg 76656 Query: 276 atggacttggattctttgagttccttcaa 304 ||||||| || || ||||||||||||||| Sbjct: 76655 atggactaggcttttttgagttccttcaa 76627 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 402 aggatgttgttgacagtattgagtttgcaaggggagaccctgggacttcatggggttcag 461 |||| |||||||| | ||||||||||| |||||||||||| |||| |||||||||||| Sbjct: 75813 aggacgttgttgatggcattgagtttgctaggggagaccctaagactacatggggttcag 75754 Query: 462 ttcgtgcagcaatgggacacccagagccctttcagcttaattatatttctatgggaaatc 521 ||||||||||||||||||| ||||||||||||| |||| |||||||||| | || |||| Sbjct: 75753 ttcgtgcagcaatgggacatccagagccctttccgctttattatatttcagtagggaatc 75694 Query: 522 aggaatgctcaa 533 | |||||||||| Sbjct: 75693 aagaatgctcaa 75682 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 88 ggggcatggttatcgtaaagatcttgcgtctatgctggcaaatctaaagcctaaattttt 147 ||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||| Sbjct: 77570 ggggcatggttttcgtaaagatcttgccactatgctggcaaatctgaagcctcggttttt 77511 Query: 148 gaaattcccaggt 160 ||||| |||||| Sbjct: 77510 aaaatttccaggt 77498 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 308 gcagaagaccttggtgcttgcccagtttgggtggtcaatgatgg 351 ||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct: 76527 gcagaagaccttgatgcctgcccagtttgggtgatcaatgatgg 76484 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 375 catctgccacaatagctgcttttgtaaagg 404 ||||||| |||||||||||||||||||||| Sbjct: 76353 catctgcaacaatagctgcttttgtaaagg 76324
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 137 bits (69), Expect = 4e-29 Identities = 129/149 (86%) Strand = Plus / Minus Query: 156 caggtggaaactatgtcatgggaaactatctgttaaatgcatttcgctggagtgaaactg 215 ||||||||||||||||||||||||| ||| | | || ||||| || ||||||||||| Sbjct: 11522966 caggtggaaactatgtcatgggaaattatttactgaacgcattccggtggagtgaaacca 11522907 Query: 216 ttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactgatg 275 ||||||| ||||| |||||||||||||| ||||||||||||||| || |||||||||| Sbjct: 11522906 ttggaccttgggaagagagacctggtcactttaatgatgtttggaattattggactgatg 11522847 Query: 276 atggacttggattctttgagttccttcaa 304 ||||||| || || ||||||||||||||| Sbjct: 11522846 atggactaggcttttttgagttccttcaa 11522818 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 402 aggatgttgttgacagtattgagtttgcaaggggagaccctgggacttcatggggttcag 461 |||| |||||||| | ||||||||||| |||||||||||| |||| |||||||||||| Sbjct: 11522004 aggacgttgttgatggcattgagtttgctaggggagaccctaagactacatggggttcag 11521945 Query: 462 ttcgtgcagcaatgggacacccagagccctttcagcttaattatatttctatgggaaatc 521 ||||||||||||||||||| ||||||||||||| |||| |||||||||| | || |||| Sbjct: 11521944 ttcgtgcagcaatgggacatccagagccctttccgctttattatatttcagtagggaatc 11521885 Query: 522 aggaatgctcaa 533 | |||||||||| Sbjct: 11521884 aagaatgctcaa 11521873 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 88 ggggcatggttatcgtaaagatcttgcgtctatgctggcaaatctaaagcctaaattttt 147 ||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||| Sbjct: 11523761 ggggcatggttttcgtaaagatcttgccactatgctggcaaatctgaagcctcggttttt 11523702 Query: 148 gaaattcccaggt 160 ||||| |||||| Sbjct: 11523701 aaaatttccaggt 11523689 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 308 gcagaagaccttggtgcttgcccagtttgggtggtcaatgatgg 351 ||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct: 11522718 gcagaagaccttgatgcctgcccagtttgggtgatcaatgatgg 11522675 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 375 catctgccacaatagctgcttttgtaaagg 404 ||||||| |||||||||||||||||||||| Sbjct: 11522544 catctgcaacaatagctgcttttgtaaagg 11522515
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence Length = 96930 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 190 aaatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaa 249 ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| Sbjct: 70674 aaatgcatttcgctggaaggaaagcattggaccctgggaggagagacctgggcattttgg 70615 Query: 250 tgatgtttggggctactggactgatgatggacttggattctttgagttccttcaa 304 |||||||||| || |||||||||||||||||||| | ||||||||| |||||| Sbjct: 70614 tgatgtttggatgtattggactgatgatggacttggttactttgagtttcttcaa 70560
>gb|AY487314.1| Ficus carica a-arabinofuranosidase 1 mRNA, partial cds Length = 816 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 209 gaaactgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactgg 268 ||||| |||||||||||||| ||||||||||| |||||| |||||||||| |||||| Sbjct: 532 gaaaccgttggaccctgggaagagagacctgggcattttggtgatgtttggttttactgg 591 Query: 269 actgatgatggacttggattctttgagttccttcaattagcagaagaccttggtgc 324 ||||||||||| |||| | |||||||| |||||| |||||||||| |||||||| Sbjct: 592 actgatgatgggattggttattttgagtttcttcaactagcagaagatcttggtgc 647
>gb|AY309436.1| Malus x domestica alpha-L-arabinofuranosidase (AFase1) mRNA, complete cds Length = 2489 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 ||||||||||| |||| ||||| ||||||||||||| ||||||||||| || ||| | Sbjct: 1010 aatgcatttcgttggaaagaaacaattggaccctgggaagagagacctggacactttggt 1069 Query: 251 gatgtttggggctactggactgatgatggacttggattctttgagttccttcaattagca 310 ||||||||| ||||||||||| ||||||||||| | |||||||| || ||| || || Sbjct: 1070 gatgtttggatgtactggactgacgatggacttggttattttgagtttctccaactatca 1129 Query: 311 gaagaccttgg 321 || |||||||| Sbjct: 1130 gaggaccttgg 1140 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 450 catggggttcagttcgtgcagcaatgggacacccagagcccttt 493 |||||||||| ||||||| ||||||||||||||||| |||||| Sbjct: 1269 catggggttctcttcgtgctgcaatgggacacccagaacccttt 1312
>dbj|AB073311.1| Pyrus pyrifolia PPARF1 mRNA for alpha-L-arabinofuranosidase, complete cds Length = 2345 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 ||||||||||| |||| ||||| ||||||||||||| ||||||||||| || ||| | Sbjct: 1031 aatgcatttcgttggaaagaaacaattggaccctgggaagagagacctggacactttggt 1090 Query: 251 gatgtttggggctactggactgatgatggacttggattctttgagttccttcaattagca 310 ||||||||| ||||||||||| ||||||||||| | |||||||| || ||| || || Sbjct: 1091 gatgtttggaagtactggactgacgatggacttggttattttgagtttctccaactatca 1150 Query: 311 gaagaccttgg 321 || |||||||| Sbjct: 1151 gaggaccttgg 1161 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Plus Query: 450 catggggttcagttcgtgcagcaatgggacacccagagcccttt 493 |||||||||| ||||||| ||||||||||| || ||||||||| Sbjct: 1290 catggggttctcttcgtgctgcaatgggacatcccgagcccttt 1333
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120 mRNA, complete cds Length = 2208 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 |||||||| ||||||| ||||| || || | ||||| ||||||||||| |||| | | Sbjct: 904 aatgcattccgctggaaagaaaccgtgagagcttgggaagagagacctggccattatggt 963 Query: 251 gatgtttggggctactggactgatgatggacttggattctttgagttccttcaattagca 310 ||||||||| ||||||||||||||||| ||||| |||||| ||| ||||| | ||| Sbjct: 964 gatgtttggaagtactggactgatgatggccttggccactttgaattctttcaacttgca 1023 Query: 311 gaagaccttggtgc 324 |||||||||||||| Sbjct: 1024 gaagaccttggtgc 1037 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 450 catggggttcagttcgtgcagcaatgggacacccagagcc 489 ||||||| || ||||| || ||||||||||| |||||||| Sbjct: 1163 catggggatcggttcgagctgcaatgggacatccagagcc 1202
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA, complete cds Length = 2043 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 |||||||| ||||||| ||||| || || | ||||| ||||||||||| |||| | | Sbjct: 834 aatgcattccgctggaaagaaaccgtgagagcttgggaagagagacctggccattatggt 893 Query: 251 gatgtttggggctactggactgatgatggacttggattctttgagttccttcaattagca 310 ||||||||| ||||||||||||||||| ||||| |||||| ||| ||||| | ||| Sbjct: 894 gatgtttggaagtactggactgatgatggccttggccactttgaattctttcaacttgca 953 Query: 311 gaagaccttggtgc 324 |||||||||||||| Sbjct: 954 gaagaccttggtgc 967 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 450 catggggttcagttcgtgcagcaatgggacacccagagcc 489 ||||||| || ||||| || ||||||||||| |||||||| Sbjct: 1093 catggggatcggttcgagctgcaatgggacatccagagcc 1132
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA, complete cds Length = 2219 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 |||||||| ||||||| ||||| || || | ||||| ||||||||||| |||| | | Sbjct: 904 aatgcattccgctggaaagaaaccgtgagagcttgggaagagagacctggccattatggt 963 Query: 251 gatgtttggggctactggactgatgatggacttggattctttgagttccttcaattagca 310 ||||||||| ||||||||||||||||| ||||| |||||| ||| ||||| | ||| Sbjct: 964 gatgtttggaagtactggactgatgatggccttggccactttgaattctttcaacttgca 1023 Query: 311 gaagaccttggtgc 324 |||||||||||||| Sbjct: 1024 gaagaccttggtgc 1037 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 450 catggggttcagttcgtgcagcaatgggacacccagagcc 489 ||||||| || ||||| || ||||||||||| |||||||| Sbjct: 1163 catggggatcggttcgagctgcaatgggacatccagagcc 1202
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA, complete cds Length = 2055 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 |||||||| ||||||| ||||| || || | ||||| ||||||||||| |||| | | Sbjct: 829 aatgcattccgctggaaagaaaccgtgagagcttgggaagagagacctggccattatggt 888 Query: 251 gatgtttggggctactggactgatgatggacttggattctttgagttccttcaattagca 310 ||||||||| ||||||||||||||||| ||||| |||||| ||| ||||| | ||| Sbjct: 889 gatgtttggaagtactggactgatgatggccttggccactttgaattctttcaacttgca 948 Query: 311 gaagaccttggtgc 324 |||||||||||||| Sbjct: 949 gaagaccttggtgc 962 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 450 catggggttcagttcgtgcagcaatgggacacccagagcc 489 ||||||| || ||||| || ||||||||||| |||||||| Sbjct: 1088 catggggatcggttcgagctgcaatgggacatccagagcc 1127
>gb|AF429985.1|AF429985 Lycopersicon esculentum arabinosidase ARA-1 mRNA, complete cds Length = 2113 Score = 69.9 bits (35), Expect = 8e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 190 aaatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaa 249 |||||||||||| |||| |||||| |||||| ||||| ||||| || || ||||| Sbjct: 829 aaatgcatttcggtggaaagaaactattggacaatgggaagagaggcccggacatttcgg 888 Query: 250 tgatgtttggggctactggactgatgatggacttggattctttgagttcct 300 |||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 889 tgatgtttggaattactggactgatgatggacttggacattttgagttcct 939 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgccatctgatacttacatggggcatgg 96 |||||||||||||||| ||| | ||||| |||| || |||| ||||||||| Sbjct: 684 tttggtttgatcaagtctcattaatgcctactgacacatacaaggggcatgg 735
>dbj|AB073310.1| Lycopersicon esculentum LeARF1 mRNA for alpha-L-arabinofuranosidase, complete cds Length = 2147 Score = 69.9 bits (35), Expect = 8e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 190 aaatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaa 249 |||||||||||| |||| |||||| |||||| ||||| ||||| || || ||||| Sbjct: 866 aaatgcatttcggtggaaagaaactattggacaatgggaagagaggcccggacatttcgg 925 Query: 250 tgatgtttggggctactggactgatgatggacttggattctttgagttcct 300 |||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 926 tgatgtttggaattactggactgatgatggacttggacattttgagttcct 976 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgccatctgatacttacatggggcatgg 96 |||||||||||||||| ||| | ||||| |||| || |||| ||||||||| Sbjct: 721 tttggtttgatcaagtctcattaatgcctactgacacatacaaggggcatgg 772
>ref|XM_471515.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1965 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 213 ctgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactg 272 ||||||| || ||||||||||| ||||| || ||| |||||| ||||| || ||||||| Sbjct: 824 ctgttggtccgtgggaggagaggcctggacactttggtgatgtctggggttattggactg 883 Query: 273 atgatggacttggat 287 ||||||| ||||||| Sbjct: 884 atgatggccttggat 898
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence Length = 142659 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 ||||||||||| |||| || | ||||||||| ||||| |||||| |||| || |||||| Sbjct: 74404 aatgcatttcggtggaaagagagtgttggaccatgggaagagagagctggacactttaat 74463 Query: 251 gatgtttggggctactggactgatgatggacttgg 285 ||| ||||| || ||||| |||||||||||||| Sbjct: 74464 gatatttggaagtattggacggatgatggacttgg 74498 Score = 58.0 bits (29), Expect = 3e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 ||||||||||| |||| || | ||||||||| ||||| | ||||||||||| || ||| Sbjct: 90583 aatgcatttcggtggaaagatagtgttggaccatgggaacaaagacctggtcacttgaat 90642 Query: 251 gatgtttggggctactggactgatgatggacttggattctttgag 295 ||| ||||| || ||||| |||||||||||||| || |||||| Sbjct: 90643 gatatttggaattattggacagatgatggacttggtttttttgag 90687 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 213 ctgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactg 272 |||||||||| |||||||||||||| || || || |||||| ||| |||||||||| Sbjct: 56865 ctgttggaccttgggaggagagaccagggcacttcggtgatgtatggaagtactggactg 56924 Query: 273 atgatggacttgg 285 ||||||||||||| Sbjct: 56925 atgatggacttgg 56937
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 213 ctgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactg 272 ||||||| || ||||||||||| ||||| || ||| |||||| ||||| || ||||||| Sbjct: 11558618 ctgttggtccgtgggaggagaggcctggacactttggtgatgtctggggttattggactg 11558559 Query: 273 atgatggacttggat 287 ||||||| ||||||| Sbjct: 11558558 atgatggccttggat 11558544
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09, complete sequence Length = 164911 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 213 ctgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactg 272 ||||||| || ||||||||||| ||||| || ||| |||||| ||||| || ||||||| Sbjct: 41628 ctgttggtccgtgggaggagaggcctggacactttggtgatgtctggggttattggactg 41569 Query: 273 atgatggacttggat 287 ||||||| ||||||| Sbjct: 41568 atgatggccttggat 41554
>gb|AF320324.1|AF320324 Hordeum vulgare arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I mRNA, complete cds Length = 2068 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 51 ttgatcaagtatcacttatgccatctgatacttacatggggcatggtt 98 |||||||||||||||| ||||| || ||||| |||| ||||||||||| Sbjct: 698 ttgatcaagtatcactcatgccttcggatacatacaaggggcatggtt 745 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggattctttgagttccttcaattagcagaagaccttggt 322 |||||||| |||||||| || |||| | |||||| ||||| | || |||||||||||| Sbjct: 910 tactggacggatgatggcctcggatattatgagtttcttcagcttgctgaagaccttggt 969 Query: 323 gcttgcccagtttgggt 339 ||| |||||| ||||| Sbjct: 970 gctgccccagtctgggt 986
>gb|DQ486870.1| Prunus persica alpha-L-arabinofuranosidase mRNA, partial cds Length = 701 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 190 aaatgcatttcgctggagtgaaactgttggaccctgggaggagagacctgg 240 |||||||||||| |||| ||||| ||||||||||||| ||||||||||| Sbjct: 651 aaatgcatttcgttggaaagaaacaattggaccctgggaagagagacctgg 701
>gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24 Length = 127053 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 191 aatgcatttcgctggagtgaaactgttggaccctgggaggagagacctggtcattttaat 250 |||||||| ||||||| ||||| || || | ||||| ||||||||||| |||| | | Sbjct: 22219 aatgcattccgctggaaagaaaccgtgagagcttgggaagagagacctggccattatggt 22278 Query: 251 gatgtttggggctactggactgatgatggacttgg 285 ||||||||| ||||||||||||||||| ||||| Sbjct: 22279 gatgtttggaagtactggactgatgatggccttgg 22313 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 450 catggggttcagttcgtgcagcaatgggacacccagagcc 489 ||||||| || ||||| || ||||||||||| |||||||| Sbjct: 22727 catggggatcggttcgagctgcaatgggacatccagagcc 22766
>dbj|AP004538.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04C07, TM0098b, complete sequence Length = 28884 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 216 ttggaccctgggaggagagacctggtcattttaatgatgtttggggctactggactgatg 275 ||||||| ||||| |||||||| || || ||| |||||||||| ||||||||||||| Sbjct: 19978 ttggaccttgggaagagagaccggggcactttggtgatgtttggaagtactggactgatg 20037 Query: 276 atggacttgg 285 |||| ||||| Sbjct: 20038 atggccttgg 20047 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tactggactgatgatggact 282 |||||||||||||||||||| Sbjct: 27054 tactggactgatgatggact 27073
>gb|AY106254.1| Zea mays PCO073074 mRNA sequence Length = 2589 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggattctttgagttccttca 303 ||||||||||||||||| ||||||| | |||||||||||| Sbjct: 1270 tactggactgatgatgggcttggatattatgagttccttca 1310 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 44 gtttggtttgatcaagtatcacttatgcc 72 |||||| |||||||||||||||| ||||| Sbjct: 1051 gtttggcttgatcaagtatcactcatgcc 1079
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgccatc 75 |||||||||||||||| ||||| |||||||| Sbjct: 1399246 tttggtttgatcaagtgtcactcatgccatc 1399276 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 1361779 tactggactgatgatggccttggat 1361803
>gb|AY105192.1| Zea mays PCO073073 mRNA sequence Length = 1200 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Plus Query: 393 cttttgtaaaggatgttgttgacagtattgagtttgcaagggg 435 |||||||||||||||| | |||||||| || ||||||||||| Sbjct: 32 cttttgtaaaggatgtattggacagtatagaatttgcaagggg 74
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgccatc 75 |||||||||||||||| ||||| |||||||| Sbjct: 1399246 tttggtttgatcaagtgtcactcatgccatc 1399276 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 1361779 tactggactgatgatggccttggat 1361803
>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157453 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 45 tttggtttgatcaagtatcacttatgccatc 75 |||||||||||||||| ||||| |||||||| Sbjct: 29923 tttggtttgatcaagtgtcactcatgccatc 29893 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 67390 tactggactgatgatggccttggat 67366
>gb|AF320325.1|AF320325 Hordeum vulgare arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II mRNA, complete cds Length = 2451 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 47 tggtttgatcaagtatcacttatgcc 72 |||||||||||||||||||| ||||| Sbjct: 932 tggtttgatcaagtatcactcatgcc 957
>gb|AC149480.1| Populus trichocarpa clone Pop1-048O04, complete sequence Length = 141416 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 ttttaatgatgtttggggcta 264 ||||||||||||||||||||| Sbjct: 120832 ttttaatgatgtttggggcta 120852
>emb|AL513102.8| Human DNA sequence from clone RP11-32B11 on chromosome 9 Contains the 5' end of the CRSP8 gene for subunit 8 of a cofactor required for Sp1 transcriptional activation and a novel gene, complete sequence Length = 142933 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 cacaatagctgcttttgtaaa 402 ||||||||||||||||||||| Sbjct: 116804 cacaatagctgcttttgtaaa 116824
>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035B18, complete sequence Length = 123425 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 209 gaaactgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactgg 268 |||||| |||| || ||||| ||||||||||| || | | ||||||||| ||||||| Sbjct: 84344 gaaactattggtccatgggaagagagacctgggcactatggagatgtttggcactactgg 84403 Query: 269 actgatgatggacttgg 285 || |||||||| ||||| Sbjct: 84404 accgatgatggccttgg 84420 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 76426 tactggactgatgatggccttggat 76450 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgcc 72 |||||||||||||||| ||||| ||||| Sbjct: 106994 tttggtttgatcaagtgtcactcatgcc 107021
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 209 gaaactgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactgg 268 |||||| |||| || ||||| ||||||||||| || | | ||||||||| ||||||| Sbjct: 1465549 gaaactattggtccatgggaagagagacctgggcactatggagatgtttggcactactgg 1465608 Query: 269 actgatgatggacttgg 285 || |||||||| ||||| Sbjct: 1465609 accgatgatggccttgg 1465625 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 1457631 tactggactgatgatggccttggat 1457655 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgcc 72 |||||||||||||||| ||||| ||||| Sbjct: 1488199 tttggtttgatcaagtgtcactcatgcc 1488226
>gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, complete sequence Length = 180602 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tggattctttgagttccttca 303 ||||||||||||||||||||| Sbjct: 179267 tggattctttgagttccttca 179247
>dbj|D29742.1| Daucus carota mRNA for arabinofuranosidase, complete cds Length = 2502 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 250 tgatgtttggggctactggactgatgatggact 282 ||||||||||| |||||||| ||||||||||| Sbjct: 1084 tgatgtttgggattactggacagatgatggact 1116
>dbj|AK099668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067L10, full insert sequence Length = 2367 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 209 gaaactgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactgg 268 |||||| |||| || ||||| ||||||||||| || | | ||||||||| ||||||| Sbjct: 1063 gaaactattggtccatgggaagagagacctgggcactatggagatgtttggcactactgg 1122 Query: 269 actgatgatggacttgg 285 || |||||||| ||||| Sbjct: 1123 accgatgatggccttgg 1139
>dbj|AK072576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131M13, full insert sequence Length = 2272 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 1025 tactggactgatgatggccttggat 1049
>dbj|AK065240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I08, full insert sequence Length = 2285 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 1030 tactggactgatgatggccttggat 1054 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 47 tggtttgatcaagtatcacttatgccatctgatacttacatggggcatggtt 98 ||||||||||||||||| || ||||| | || ||||||| ||| ||||||| Sbjct: 814 tggtttgatcaagtatcgctcatgcctgcagacacttacaagggacatggtt 865
>dbj|AP003477.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2047A4 Length = 179110 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 atagctgcttttgtaaaggat 406 ||||||||||||||||||||| Sbjct: 66935 atagctgcttttgtaaaggat 66955
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 209 gaaactgttggaccctgggaggagagacctggtcattttaatgatgtttggggctactgg 268 |||||| |||| || ||||| ||||||||||| || | | ||||||||| ||||||| Sbjct: 1463270 gaaactattggtccatgggaagagagacctgggcactatggagatgtttggcactactgg 1463329 Query: 269 actgatgatggacttgg 285 || |||||||| ||||| Sbjct: 1463330 accgatgatggccttgg 1463346 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tactggactgatgatggacttggat 287 ||||||||||||||||| ||||||| Sbjct: 1455352 tactggactgatgatggccttggat 1455376 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgcc 72 |||||||||||||||| ||||| ||||| Sbjct: 1485920 tttggtttgatcaagtgtcactcatgcc 1485947
>gb|AY817669.1| Homo sapiens glutathione S-transferase omega 1-1 (GSTO1) gene, complete cds Length = 16056 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 ttttgtaaaggatgttgttg 413 |||||||||||||||||||| Sbjct: 14363 ttttgtaaaggatgttgttg 14382
>ref|NM_004535.2| Homo sapiens myelin transcription factor 1 (MYT1), mRNA Length = 5550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 1905 gcagcaatgggacacccaga 1886
>ref|XM_581853.2| PREDICTED: Bos taurus similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1), transcript variant 1 (LOC505552), mRNA Length = 3585 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 1748 gcagcaatgggacacccaga 1729
>ref|XM_873537.1| PREDICTED: Bos taurus similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1), transcript variant 3 (LOC505552), mRNA Length = 2342 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 445 gcagcaatgggacacccaga 426
>ref|XM_873432.1| PREDICTED: Bos taurus similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1), transcript variant 2 (LOC505552), mRNA Length = 3651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 1751 gcagcaatgggacacccaga 1732
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24, complete sequence Length = 162385 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgcc 72 |||||||||||||||| ||||| ||||| Sbjct: 2735 tttggtttgatcaagtgtcactcatgcc 2762
>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence Length = 193188 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 acttggattctttgagttccttca 303 ||||||||||| |||||||||||| Sbjct: 153825 acttggattctgtgagttccttca 153848
>ref|XM_543112.2| PREDICTED: Canis familiaris similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1) (LOC485987), mRNA Length = 3939 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 2102 gcagcaatgggacacccaga 2083
>emb|CR936368.12| M.truncatula DNA sequence from clone MTH2-4O11 on chromosome 3, complete sequence Length = 140262 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ttctttgagttccttcaatt 306 |||||||||||||||||||| Sbjct: 16607 ttctttgagttccttcaatt 16588
>gb|AC091660.2| Bos taurus clone RP42-354B6, complete sequence Length = 173068 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 agcctaaatttttgaaattcccag 158 ||||||||||||| |||||||||| Sbjct: 38669 agcctaaatttttaaaattcccag 38692
>gb|BC053638.1| Homo sapiens myelin transcription factor 1, mRNA (cDNA clone IMAGE:4933873), partial cds Length = 4362 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 636 gcagcaatgggacacccaga 617
>emb|Z93942.1|HS230I19 Human DNA sequence from clone RP1-230I19 on chromosome 20q12-13.12 Contains part of the PTPRT gene for protein tyrosine phosphatase receptor type T, genomic marker D20S858, a ca repeat polymorphism, ESTs, STS and GSSs, complete sequence Length = 144201 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cattttaatgatgtttgggg 261 |||||||||||||||||||| Sbjct: 87152 cattttaatgatgtttgggg 87133
>emb|AL359641.10| Human DNA sequence from clone RP11-402K9 on chromosome Xq21.32-22.2 Contains a novel pseudogene and a laminin receptor 1 (ribosomal protein SA,67kDa) (LAMR1) pseudogene, complete sequence Length = 175132 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 aaggatgttgttgacagtat 420 |||||||||||||||||||| Sbjct: 125145 aaggatgttgttgacagtat 125126
>emb|AL354740.29| Human DNA sequence from clone RP11-513I15 on chromosome 6 Contains the 5' end of the GRM4 gene for glutamate receptor metabotropic 4, keratin 18 pseudogene 1 (KRT18P1), a cytochrome c, somatic (CYCS) pseudogene, the HMGA1 gene for high mobility group AT-hook 1, a ribosomal protein L35 (RPL35) pseudogene, part of a novel gene and CpG islands, complete sequence Length = 151828 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ccctgggaggagagacctgg 240 |||||||||||||||||||| Sbjct: 41763 ccctgggaggagagacctgg 41744
>emb|AL139327.18| Human DNA sequence from clone RP11-408E5 on chromosome 13q11-12.2 Contains an FSH primary respone homolog 1 (FSHPRH1) pseudogene, a paraspeckle protein 1 alpha pseudogene,a novel gene, the TUBA2 gene for tubulin alpha 2, two novel pseudogenes and a gene for a novel protein similar to DMPK-like CDC42-binding protein kinase beta (CDC42BPB), complete sequence Length = 149559 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ggcatagtttggtttgatca 57 |||||||||||||||||||| Sbjct: 112630 ggcatagtttggtttgatca 112611
>emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022E24 on chromosome 20 Contains the 3' end of the OPRL1 gene for opiate receptor-like 1 protein, the GPR8 gene encoding a G protein-coupled receptor, the KIAA0835 gene encoding a protein similar to the myelin transcription factor 1 (MYT1), a novel gene, 7 CpG islands, ESTs, STSs and GSSs, complete sequence Length = 179888 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 118603 gcagcaatgggacacccaga 118584
>emb|AL008628.1|HS140C12 Human DNA sequence from clone RP1-140C12 on chromosome 6q26-27 ContaiContains the 3' end of the gene for KIAA1838 and 2 CpG islands, complete sequence Length = 143096 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 taaagcctaaatttttgaaa 151 |||||||||||||||||||| Sbjct: 58140 taaagcctaaatttttgaaa 58159
>emb|CR293508.9| Zebrafish DNA sequence from clone CH211-13K20 in linkage group 15, complete sequence Length = 168933 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 atgttgttgacagtattgag 424 |||||||||||||||||||| Sbjct: 145248 atgttgttgacagtattgag 145267
>dbj|AB028973.1| Homo sapiens mRNA for KIAA1050 protein, partial cds Length = 5969 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 665 gcagcaatgggacacccaga 646
>gb|AC119048.2| Homo sapiens chromosome 19 clone LLNLR-229E4, complete sequence Length = 4845 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ctggtcattttaatgatgtt 256 |||||||||||||||||||| Sbjct: 1999 ctggtcattttaatgatgtt 1980
>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine K203, and chemokine ah294 genes, complete cds Length = 112034 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tgcatttcgctggagtgaaa 212 |||||||||||||||||||| Sbjct: 43808 tgcatttcgctggagtgaaa 43827
>ref|XM_695745.1| PREDICTED: Danio rerio similar to Glucocorticoid receptor DNA binding factor 1 (GAP-associated protein p190) (LOC572078), mRNA Length = 4059 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 atgttgttgacagtattgag 424 |||||||||||||||||||| Sbjct: 2021 atgttgttgacagtattgag 2040
>gb|AC008805.8| Homo sapiens chromosome 19 clone CTD-2085J24, complete sequence Length = 112184 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ctggtcattttaatgatgtt 256 |||||||||||||||||||| Sbjct: 605 ctggtcattttaatgatgtt 624
>gb|BC062313.1| Homo sapiens myelin transcription factor 1, mRNA (cDNA clone MGC:71389 IMAGE:4301464), complete cds Length = 2077 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 865 gcagcaatgggacacccaga 846
>gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546N8 map 11q, complete sequence Length = 202218 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ctggtcattttaatgatgtt 256 |||||||||||||||||||| Sbjct: 151793 ctggtcattttaatgatgtt 151812
>gb|AC021998.4|AC021998 Homo sapiens chromosome 11 clone RP11-116N3 map 11, complete sequence Length = 142446 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ctggtcattttaatgatgtt 256 |||||||||||||||||||| Sbjct: 82959 ctggtcattttaatgatgtt 82940
>dbj|AB020642.1| Homo sapiens mRNA for KIAA0835 protein, partial cds Length = 5533 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 1905 gcagcaatgggacacccaga 1886
>dbj|AK102526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096C04, full insert sequence Length = 2409 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 45 tttggtttgatcaagtatcacttatgcc 72 |||||||||||||||| ||||| ||||| Sbjct: 868 tttggtttgatcaagtgtcactcatgcc 895
>dbj|AP006215.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-729P6, complete sequence Length = 189310 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ctggtcattttaatgatgtt 256 |||||||||||||||||||| Sbjct: 168995 ctggtcattttaatgatgtt 168976
>emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on chromosome 17, complete sequence Length = 124639 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tcagcttaattatatttcta 512 |||||||||||||||||||| Sbjct: 582 tcagcttaattatatttcta 563
>emb|CR974422.14| Mouse DNA sequence from clone RP23-123G8 on chromosome 17, complete sequence Length = 189049 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tcagcttaattatatttcta 512 |||||||||||||||||||| Sbjct: 187631 tcagcttaattatatttcta 187612
>gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility locus class II region: major histocompatibility protein class II alpha chain (IAalpha) and major histocompatibility protein class II beta chain (IEbeta) genes, complete cds; butyrophilin-like (NG9), butyrophilin-like (NG10), hypothetical protein (NG8), and butyrophilin-like (NG11) genes, partial cds; NG12 pseudogene, partial sequence; and hypothetical butyrophilin-like protein (NG13) gene, partial cds Length = 245439 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tcagcttaattatatttcta 512 |||||||||||||||||||| Sbjct: 41887 tcagcttaattatatttcta 41868
>gb|M96980.1|HUMMYT1A Homo sapiens myelin transcription factor 1 (MTF1) mRNA, 3' end Length = 2623 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 gcagcaatgggacacccaga 486 |||||||||||||||||||| Sbjct: 272 gcagcaatgggacacccaga 253 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,301,680 Number of Sequences: 3902068 Number of extensions: 5301680 Number of successful extensions: 108523 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 107976 Number of HSP's gapped (non-prelim): 546 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)