ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basda09 |
|---|---|
| Clone Library Name | barley_pub |
>DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)| (DNA methyltransferase homolog MmuIIP) (DNA MTase homolog MmuIIP) (M.MmuIIP) (Met-2) Length = 415 Score = 114 bits (286), Expect = 8e-26 Identities = 59/132 (44%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Frame = +1 Query: 34 PWRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGN-IQTLTA 210 P RVLE YSGIGGM ++L + + A VV A D+N VAN+VY+HNF H I+ ++ Sbjct: 3 PLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGISL 62 Query: 211 GDLDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVV 390 D DK + +SPPCQP+TR GLQ D R SF+ IL ++ + P+ + +ENV Sbjct: 63 EDFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTTSFLYILDILPRLQKLPKYILLENVK 122 Query: 391 GFEVXDTHDQLL 426 GFEV T L+ Sbjct: 123 GFEVSSTRGLLI 134
>DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)| (DNA methyltransferase homolog HsaIIP) (DNA MTase homolog HsaIIP) (M.HsaIIP) (PuMet) Length = 391 Score = 112 bits (279), Expect = 5e-25 Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 1/132 (0%) Frame = +1 Query: 34 PWRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGN-IQTLTA 210 P RVLE YSG+GGM ++L + + A+VV A D+N VAN+VY++NF H I+ +T Sbjct: 3 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 62 Query: 211 GDLDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVV 390 + D+ +SPPCQP+TR G Q D+R SF+ IL ++ + P+ + +ENV Sbjct: 63 EEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVK 122 Query: 391 GFEVXDTHDQLL 426 GFEV T D L+ Sbjct: 123 GFEVSSTRDLLI 134
>PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.SpoI) (M.SpomI)| Length = 330 Score = 107 bits (266), Expect = 2e-23 Identities = 54/132 (40%), Positives = 79/132 (59%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDL 219 RVLE YSGIGGM Y+L + A++V A DIN AN++Y N +I TLTA D Sbjct: 8 RVLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGKLAKHMDISTLTAKDF 67 Query: 220 DKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFE 399 D + W +SP CQP+TR G +K D R+ +F+ IL+++ +++ P+ + +ENV GFE Sbjct: 68 DAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFE 127 Query: 400 VXDTHDQLLGVL 435 ++ VL Sbjct: 128 ESKAAEECRKVL 139
>MTH1_HAEHA (P05102) Modification methylase HhaI (EC 2.1.1.37)| (Cytosine-specific methyltransferase HhaI) (M.HhaI) Length = 327 Score = 57.0 bits (136), Expect = 2e-08 Identities = 40/134 (29%), Positives = 68/134 (50%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDL 219 R ++ ++G+GG R +L S G AE V + + + A +VYE NF +P +G+I + + Sbjct: 13 RFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNEKTI 69 Query: 220 DKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFE 399 + PCQ ++ G QK D+R F I +++ P+++F+ENV F Sbjct: 70 PDHDILCAGF--PCQAFSISGKQKGFEDSRGTLFFDIARIVREKK--PKVVFMENVKNFA 125 Query: 400 VXDTHDQLLGVLST 441 D + L V +T Sbjct: 126 SHDNGNTLEVVKNT 139
>MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37)| (Cytosine-specific methyltransferase HgiCI) (M.HgiCI) Length = 420 Score = 48.9 bits (115), Expect = 6e-06 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Frame = +1 Query: 40 RVLEFYSGIGGMRY----SLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLT 207 + ++ ++GIGGMR ++ G+ V + +I+ A Y NF H QG+I Sbjct: 3 KFIDLFAGIGGMRLGFEQAMHELGIETACVLSSEIDKHAQTTYAMNF-HEQSQGDIT--- 58 Query: 208 AGDLDKYKAHAWXLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVEN 384 + + + + L+ PCQP++ G QK D R F +I +++ ++ P+ +EN Sbjct: 59 --QIQDFPSFDFLLAGFPCQPFSYAGKQKGFGDTRGTLFFEIERILK--AYRPKGFLLEN 114 Query: 385 VVGFEVXDTHDQ 420 V G THD+ Sbjct: 115 VRGL---TTHDK 123
>MTNX_NEILA (P24581) Cytosine-specific methyltransferase NlaX (EC 2.1.1.37)| (M.NlaX) Length = 313 Score = 48.1 bits (113), Expect = 9e-06 Identities = 30/117 (25%), Positives = 55/117 (47%) Frame = +1 Query: 37 WRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGD 216 +++++ ++GIGG+R V + +I+ A Y+ N G+I D Sbjct: 2 FKIIDLFAGIGGIRLGFEQAFDDVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTDVAD 61 Query: 217 LDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENV 387 + + + PCQP+++ GL+K AD R F I ++ ++ PQ +ENV Sbjct: 62 IPDHDILSAGF--PCQPFSQAGLKKGFADTRGTLFFDIERIL--LAKKPQAFLLENV 114
>MTA1_CELCE (P31974) Modification methylase AluI (EC 2.1.1.37)| (Cytosine-specific methyltransferase AluI) (M.AluI) Length = 521 Score = 47.0 bits (110), Expect = 2e-05 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Frame = +1 Query: 46 LEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGD--- 216 ++ ++GIGG +LA+TG E A +I+ A VYE N+ ++P G+I T A D Sbjct: 11 VDLFAGIGGFHAALAATGGVCEY--AVEIDREAAAVYERNW-NKPALGDI-TDDANDEGV 66 Query: 217 -LDKYKAHAWXLSP--PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENV 387 L Y L+ PCQP+++ G Q A+ R F I +++ P +L +ENV Sbjct: 67 TLRGYDGPIDVLTGGFPCQPFSKSGAQHGMAETRGTLFWNIARIIEERE--PTVLILENV 124
>MTD5_DACSA (P50185) Modification methylase DsaV (EC 2.1.1.37)| (Cytosine-specific methyltransferase DsaV) (M.DsaV) Length = 351 Score = 46.2 bits (108), Expect = 4e-05 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDL 219 + ++ ++GIGGMR G + V + +I+ YE NF P G+I L+A Sbjct: 7 KFIDLFAGIGGMRIPFEELG--GKCVFSSEIDKHCQRTYEANFGEMP-TGDITKLSA--- 60 Query: 220 DKYKAHAWXLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGF 396 D H L+ PCQ +++ G ++ D R F ++ ++ + PQ + +ENV G Sbjct: 61 DSIPYHDLLLAGFPCQAFSQGGRKQGFQDERGQLFFQVAKILND--HRPQAILLENVKGL 118 Query: 397 EVXD 408 D Sbjct: 119 RGHD 122
>MTBA_BACAR (P19888) Modification methylase BanI (EC 2.1.1.37)| (Cytosine-specific methyltransferase BanI) (M.BanI) Length = 428 Score = 45.4 bits (106), Expect = 6e-05 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 4/137 (2%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEV----VEAFDINDVANDVYEHNFAHRPCQGNIQTLT 207 + ++ ++GIGG+R R E+ V + +I+ A + Y NF P QG+I +T Sbjct: 4 KFVDLFAGIGGIRIGFERAAKRFELETECVLSSEIDKKACETYALNFKEEP-QGDIHEIT 62 Query: 208 AGDLDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENV 387 + + + PCQP++ G Q+ D R F ++ ++++ P+ +ENV Sbjct: 63 SFPEFDFLLAGF----PCQPFSYAGKQQGFGDTRGTLFFEVERVLRDNR--PKAFLLENV 116 Query: 388 VGFEVXDTHDQLLGVLS 438 G D L ++S Sbjct: 117 RGLVTHDKGRTLKTIIS 133
>MTH2_HAEAE (O30868) Modification methylase HaeII (EC 2.1.1.37)| (Cytosine-specific methyltransferase HaeII) (M.HaeII) Length = 318 Score = 43.9 bits (102), Expect = 2e-04 Identities = 33/127 (25%), Positives = 60/127 (47%) Frame = +1 Query: 37 WRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGD 216 ++ ++ ++GIGG+R + G + +D A +YE NF +P G+I ++ D Sbjct: 4 YKTIDLFAGIGGIRLGFEAFGCKNVFSSEWD--KYAQSMYEVNFGEKPF-GDINDISPSD 60 Query: 217 LDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGF 396 + + PCQP++ G AD R F I ++++ + P+ +ENV Sbjct: 61 IPDHDILLAGF--PCQPFSIAGKGLGFADTRGTLFFNIEAILK--AKKPKAFLLENV--- 113 Query: 397 EVXDTHD 417 + THD Sbjct: 114 KRLTTHD 120
>MTB1_NEIGO (Q59603) Modification methylase NgoBI (EC 2.1.1.37)| (Cytosine-specific methyltransferase NgoBI) (M.NgoBI) (M.NgoI) Length = 317 Score = 43.9 bits (102), Expect = 2e-04 Identities = 35/135 (25%), Positives = 55/135 (40%) Frame = +1 Query: 37 WRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGD 216 ++ ++ +SGIGG+R G +D A VYE NF +P G+I + D Sbjct: 2 YKTIDLFSGIGGIRLGFEKYGCTNVFSSEWD--KYARQVYEANFGEKPF-GDINGIDPSD 58 Query: 217 LDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGF 396 + + PCQP++ G D R F I +++ P+ +ENV Sbjct: 59 IPDH--DILLAGFPCQPFSIAGKGLGFEDTRGTLFFNIAEILKTKQ--PKAFLLENVKRL 114 Query: 397 EVXDTHDQLLGVLST 441 D+ VL T Sbjct: 115 TTHDSGRTFRIVLET 129
>MTB1_HERAU (P25262) Modification methylase HgiBI (EC 2.1.1.37)| (Cytosine-specific methyltransferase HgiBI) (M.HgiBI) Length = 437 Score = 41.6 bits (96), Expect = 9e-04 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Frame = +1 Query: 37 WRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGD 216 +R ++ ++GIGG R L + G V + +I+ A VY N+ N+ +TA Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG--GVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITA-- 59 Query: 217 LDKYKAHAWXLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVG 393 + + AH + PCQP++ G + D R + ++ L+Q P+ ENV G Sbjct: 60 IQQLPAHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLVQINQ--PKAFIFENVKG 117
>MTS1_SALIN (P09795) Modification methylase SinI (EC 2.1.1.37)| (Cytosine-specific methyltransferase SinI) (M.SinI) Length = 461 Score = 41.2 bits (95), Expect = 0.001 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Frame = +1 Query: 1 SRSPKAMETPSPWRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRP 180 S S A E + + L F+SG G+ + G E + A +I+ A D N + Sbjct: 63 SYSMLASEPKNKPKALSFFSGAMGLDLGIEQAGF--ETLLASEIDKAARDTILSNRPNMA 120 Query: 181 CQGNIQTLTAGDLDKYKAHAWXLS-------PPCQPYTRQGLQKHSADARAFSFIKILSL 339 G+I+ T D+ K + PPCQ ++ G + D R FIK L + Sbjct: 121 LIGDIRDYTTEDILKLAGVSSGNEIDLIMGGPPCQAFSTAGKRLGLEDERGNVFIKYLDV 180 Query: 340 MQNMSFPPQMLFVENVVG 393 + P+ + +ENV G Sbjct: 181 A--LDIRPKYIVIENVRG 196
>MTM1_MORSP (P11408) Modification methylase MspI (EC 2.1.1.37)| (Cytosine-specific methyltransferase MspI) (M.MspI) Length = 418 Score = 40.8 bits (94), Expect = 0.002 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Frame = +1 Query: 31 SPWRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTA 210 S ++ ++ +SGIGG+R S G + V + +I+ A Y NF P G+I + A Sbjct: 103 SDFKFIDLFSGIGGIRQSFEVNG--GKCVFSSEIDPFAKFTYYTNFGVVPF-GDITKVEA 159 Query: 211 GDLDKYKAHAWXLSPPCQPYTRQGLQK-HSADARAFSFIKILSLMQNMSFPPQMLFVENV 387 + ++ PCQP++ G ++ + F +I+ +++ P +LF+ENV Sbjct: 160 TTIPQHDILCAGF--PCQPFSHIGKREGFEHPTQGTMFHEIVRIIETKKTP--VLFLENV 215 Query: 388 VGFEVXDTHDQLLGVLST 441 G D + L ++ T Sbjct: 216 PGLINHDDGNTLKVIIET 233
>MTBF_BACSU (P17044) Modification methylase BsuFI (EC 2.1.1.37)| (Cytosine-specific methyltransferase BsuFI) (M.BsuFI) Length = 409 Score = 40.0 bits (92), Expect = 0.003 Identities = 29/121 (23%), Positives = 51/121 (42%) Frame = +1 Query: 46 LEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 ++ ++GIGG+R + +D A YE N+ +P G+I + D+ Sbjct: 104 IDLFAGIGGIRLGFEDKYTKCVFSSEWD--KYAAQTYEANYGEKP-HGDITKINENDIPD 160 Query: 226 YKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEVX 405 PCQP++ G ++ A R +L +++ P+M +ENV G Sbjct: 161 QDVLLAGF--PCQPFSNIGKREGFAHERRNIIFDVLRILKKKQ--PKMFLLENVKGLLTN 216 Query: 406 D 408 D Sbjct: 217 D 217
>MTS1_STRAH (O31073) Modification methylase SacI (EC 2.1.1.37)| (Cytosine-specific methyltransferase SacI) (M.SacI) Length = 390 Score = 39.7 bits (91), Expect = 0.003 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 21/138 (15%) Frame = +1 Query: 43 VLEFYSGIGGMRYSLAS----------TGVRAEVVEAFDINDVANDVYEHNFAH-RPCQG 189 V+ +SG GG+ ++ S +G V A D A D NF H + G Sbjct: 7 VISLFSGAGGLDCAIESCAEPPLVQDGSGSPLRVAVATDYEQTALDTLSANFPHTKTLCG 66 Query: 190 NIQT------LTAGDLDKYKAHAWXLSPPCQPYTRQGL----QKHSADARAFSFIKILSL 339 +IQT L AG L PPC P+++ G +++SAD A + + + Sbjct: 67 DIQTIPTAELLEAGGLKPGDPTLVIGGPPCTPFSKSGFWIEEKRNSADPNASLLDEYVRV 126 Query: 340 MQNMSFPPQMLFVENVVG 393 ++ P+ +ENV G Sbjct: 127 VRESK--PEAFILENVQG 142
>MTF1_FUSNU (P34906) Modification methylase FnuDI (EC 2.1.1.37)| (Cytosine-specific methyltransferase FnuDI) (M.FnuDI) Length = 344 Score = 39.7 bits (91), Expect = 0.003 Identities = 27/118 (22%), Positives = 55/118 (46%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDL 219 ++L +SG GG+ G E++ A + + + YE N + + +I+ + + +L Sbjct: 2 KLLSLFSGAGGLDLGFERAGF--EIIVANEYDKTIWETYEKNHKAKLIKKDIREILSEEL 59 Query: 220 DKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVG 393 K + PPCQ ++ G + D R F + + +++++ P+ ENV G Sbjct: 60 PK--SDGIIGGPPCQSWSEAGSLRGINDPRGKLFYEYIRILKDIQ--PKFFLAENVKG 113
>MTE1_HERAU (P25266) Modification methylase HgiEI (EC 2.1.1.37)| (Cytosine-specific methyltransferase HgiEI) (M.HgiEI) Length = 437 Score = 38.9 bits (89), Expect = 0.006 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = +1 Query: 37 WRVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGD 216 +R ++ ++GIGG R L + G V + +I+ A VY N+ N+ +T Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG--GVCVASAEIDQQAIKVYWQNWPTDGVDHNLGDIT--Q 59 Query: 217 LDKYKAHAWXLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVG 393 + + AH + PCQP++ G + D R + ++ L+Q P+ ENV G Sbjct: 60 IQQLPAHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLVQINQ--PKAFIFENVKG 117
>MTP2_NEIGO (P08455) Modification methylase NgoPII (EC 2.1.1.37)| (Cytosine-specific methyltransferase NgoPII) (M.NgoPII) Length = 330 Score = 37.4 bits (85), Expect = 0.017 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDL 219 +++ +SG GG+ G +D A H H +G+I+ + D Sbjct: 2 KIISLFSGCGGLDLGFEKAGFEIPAANEYDKTIWATFKANHPKTHL-IEGDIRKIKEEDF 60 Query: 220 DKYKAHAWXLSPPCQPYTRQGLQKHSADARA---FSFIKILSLMQNMSFPPQMLFVENVV 390 + + PPCQ ++ G + DAR F +I+IL Q P+ ENV Sbjct: 61 PE-EIDGIIGGPPCQSWSEAGALRGIDDARGQLFFDYIRILKSKQ-----PKFFLAENVS 114 Query: 391 G 393 G Sbjct: 115 G 115
>MTP1_PSYTA (O33481) Modification methylase PspPI (EC 2.1.1.37)| (Cytosine-specific methyltransferase PspPI) (M.PspPI) Length = 416 Score = 36.6 bits (83), Expect = 0.028 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 13/144 (9%) Frame = +1 Query: 16 AMETPSPWRVLEFYSGIGGMRYSLASTGVRAEVVEAFDI-------------NDVANDVY 156 A+E + ++E ++G GG+ L G ++ ++ D N + +D+ Sbjct: 70 AVEPSRSYSLVELFAGAGGLALGLEQAGFKSVLLNEKDKYACATLRANRPNWNVIEDDIE 129 Query: 157 EHNFAHRPCQGNIQTLTAGDLDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILS 336 +F H G + LT G PCQP++ G Q D R ++ Sbjct: 130 NVDFTH--LNGKVDLLTGGF-------------PCQPFSYAGKQLGFEDLRGTLVFEMAR 174 Query: 337 LMQNMSFPPQMLFVENVVGFEVXD 408 ++ + P++ ENV G D Sbjct: 175 AIKEIK--PKVFLAENVKGLAEND 196
>MTH3_HAEAE (P20589) Modification methylase HaeIII (EC 2.1.1.37)| (Cytosine-specific methyltransferase HaeIII) (M.HaeIII) Length = 330 Score = 35.4 bits (80), Expect = 0.063 Identities = 26/117 (22%), Positives = 50/117 (42%) Frame = +1 Query: 43 VLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLD 222 ++ +SG GG+ G R ++ A + + YE N + + +G+I +++ + Sbjct: 3 LISLFSGAGGLDLGFQKAGFR--IICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFP 60 Query: 223 KYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVG 393 K PPCQ ++ G + D R F + + +++ P ENV G Sbjct: 61 KCDGIIG--GPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKK--PIFFLAENVKG 113
>MTE8_ECOLI (P50196) Modification methylase Eco47II (EC 2.1.1.37)| (Cytosine-specific methyltransferase Eco47II) (M.Eco47II) Length = 417 Score = 35.0 bits (79), Expect = 0.083 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Frame = +1 Query: 37 WRVLEFYSGIGGMRYSLASTGVRAEVVEAFDI-------------NDVANDVYEHNFAHR 177 + VLE ++G GGM L G+++ ++ D N V DV + +F Sbjct: 81 YTVLELFAGAGGMALGLEKAGLKSVLLNEIDSHACKTLRKNRPEWNVVEGDVSQVDFT-- 138 Query: 178 PCQGNIQTLTAGDLDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSF 357 P + + L G PCQ ++ G + D R F + + ++ Sbjct: 139 PYRNTVDVLAGGF-------------PCQAFSYAGKKLGFEDTRGTLFFEFARAAKEIN- 184 Query: 358 PPQMLFVENVVG 393 P++L ENV G Sbjct: 185 -PKVLLAENVRG 195
>MTH5_HAEIN (P45000) Modification methylase HindV (EC 2.1.1.37)| (Cytosine-specific methyltransferase HindV) (M.HindV) Length = 304 Score = 34.7 bits (78), Expect = 0.11 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNI--QTLTAG 213 + ++ +SG GG+ G E+ AF+ + A ++Y++NF+H ++ + Sbjct: 2 KCVDLFSGCGGLSLGFELAGF--EICAAFENWEKAIEIYKNNFSHPIYNIDLRNEKEAVE 59 Query: 214 DLDKYKAHAWXLSPPCQPYTRQGLQKHS---ADARAFSFIKILSLMQNMSFPPQMLFVEN 384 + KY PPCQ ++ G + S AD +SF I+ + P+ +EN Sbjct: 60 KIKKYSPDLIMGGPPCQDFSSAGKRDISLGRADL-TYSFANIV-----CNIRPKWFVMEN 113 Query: 385 V 387 V Sbjct: 114 V 114
>Y965_PROMA (Q7VBX7) Hypothetical RNA methyltransferase Pro_0965 (EC 2.1.1.-)| Length = 419 Score = 32.0 bits (71), Expect = 0.70 Identities = 23/64 (35%), Positives = 34/64 (53%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDL 219 R+++ YSGIG M LAS G R V +IN+ A+++ N NI+T+T + Sbjct: 275 RIIDAYSGIGTMSIPLASDGYR---VIGIEINNEAHEIAIRNAE----INNIKTITFENQ 327 Query: 220 DKYK 231 D K Sbjct: 328 DVTK 331
>MT36_OCEIH (Q8EL95) Putative modification methylase OB3336 (EC 2.1.1.37)| (Cytosine-specific methyltransferase) (M.OihORF3336P) Length = 460 Score = 32.0 bits (71), Expect = 0.70 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = +1 Query: 43 VLEFYSGIGGMR--YSLASTGVRAEVVEAFDINDVAN-DVYEHNFAH-RPCQGNIQTLTA 210 V++ +SG GG+ + LA +R + D +DVA+ +++ H R +I L+A Sbjct: 17 VVDLFSGCGGLALGFQLAGFNIRKGIELDRDASDVASFNLHWRQGKHDRHLNNDITLLSA 76 Query: 211 G----DLDKYKAHAWXLSPPCQPYTRQGLQK 291 DLD+ PPCQ Y++ G K Sbjct: 77 NEFYNDLDRKNDLIVIGGPPCQAYSKIGRAK 107
>PRMA_STRR6 (Q8DNP4) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 316 Score = 31.6 bits (70), Expect = 0.91 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N P NI + AGDL K Sbjct: 178 GTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIH-VAAGDLLK 231
>PRMA_STRPN (Q97P62) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 316 Score = 31.6 bits (70), Expect = 0.91 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N P NI + AGDL K Sbjct: 178 GTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIH-VAAGDLLK 231
>PRMA_STRA5 (Q8DX85) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N P NI + AGDL K Sbjct: 179 GTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPGTENIH-VAAGDLLK 232
>PRMA_STRA3 (Q8E307) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N P NI + AGDL K Sbjct: 179 GTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPGTENIH-VAAGDLLK 232
>MTE2_ECOLI (P05101) Modification methylase EcoRII (EC 2.1.1.37)| (Cytosine-specific methyltransferase EcoRII) (M.EcoRII) Length = 477 Score = 30.8 bits (68), Expect = 1.6 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 22/117 (18%) Frame = +1 Query: 37 WRVLEFYSGIGGMRYSLASTGVRA--------EVVEAFDINDVANDVYEHNFAHRPCQGN 192 +R ++ ++GIGG+R + G + E V + N ND EH F + Sbjct: 96 FRFIDLFAGIGGIRKGFETIGGQCVFTSEWNKEAVRTYKANWF-NDAQEHTF-----NLD 149 Query: 193 IQTLTAGD---LDKYKAHAWXLSP-----------PCQPYTRQGLQKHSADARAFSF 321 I+ +T D + + A+A+ PCQP++ G+ K ++ RA F Sbjct: 150 IREVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGF 206
>MTHT_METTF (P29567) Modification methylase MthTI (EC 2.1.1.37)| (Cytosine-specific methyltransferase MthTI) (M.MthTI) Length = 330 Score = 29.3 bits (64), Expect = 4.5 Identities = 30/124 (24%), Positives = 47/124 (37%) Frame = +1 Query: 43 VLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLD 222 + F+SG GG+ G +V A D +E N + + I+ L ++ Sbjct: 5 IASFFSGAGGLDLGFTKAGFN--IVFANDNWKGCWKTFEKNHGIKINKKPIEWLKPSEIP 62 Query: 223 KYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEV 402 PPCQ ++ G + D R +F + L++ P ENV G V Sbjct: 63 DVVGFIG--GPPCQSWSLAGSMCGADDPRGKTFYAYVDLVKEKD--PLFFLAENVPGI-V 117 Query: 403 XDTH 414 TH Sbjct: 118 SRTH 121
>MTAA_SYNP2 (P34882) Modification methylase AquI alpha subunit (EC 2.1.1.37)| (Cytosine-specific methyltransferase AquI alpha subunit) (M.AquI alpha subunit) (M.AquiA) Length = 248 Score = 29.3 bits (64), Expect = 4.5 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Frame = +1 Query: 40 RVLEFYSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPC-QGNIQTLT--- 207 +++ +SG GGM + G V A + + + N P +G+I ++T Sbjct: 4 KLISLFSGAGGMDIGFHAAGFSTAV--AVEQDPSCCNTLRLNMPDTPVIEGDITSITTQV 61 Query: 208 ---AGDLDKYKAHAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFV 378 A ++ + PPCQ ++ G + D R ++ L +++ P+ + Sbjct: 62 ILEAAKVNPLEIDLVIGGPPCQSFSLAGKRMGMDDPRGMLVLEFLRVVREAL--PKCFVM 119 Query: 379 ENVVG 393 ENV G Sbjct: 120 ENVKG 124
>PRMA_STRP8 (Q8NZ98) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N NI + AGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIH-VAAGDLLK 232
>PRMA_STRP6 (Q5X9S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N NI + AGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIH-VAAGDLLK 232
>PRMA_STRP3 (Q8K5Q9) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N NI + AGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIH-VAAGDLLK 232
>LPXC_RICTY (Q68XB5) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine| deacetylase (EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc deacetylase) Length = 289 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 274 RQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEVXDTHDQLL 426 ++ K+ ADAR F FIK + +++ F EN +G D HD++L Sbjct: 176 QESFTKNIADARTFGFIKDVEYLKSKGLAQGASF-ENAIGI---DEHDKVL 222
>PRMA_STRP1 (Q99XW8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N NI + AGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQDNIDLNQGTDNIH-VAAGDLLK 232
>PRMA_STRMU (Q8DS02) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 61 GIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDK 225 G G S+AS+ + A+ + A+D++DVA V + N NI +TAGDL K Sbjct: 179 GTGSGVLSVASSLLGAKEIFAYDLDDVAVRVAQENIDLNVGTENIH-VTAGDLLK 232
>ESR1_ICTPU (Q9YHZ7) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 617 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = +1 Query: 262 QPYTRQGLQKHSADARAFSFIKILSLMQNMS---FPPQMLFVENVVGFEVXDTHDQL 423 +P T QKHS R +S + I+SL+ NM+ + + + V GF+ HDQ+ Sbjct: 328 EPPTLCSRQKHS---RPYSELTIMSLLTNMADRELVHMIAWAKKVPGFQDLSLHDQV 381
>UBP5_SCHPO (Q09879) Probable ubiquitin carboxyl-terminal hydrolase 5 (EC| 3.1.2.15) (Ubiquitin thioesterase 5) (Ubiquitin-specific processing protease 5) (Deubiquitinating enzyme 5) Length = 1108 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 23/70 (32%) Frame = +3 Query: 252 SSMSTIHTARTSEALS*CP------------GLFIYKDFKP-----------YAKHELSS 362 S T+H ++ E S CP L IY++ KP + + ELS+ Sbjct: 712 SGCGTLHVNKSDEIRSICPLLCERANLPKNTPLNIYEEIKPGMVDFLRLEKTFTQSELST 771 Query: 363 TNVICGECCR 392 ++IC E CR Sbjct: 772 GDIICFEPCR 781
>SYJ1_SCHPO (O43001) Synaptojanin homolog 1 (EC 3.1.3.36)| (Inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1076 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/100 (22%), Positives = 38/100 (38%) Frame = +1 Query: 55 YSGIGGMRYSLASTGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLTAGDLDKYKA 234 Y+G G ++ S G + D++ +Y +NF + Q I L +D+ Sbjct: 472 YTGTGALKSSFTRKGKLSIAGALNDLSKSVGRMYINNFQDKGRQETIDLLLGRLIDQ--- 528 Query: 235 HAWXLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMS 354 H L P Y L+K + +KI N++ Sbjct: 529 HPVILYDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLN 568 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,756,649 Number of Sequences: 219361 Number of extensions: 1018103 Number of successful extensions: 2639 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 2597 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2629 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
