>IF3X_DICDI (O15818) Putative eukaryotic translation initiation factor 3 subunit|
            (eIF-3)
          Length = 1321

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
 Frame = +1

Query: 19   KDSTSLNTNDAHSDTTASTKEDKEAILQKALTEAAFQRLKESETGLHAKSPDELIEMAYK 198
            K+     T  A  +    T+ED       +     F ++K   T    +   E ++    
Sbjct: 693  KEGIDPPTATARDEDVQLTEEDLAQSPVVSFNPNLFSKVKLGGTPEEQQKDIEDLKAIGA 752

Query: 199  YYDDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSLGQVVE-LSDKLPHIQSLCI 375
            +     +P+L+ D     ++PVDG+TLT  MH RG+ MR LG + +  S  +P IQ L  
Sbjct: 753  FLKGILIPRLIEDLMLFNVAPVDGQTLTQVMHVRGINMRYLGYIAKNESANVPFIQDLLF 812

Query: 376  HEMVVRAFKHIVRAVIASVDDINDMAQSVASCLNILLG 489
            +EMV RA KH    ++ S  + +DMA S++  LN  LG
Sbjct: 813  NEMVSRAAKHCFNRLLRST-NASDMAHSISHFLNCFLG 849

>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3 subunit|
            (eIF-3)
          Length = 1309

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
 Frame = +1

Query: 175  ELIEMAYKYYDDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSLGQVVEL----- 339
            +L++ A  +     +P LV D     + PVDG TL + M  RG+ MR LG+V+EL     
Sbjct: 741  QLLKDAAAFLLSCQIPGLVKDCMEHAVLPVDGATLAEVMRQRGINMRYLGKVLELVLRSP 800

Query: 340  -SDKLPHIQSLCIHEMVVRAFKHIVRAVIASVDDINDMAQSVASCLNILLGPFP 498
               +L H+  + I E++ R+ KHI +  +  V +++ ++ +++  LN  L  +P
Sbjct: 801  ARHQLDHVFKIGIGELITRSAKHIFKTYLQGV-ELSGLSAAISHFLNCFLSSYP 853

>IF3X_CAEEL (P34466) Putative eukaryotic translation initiation factor 3 subunit|
            (eIF-3)
          Length = 1247

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
 Frame = +1

Query: 166  SPDELIEMAYKYYDDTA-------LPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSLG 324
            +P E +E   +   D A       +P+LV +     + P+DG  L D MH  G+ +R LG
Sbjct: 709  APTENLERQRRVVVDAADFLLTQKIPELVQNLKDCVVQPIDGDNLADIMHINGINIRYLG 768

Query: 325  QV-VELSDKLPHIQSLCIHEMVVRAFKHIVRAVIASV--DDINDMAQSVASCL-NILLGP 492
            ++   L + +   + L + ++V R+ KH++R +   +  D ++     + +CL +++L P
Sbjct: 769  EIGKRLENSVSFARPLVLSDIVARSAKHVIRKINVQITADQLSASTSHILNCLFSVVLDP 828

Query: 493  FPEENNDGKCGEDHNLRQK 549
             P   N  K     N +++
Sbjct: 829  SPIAANVAKKANKKNGKKR 847

>IF3X_SCHPO (O59742) Probable eukaryotic translation initiation factor 3 135|
           kDa subunit (eIF3 p135) (Translation initiation factor
           eIF3, p135 subunit)
          Length = 1173

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
 Frame = +1

Query: 172 DELIEMAY---KYYDDTALPKLVADFGS-LELSPVDGRTLTDFMHTRGLQMRSLGQVVE- 336
           D+ IE +Y   +Y     +P  V          P+DG  L   MH  G+ +R LG++   
Sbjct: 674 DKDIENSYALSQYLHAEVIPNFVKSLSEPSSFLPIDGVALCRAMHRSGINIRYLGEIANI 733

Query: 337 LSDKLPH---IQSLCIHEMVVRAFKHIVRAVIASVDDI 441
           +  K P+   +  L   E+ +R+ KH+ R  +A V  +
Sbjct: 734 ILQKSPNNVILLKLVTSEIFIRSIKHVFRNFLAVVPQV 771

>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 34.7 bits (78), Expect = 0.18
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 371 HSDCMCGSLSESSTTCPSERI----WRPLVCMKSVNVLPST 261
           + DCMC +LS  +  C ++ +    WR  VC K V+  PS+
Sbjct: 621 NEDCMCAALSSYARACAAKGVMLWGWRESVCNKDVHACPSS 661

>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja|
           UDPGD intein]
          Length = 895

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/66 (27%), Positives = 36/66 (54%)
 Frame = +1

Query: 154 LHAKSPDELIEMAYKYYDDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSLGQVV 333
           L+ K P E++E  YKY+ D  +P ++ ++ + EL          F+ T+   +  + ++ 
Sbjct: 170 LNNKKPIEIMEEVYKYFKDKNIPFVITNWETAELIKYASNA---FLATK---ISFINELA 223

Query: 334 ELSDKL 351
           +LSDK+
Sbjct: 224 KLSDKV 229

>YAB9_YEAST (P31380) Hypothetical 128.5 kDa ATP-dependent helicase in ATS1-TPD3|
           intergenic region (EC 3.6.1.-)
          Length = 1131

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +1

Query: 7   NASTKDSTSLNTNDAHSDTTASTKEDKEAILQKALTEAAFQRLKESETGLHAKSPDELIE 186
           + +  ++ S N N A +D T+  KED +A+++       F       T   A +P   +E
Sbjct: 414 DGNNDNNNSNNNNTAGADATSKEKEDTKAVVE------GFDETSAEPTPAPAPAP---VE 464

Query: 187 MAYKYYDDTALPKLVAD 237
              K   +T  PK+V D
Sbjct: 465 RETKRIRNTTKPKVVED 481

>MDR1_RAT (P43245) Multidrug resistance protein 1 (EC 3.6.3.44)|
           (P-glycoprotein 1) (CD243 antigen)
          Length = 1277

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
 Frame = +1

Query: 190 AYKYYDDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSLGQVVELSDKLPHIQSL 369
           AY+   DT   +L ++      SP+  R++   +H R  Q R L    ++ + +P +   
Sbjct: 640 AYESQSDTGASELTSEESK---SPLIRRSIRRSIHRRQDQERRLSSKEDVDEDVPMVSFW 696

Query: 370 CIHEMVVRAFKHIVRAVIASVDDINDMAQSV-ASCLNILLGPFPEENNDGKCGEDHNLRQ 546
            I ++ +  + ++V  V+ +V  IN   Q V A   + ++G F  +       +DH  +Q
Sbjct: 697 QILKLNISEWPYLVVGVLCAV--INGCIQPVFAIVFSKIVGVFSRD-------DDHETKQ 747

Query: 547 K 549
           +
Sbjct: 748 R 748

>PALY_AMAMU (O93967) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 740

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 292 HTRGLQMRSLGQVVELSDKLPHIQSLCIHEMVVRAFKHI-VRAVIASVDDINDMAQSVAS 468
           H +GL + +   V E +    HIQS  +H   V +   I  RA I S++ +  +   +AS
Sbjct: 482 HAKGLDIATAAYVAEATPGPTHIQSAEMHNQAVNSLALISARATITSLEVLTSL---IAS 538

Query: 469 CLNIL 483
            L IL
Sbjct: 539 YLYIL 543

>NADE2_THEMA (Q9X0Y0) Probable glutamine-dependent NAD(+) synthetase (EC|
           6.3.5.1) (NAD(+) synthase [glutamine-hydrolyzing])
          Length = 576

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 367 VTVCAGAYQKAQPLVPVSASGGLWCA*NLSMSFHQQGKAQVSQSLLPILAGQYH 206
           VT+C   +   +P   +S   G+    NLS S +  GK  + +  L + A  YH
Sbjct: 145 VTICEDIWNPVEPSASLSLGEGVHLIANLSASPYHVGKPVLRKDYLSMKAYDYH 198

>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)|
          Length = 205

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +1

Query: 58  DTTASTKEDKEAILQKALTEAAFQRLKESETGLHAKSPDELIEMAYKYYDDTALPKLVAD 237
           D   +  ++KE    +   E +  ++++  T +      + I +  K  D+   P L+AD
Sbjct: 99  DIITAVIDEKETTAARIAAEISEAQIRKPLTNV------QKIALIQKVLDEEVRPVLIAD 152

Query: 238 FGSLELSPVDG 270
            G +EL  VDG
Sbjct: 153 GGDVELYDVDG 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.130    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,388,203
Number of Sequences: 219361
Number of extensions: 1502419
Number of successful extensions: 3174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3172
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)