ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basdd20 | 580 | AV925893 | not_full | dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 | 16 | not_full | TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA) (Major surface antigen) Length = 1162 | 114 | -- | --- | - | -- | --- | - |
| basdd19 | 612 | AV925892 | not_full | ref|NM_190595.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1086 | 65 | not_full | MPG1_SCHPO (O74484) Probable mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (GTP-mannose-1-phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) Length = 363 | 304 | -- | --- | - | -- | --- | - |
| basdd17 | 455 | AV925891 | not_full | gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 | 500 | not_full | CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP) Length = 267 | 121 | -- | --- | - | -- | --- | - |
| basdd16 | 544 | AV925890 | not_full | gb|AY107912.1| Zea mays PCO105578 mRNA sequence Length = 749 | 500 | not_full | CYB5_ORYSA (P49100) Cytochrome b5 Length = 137 | 101 | -- | --- | - | -- | --- | - |
| basdd15 | 536 | AV925889 | full | emb|Y14200.1|HVY14200 Hordeum vulgare mRNA for 14-3-3 protein (Hv1433c) Length = 1155 | 500 | not_full | 1433B_HORVU (Q43470) 14-3-3-like protein B (14-3-3B) Length = 262 | 178 | -- | --- | - | -- | --- | - |
| basdd13 | 631 | AV925888 | not_full | emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 | 150 | full | DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 | 27 | -- | --- | - | -- | --- | - |
| basdd12 | 464 | AV925887 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | POF13_SCHPO (O94334) F-box protein pof13 Length = 396 | 10 | -- | --- | - | -- | --- | - |
| basdd11 | 299 | AV925886 | not_full | gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 | 40 | full | ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein At2g36320 Length = 161 | 21 | -- | --- | - | -- | --- | - |
| basdd10 | 575 | AV925885 | full | gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds; nuclear gene for chloroplast product Length = 481 | 347 | not_full | PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor Length = 140 | 16 | -- | --- | - | -- | --- | - |
| basdd09 | 529 | AV925884 | not_full | dbj|AK111642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121E16, full insert sequence Length = 1526 | 72 | not_full | PEX2_ARATH (Q9CA86) Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p) Length = 333 | 12 | -- | --- | - | -- | --- | - |
| basdd08 | 547 | AV925883 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP | 11 | -- | --- | - | -- | --- | - |
| basdd07 | 477 | AV925882 | not_full | gb|AY108278.1| Zea mays PCO119899 mRNA sequence Length = 1540 | 31 | not_full | EPAS1_MOUSE (P97481) Endothelial PAS domain-containing protein 1 (EPAS-1) (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like factor) (MHLF) (HIF-related factor) (HRF) Length = 874 | 20 | -- | --- | - | -- | --- | - |
| basdd06 | 489 | AV925881 | not_full | gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 | 500 | not_full | CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP) Length = 267 | 116 | -- | --- | - | -- | --- | - |
| basdd05 | 456 | AV925880 | not_full | dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence Length = 1002 | 20 | not_full | MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12A (Myosin phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) (Protein phosphatase myosin-binding subunit) Length = 1030 | 20 | -- | --- | - | -- | --- | - |
| basdd02 | 496 | AV925879 | not_full | gb|AY104700.1| Zea mays PCO101905 mRNA sequence Length = 1777 | 50 | not_full | SLT11_CRYNE (Q5KND3) Pre-mRNA-splicing factor SLT11 Length = 326 | 14 | -- | --- | - | -- | --- | - |
| basdd01 | 672 | AV925878 | full | emb|Z23130.1|HVBLT63A H.vulgare BLT63 mRNA, complete CDS Length = 1560 | 500 | full | EF1A_LYCES (P17786) Elongation factor 1-alpha (EF-1-alpha) Length = 448 | 500 | -- | --- | - | -- | --- | - |
| basdc24 | 478 | AV925877 | not_full | gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 | 55 | not_full | ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein At2g36320 Length = 161 | 35 | -- | --- | - | -- | --- | - |
| basdc23 | 470 | AV925876 | not_full | gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 | 55 | not_full | ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein At2g36320 Length = 161 | 35 | -- | --- | - | -- | --- | - |
| basdc22 | 470 | AV925875 | not_full | emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA Length = 502 | 40 | not_full | CYSZ_VIBCH (Q9KTD3) Protein cysZ homolog Length = 250 | 21 | -- | --- | - | -- | --- | - |
| basdc21 | 405 | AV925874 | not_full | emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b Length = 1013 | 299 | not_full | CHIB_LYCES (Q05540) Acidic 27 kDa endochitinase precursor (EC 3.2.1.14) Length = 247 | 67 | -- | --- | - | -- | --- | - |
| basdc20 | 647 | AV925873 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basdc18 | 503 | AV925872 | not_full | dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence Length = 1002 | 22 | not_full | Y1739_STRPN (P67282) UPF0144 protein SP1739 Length = 534 | 54 | -- | --- | - | -- | --- | - |
| basdc17 | 471 | AV925871 | not_full | emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 | 20 | not_full | HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 Length = 863 | 21 | -- | --- | - | -- | --- | - |
| basdc16 | 388 | AV925870 | not_full | gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2553 | 499 | not_full | HSP83_ORYSA (Q07078) Heat shock protein 81-3 (HSP81-3) (Gravity-specific protein GSC 381) Length = 699 | 181 | -- | --- | - | -- | --- | - |
| basdc15 | 595 | AV925869 | not_full | gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2553 | 500 | not_full | HSP83_ORYSA (Q07078) Heat shock protein 81-3 (HSP81-3) (Gravity-specific protein GSC 381) Length = 699 | 184 | -- | --- | - | -- | --- | - |
| basdc14 | 587 | AV925868 | not_full | gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 | 47 | not_full | IAAS_HORVU (P07596) Alpha-amylase/subtilisin inhibitor precursor (BASI) Length = 203 | 5 | -- | --- | - | -- | --- | - |
| basdc12 | 432 | AV925867 | not_full | gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor protein mRNA, complete cds Length = 866 | 107 | not_full | UCRIA_WHEAT (Q7X9A6) Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (EC 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) Length = 222 | 115 | -- | --- | - | -- | --- | - |
| basdc11 | 484 | AV925866 | not_full | gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor protein mRNA, complete cds Length = 866 | 107 | not_full | UCRIA_WHEAT (Q7X9A6) Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (EC 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) Length = 222 | 115 | -- | --- | - | -- | --- | - |
| basdc10 | 528 | AV925865 | not_full | ref|NM_190764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1995 | 170 | not_full | PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3 Length = 432 | 57 | -- | --- | - | -- | --- | - |
| basdc07 | 265 | AV925864 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_AEGTA (P25414) Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 421 | 500 | -- | --- | - | -- | --- | - |
| basdc06 | 529 | AV925863 | not_full | emb|X69422.1|AFTETUBI A.fatua mRNA for tetraubiquitin Length = 1196 | 500 | not_full | UBIQ_WHEAT (P69326) Ubiquitin Length = 76 | 211 | -- | --- | - | -- | --- | - |
| basdc05 | 459 | AV925862 | not_full | dbj|AK067302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102H14, full insert sequence Length = 3100 | 28 | not_full | IE62_VZVD (P09310) Transcriptional transactivator IE62 (Immediate-early protein 62) (IE62) Length = 1310 | 1 | -- | --- | - | -- | --- | - |
| basdc03 | 305 | AV925861 | not_full | emb|AL590293.3| Human DNA sequence from clone RP11-227B10 on chromosome Xq21.33-22.3, complete sequence Length = 67911 | 27 | not_full | DYI2_ANTCR (Q16959) Dynein intermediate chain 2, ciliary Length = 702 | 53 | -- | --- | - | -- | --- | - |
| basdc02 | 523 | AV925860 | not_full | dbj|AK063845.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C05, full insert sequence Length = 715 | 88 | not_full | NUGC_ADICA (Q85FL7) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 170 | 8 | -- | --- | - | -- | --- | - |
| basdb24 | 506 | AV925859 | full | dbj|D01000.1|RICSODB Oryza sativa mRNA for copper/zinc-superoxide dismutase, complete cds, clone:RSODB Length = 667 | 273 | full | SODC4_MAIZE (P23345) Superoxide dismutase [Cu-Zn] 4A (EC 1.15.1.1) Length = 151 | 226 | -- | --- | - | -- | --- | - |
| basdb22 | 558 | AV925858 | not_full | dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 | 38 | not_full | E74EF_DROVI (Q7M3M6) Ecdysone-induced protein 74EF (ETS-related protein E74A) Length = 873 | 3 | -- | --- | - | -- | --- | - |
| basdb21 | 590 | AV925857 | not_full | dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 | 42 | not_full | E74EF_DROVI (Q7M3M6) Ecdysone-induced protein 74EF (ETS-related protein E74A) Length = 873 | 3 | -- | --- | - | -- | --- | - |
| basdb20 | 592 | AV836575 | not_full | dbj|AK102763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D14, full insert sequence Length = 1890 | 396 | not_full | AVT1_YEAST (P47082) Vacuolar amino acid transporter 1 Length = 602 | 10 | -- | --- | - | -- | --- | - |
| basdb19 | 653 | AV925856 | not_full | ref|NM_202054.1| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome AT1G07770 (RPS15A) transcript variant AT1G07770.2 mRNA, complete cds Length = 651 | 500 | not_full | RS15A_ARATH (P42798) 40S ribosomal protein S15a Length = 129 | 327 | -- | --- | - | -- | --- | - |
| basdb18 | 289 | AV925855 | not_full | gb|BT017005.1| Zea mays clone EK07D2310A10.c mRNA sequence Length = 1053 | 51 | full | CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog associated with Alix-2) Length = 222 | 14 | -- | --- | - | -- | --- | - |
| basdb17 | 477 | AV925854 | not_full | gb|BT017005.1| Zea mays clone EK07D2310A10.c mRNA sequence Length = 1053 | 88 | not_full | CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b (Chromatin-modifying protein 4b) (CHMP4b) Length = 220 | 38 | -- | --- | - | -- | --- | - |
| basdb14 | 656 | AV925853 | not_full | gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependent asparagine synthetase 1 mRNA, complete cds Length = 1973 | 207 | not_full | ASNS_SANAU (O24338) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 524 | 37 | -- | --- | - | -- | --- | - |
| basdb13 | 170 | AV925852 | not_full | gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependent asparagine synthetase 1 mRNA, complete cds Length = 1973 | 104 | not_full | ASNS_TRIVS (O24661) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 585 | 16 | -- | --- | - | -- | --- | - |
| basdb11 | 481 | AV925851 | full | gb|AY736124.1| Triticum aestivum ADP-ribosylation factor mRNA, complete cds Length = 583 | 500 | not_full | ARF_MAIZE (P49076) ADP-ribosylation factor Length = 180 | 500 | -- | --- | - | -- | --- | - |
| basdb10 | 373 | AV925850 | not_full | gb|DQ019626.1| Triticum aestivum pre-mRNA processing factor (RSZ22) mRNA, complete cds Length = 940 | 25 | not_full | MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial) (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 | 1 | -- | --- | - | -- | --- | - |
| basdb09 | 409 | AV925849 | not_full | ref|XM_478366.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3720 | 26 | not_full | BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing FSH-like protein FSRG2) Length = 726 | 33 | -- | --- | - | -- | --- | - |
| basdb07 | 619 | AV925848 | not_full | dbj|AK121844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101G01, full insert sequence Length = 924 | 82 | not_full | KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-associated protein 15.1) Length = 136 | 3 | -- | --- | - | -- | --- | - |
| basdb06 | 497 | AV925847 | not_full | ref|XM_470823.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1939 | 62 | full | DNAJ2_THET8 (Q56237) Chaperone protein dnaJ 2 Length = 280 | 110 | -- | --- | - | -- | --- | - |
| basdb05 | 455 | AV925846 | not_full | ref|XM_470823.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1939 | 55 | full | DNAJ2_THET8 (Q56237) Chaperone protein dnaJ 2 Length = 280 | 117 | -- | --- | - | -- | --- | - |
| basdb04 | 615 | AV925845 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 3 | -- | --- | - | -- | --- | - |
