ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdc18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence Length = 1002 Score = 303 bits (153), Expect = 3e-79 Identities = 276/317 (87%) Strand = Plus / Plus Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 252 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 311 Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 312 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 371 Query: 305 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 364 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 372 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 431 Query: 365 gaccagataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatg 424 ||||||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | Sbjct: 432 gaccagataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagtt 491 Query: 425 caaaggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaa 484 ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || Sbjct: 492 caaaggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgag 551 Query: 485 gaggagaaaaacgaagg 501 |||||||||| ||||| Sbjct: 552 aaggagaaaaatgaagg 568
>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence Length = 768 Score = 272 bits (137), Expect = 1e-69 Identities = 245/281 (87%) Strand = Plus / Minus Query: 199 ccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaaggtccggatcacaaa 258 |||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| | Sbjct: 569 ccagcaggaggttcttgcacagatcgccatgcttcagacgcagaaggtgcgcatcacaga 510 Query: 259 cttcctggacgagcggtctgcttacctgaccaagttcaccaaggacgccgacaccgagtt 318 |||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||||| Sbjct: 509 cttcttggacgagcgctctgcttacctgaccaagttcgccaaggacgccgactcggagtt 450 Query: 319 cgacatgattgggcagaacgccatgaaagagctcgatcaaattggggaccagataatgga 378 |||| ||||||||||||||||||||||||| || ||| |||| ||||||||| |||| Sbjct: 449 cgacctgattgggcagaacgccatgaaagaacttgatgccgttggtgaccagatactgga 390 Query: 379 gcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaaggcaggagat 438 | | ||||||||||||||||| ||| ||||||||| ||||| | ||| |||| ||||| Sbjct: 389 gaggctcgacagcaagatgcaagccttcgaggagacggctgaggtacaacggcaagagat 330 Query: 439 agaaatgaatgagagagtgttagaagacttcgaagactgga 479 ||||||||| || | |||||||| |||||||||||||||| Sbjct: 329 agaaatgaacgataaggtgttagaggacttcgaagactgga 289
>ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 597 Score = 268 bits (135), Expect = 2e-68 Identities = 240/275 (87%) Strand = Plus / Plus Query: 227 atgcttcagacgcagaaggtccggatcacaaacttcctggacgagcggtctgcttacctg 286 ||||||||| |||||||||| || ||||||| |||| |||||||||| |||||||||||| Sbjct: 1 atgcttcaggcgcagaaggtgcgcatcacaagcttcttggacgagcgctctgcttacctg 60 Query: 287 accaagttcaccaaggacgccgacaccgagttcgacatgattgggcagaacgccatgaaa 346 |||||||| | ||||| || |||||||||||||| ||||||| ||||||||||||||| Sbjct: 61 accaagtttgcgaaggatgcggacaccgagttcgatctgattggccagaacgccatgaaa 120 Query: 347 gagctcgatcaaattggggaccagataatggagcgtctcgacagcaagatgcagtcctac 406 ||||| ||| || |||||||||||||||||||| | || ||||||||||||||| ||| Sbjct: 121 gagcttgatgaagttggggaccagataatggagaggctggacagcaagatgcaggccttt 180 Query: 407 gaggagacagctgaaatgcaaaggcaggagatagaaatgaatgagagagtgttagaagac 466 |||||||| |||||| | ||||||||||||||||||||||| ||||| ||| | |||||| Sbjct: 181 gaggagactgctgaagttcaaaggcaggagatagaaatgaacgagagggtgcttgaagac 240 Query: 467 ttcgaagactggatcgaagaggagaaaaacgaagg 501 |||||||| ||||| || |||||||||| ||||| Sbjct: 241 ttcgaagattggattgagaaggagaaaaatgaagg 275
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 186 bits (94), Expect = 5e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 36730209 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 36730150 Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 36730149 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 36730090 Query: 305 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 364 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 36730089 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 36730030 Query: 365 gaccag 370 |||||| Sbjct: 36730029 gaccag 36730024 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 36729952 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 36729893 Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 36729892 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 36729833 Query: 489 agaaaaacgaagg 501 ||||||| ||||| Sbjct: 36729832 agaaaaatgaagg 36729820
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 186 bits (94), Expect = 5e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 56524 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 56465 Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 56464 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 56405 Query: 305 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 364 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 56404 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 56345 Query: 365 gaccag 370 |||||| Sbjct: 56344 gaccag 56339 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 56267 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 56208 Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 56207 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 56148 Query: 489 agaaaaacgaagg 501 ||||||| ||||| Sbjct: 56147 agaaaaatgaagg 56135
>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full insert sequence Length = 3098 Score = 137 bits (69), Expect = 4e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2645 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2586 Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2585 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2526 Query: 305 gccgacaccgagttcga 321 || |||||||||||||| Sbjct: 2525 gcggacaccgagttcga 2509 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2482 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2423 Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 2422 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2363 Query: 489 agaaaaacgaagg 501 ||||||| ||||| Sbjct: 2362 agaaaaatgaagg 2350
>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full insert sequence Length = 3051 Score = 137 bits (69), Expect = 4e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2609 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2550 Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2549 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2490 Query: 305 gccgacaccgagttcga 321 || |||||||||||||| Sbjct: 2489 gcggacaccgagttcga 2473 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2461 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2402 Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 2401 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2342 Query: 489 agaaaaacgaagg 501 ||||||| ||||| Sbjct: 2341 agaaaaatgaagg 2329
>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence Length = 113095 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 cctgaccaagttcaccaaggac 304 |||||||||||||||||||||| Sbjct: 38417 cctgaccaagttcaccaaggac 38396
>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence Length = 194060 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 cctgaccaagttcaccaaggac 304 |||||||||||||||||||||| Sbjct: 41344 cctgaccaagttcaccaaggac 41365
>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183, complete sequence Length = 70173 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 cagcaggaggtgcttgcaaaaa 221 |||||||||||||||||||||| Sbjct: 15867 cagcaggaggtgcttgcaaaaa 15888
>ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 ggaccagataatggagcgtctcga 387 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 ggaccagataatggagcgtctcga 387 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence Length = 183075 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tgcagtgcatcaaagcagga 122 |||||||||||||||||||| Sbjct: 171766 tgcagtgcatcaaagcagga 171785
>ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10760.1) partial mRNA Length = 2469 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caagagcagctccgaagatg 158 |||||||||||||||||||| Sbjct: 1996 caagagcagctccgaagatg 1977
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 cggcggtgaccaacgccagcagga 207 |||||||||||| ||||||||||| Sbjct: 2704598 cggcggtgaccagcgccagcagga 2704621
>gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete sequence Length = 201643 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 cagtgcatcaaagcaggaggagat 128 ||||| |||||||||||||||||| Sbjct: 117112 cagtgaatcaaagcaggaggagat 117135
>gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of the complete genome Length = 13785 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gaccaagttcaccaaggacgccga 309 ||||||||||| |||||||||||| Sbjct: 4339 gaccaagttcagcaaggacgccga 4362
>gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, complete sequence Length = 67392 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 gccagcaggaggtgcttgcaaaaa 221 ||||||||| |||||||||||||| Sbjct: 59334 gccagcaggtggtgcttgcaaaaa 59357
>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence Length = 132644 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 tcgaagaggagaaaaacgaaggca 503 |||||||||||||||| ||||||| Sbjct: 6519 tcgaagaggagaaaaaagaaggca 6542
>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence Length = 168538 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 71 ccctcgccgcgcagatcctccccgcgcc 98 ||||| ||||||||| |||||||||||| Sbjct: 138979 ccctccccgcgcagaccctccccgcgcc 139006
>gb|U51003.1|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds Length = 3202 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 tcgaagaggagaaaaacgaaggca 503 |||||||||||||||| ||||||| Sbjct: 2515 tcgaagaggagaaaaaagaaggca 2492
>dbj|AB208823.1| Homo sapiens mRNA for distal-less homeo box 2 variant protein Length = 3163 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 tcgaagaggagaaaaacgaaggca 503 |||||||||||||||| ||||||| Sbjct: 1604 tcgaagaggagaaaaaagaaggca 1581 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,684,018 Number of Sequences: 3902068 Number of extensions: 3684018 Number of successful extensions: 76993 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76882 Number of HSP's gapped (non-prelim): 110 length of query: 503 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 481 effective length of database: 17,147,199,772 effective search space: 8247803090332 effective search space used: 8247803090332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
