Clone Name
basdc18
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clon...
303
3e-79
2 gb|AY112109.1| Zea mays CL26172_1 mRNA sequence
272
1e-69
3 ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predic...
268
2e-68
4 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
186
5e-44
5 dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D...
186
5e-44
6 dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clon...
137
4e-29
7 dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clon...
137
4e-29
8 gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, com...
44
0.44
9 gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome...
44
0.44
10 dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone...
44
0.44
11 ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (N...
40
6.8
12 ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (N...
40
6.8
13 gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c...
40
6.8
14 ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical ...
40
6.8
15 gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
40
6.8
16 gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, ...
40
6.8
17 gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of...
40
6.8
18 gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, comple...
40
6.8
19 gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, comple...
40
6.8
20 gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, com...
40
6.8
21 gb|U51003.1|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds
40
6.8
22 dbj|AB208823.1| Homo sapiens mRNA for distal-less homeo box 2 va...
40
6.8
>dbj| AK099561.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full
insert sequence
Length = 1002
Score = 303 bits (153), Expect = 3e-79
Identities = 276/317 (87%)
Strand = Plus / Plus
Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244
||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 252 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 311
Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304
|| || ||||||| |||| |||||||||| |||||||||||||||||||| | |||||
Sbjct: 312 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 371
Query: 305 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 364
|| |||||||||||||| ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 372 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 431
Query: 365 gaccagataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatg 424
||||||||||||||| | || ||||||||||||||| ||| |||||||| |||||| |
Sbjct: 432 gaccagataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagtt 491
Query: 425 caaaggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaa 484
||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||
Sbjct: 492 caaaggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgag 551
Query: 485 gaggagaaaaacgaagg 501
|||||||||| |||||
Sbjct: 552 aaggagaaaaatgaagg 568
>gb| AY112109.1 | Zea mays CL26172_1 mRNA sequence
Length = 768
Score = 272 bits (137), Expect = 1e-69
Identities = 245/281 (87%)
Strand = Plus / Minus
Query: 199 ccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaaggtccggatcacaaa 258
|||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| |
Sbjct: 569 ccagcaggaggttcttgcacagatcgccatgcttcagacgcagaaggtgcgcatcacaga 510
Query: 259 cttcctggacgagcggtctgcttacctgaccaagttcaccaaggacgccgacaccgagtt 318
|||| |||||||||| ||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 509 cttcttggacgagcgctctgcttacctgaccaagttcgccaaggacgccgactcggagtt 450
Query: 319 cgacatgattgggcagaacgccatgaaagagctcgatcaaattggggaccagataatgga 378
|||| ||||||||||||||||||||||||| || ||| |||| ||||||||| ||||
Sbjct: 449 cgacctgattgggcagaacgccatgaaagaacttgatgccgttggtgaccagatactgga 390
Query: 379 gcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaaggcaggagat 438
| | ||||||||||||||||| ||| ||||||||| ||||| | ||| |||| |||||
Sbjct: 389 gaggctcgacagcaagatgcaagccttcgaggagacggctgaggtacaacggcaagagat 330
Query: 439 agaaatgaatgagagagtgttagaagacttcgaagactgga 479
||||||||| || | |||||||| ||||||||||||||||
Sbjct: 329 agaaatgaacgataaggtgttagaggacttcgaagactgga 289
>ref| NM_190643.1 | Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 597
Score = 268 bits (135), Expect = 2e-68
Identities = 240/275 (87%)
Strand = Plus / Plus
Query: 227 atgcttcagacgcagaaggtccggatcacaaacttcctggacgagcggtctgcttacctg 286
||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||
Sbjct: 1 atgcttcaggcgcagaaggtgcgcatcacaagcttcttggacgagcgctctgcttacctg 60
Query: 287 accaagttcaccaaggacgccgacaccgagttcgacatgattgggcagaacgccatgaaa 346
|||||||| | ||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct: 61 accaagtttgcgaaggatgcggacaccgagttcgatctgattggccagaacgccatgaaa 120
Query: 347 gagctcgatcaaattggggaccagataatggagcgtctcgacagcaagatgcagtcctac 406
||||| ||| || |||||||||||||||||||| | || ||||||||||||||| |||
Sbjct: 121 gagcttgatgaagttggggaccagataatggagaggctggacagcaagatgcaggccttt 180
Query: 407 gaggagacagctgaaatgcaaaggcaggagatagaaatgaatgagagagtgttagaagac 466
|||||||| |||||| | ||||||||||||||||||||||| ||||| ||| | ||||||
Sbjct: 181 gaggagactgctgaagttcaaaggcaggagatagaaatgaacgagagggtgcttgaagac 240
Query: 467 ttcgaagactggatcgaagaggagaaaaacgaagg 501
|||||||| ||||| || |||||||||| |||||
Sbjct: 241 ttcgaagattggattgagaaggagaaaaatgaagg 275
>dbj| AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 186 bits (94), Expect = 5e-44
Identities = 163/186 (87%)
Strand = Plus / Minus
Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244
||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 36730209 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 36730150
Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304
|| || ||||||| |||| |||||||||| |||||||||||||||||||| | |||||
Sbjct: 36730149 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 36730090
Query: 305 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 364
|| |||||||||||||| ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 36730089 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 36730030
Query: 365 gaccag 370
||||||
Sbjct: 36730029 gaccag 36730024
Score = 121 bits (61), Expect = 2e-24
Identities = 115/133 (86%)
Strand = Plus / Minus
Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428
||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | ||||
Sbjct: 36729952 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 36729893
Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488
||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || |||
Sbjct: 36729892 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 36729833
Query: 489 agaaaaacgaagg 501
||||||| |||||
Sbjct: 36729832 agaaaaatgaagg 36729820
>dbj| AP003279.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0529E05
Length = 134982
Score = 186 bits (94), Expect = 5e-44
Identities = 163/186 (87%)
Strand = Plus / Minus
Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244
||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 56524 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 56465
Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304
|| || ||||||| |||| |||||||||| |||||||||||||||||||| | |||||
Sbjct: 56464 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 56405
Query: 305 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 364
|| |||||||||||||| ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 56404 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 56345
Query: 365 gaccag 370
||||||
Sbjct: 56344 gaccag 56339
Score = 121 bits (61), Expect = 2e-24
Identities = 115/133 (86%)
Strand = Plus / Minus
Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428
||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | ||||
Sbjct: 56267 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 56208
Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488
||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || |||
Sbjct: 56207 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 56148
Query: 489 agaaaaacgaagg 501
||||||| |||||
Sbjct: 56147 agaaaaatgaagg 56135
>dbj| AK105423.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full
insert sequence
Length = 3098
Score = 137 bits (69), Expect = 4e-29
Identities = 120/137 (87%)
Strand = Plus / Minus
Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244
||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 2645 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2586
Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304
|| || ||||||| |||| |||||||||| |||||||||||||||||||| | |||||
Sbjct: 2585 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2526
Query: 305 gccgacaccgagttcga 321
|| ||||||||||||||
Sbjct: 2525 gcggacaccgagttcga 2509
Score = 121 bits (61), Expect = 2e-24
Identities = 115/133 (86%)
Strand = Plus / Minus
Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428
||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | ||||
Sbjct: 2482 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2423
Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488
||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || |||
Sbjct: 2422 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2363
Query: 489 agaaaaacgaagg 501
||||||| |||||
Sbjct: 2362 agaaaaatgaagg 2350
>dbj| AK101805.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full
insert sequence
Length = 3051
Score = 137 bits (69), Expect = 4e-29
Identities = 120/137 (87%)
Strand = Plus / Minus
Query: 185 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 244
||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 2609 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2550
Query: 245 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 304
|| || ||||||| |||| |||||||||| |||||||||||||||||||| | |||||
Sbjct: 2549 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2490
Query: 305 gccgacaccgagttcga 321
|| ||||||||||||||
Sbjct: 2489 gcggacaccgagttcga 2473
Score = 121 bits (61), Expect = 2e-24
Identities = 115/133 (86%)
Strand = Plus / Minus
Query: 369 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 428
||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | ||||
Sbjct: 2461 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2402
Query: 429 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 488
||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || |||
Sbjct: 2401 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2342
Query: 489 agaaaaacgaagg 501
||||||| |||||
Sbjct: 2341 agaaaaatgaagg 2329
>gb| AC162890.4 | Mus musculus chromosome 3, clone RP23-362E13, complete sequence
Length = 113095
Score = 44.1 bits (22), Expect = 0.44
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 283 cctgaccaagttcaccaaggac 304
||||||||||||||||||||||
Sbjct: 38417 cctgaccaagttcaccaaggac 38396
>gb| AC125349.3 | Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence
Length = 194060
Score = 44.1 bits (22), Expect = 0.44
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 283 cctgaccaagttcaccaaggac 304
||||||||||||||||||||||
Sbjct: 41344 cctgaccaagttcaccaaggac 41365
>dbj| AP007284.1 | Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183,
complete sequence
Length = 70173
Score = 44.1 bits (22), Expect = 0.44
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 200 cagcaggaggtgcttgcaaaaa 221
||||||||||||||||||||||
Sbjct: 15867 cagcaggaggtgcttgcaaaaa 15888
>ref| XM_322205.1 | Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
mRNA
Length = 3714
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 364 ggaccagataatggagcgtctcga 387
|||||||||||||||| |||||||
Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>ref| XM_952151.1 | Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
mRNA
Length = 3714
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 364 ggaccagataatggagcgtctcga 387
|||||||||||||||| |||||||
Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>gb| AC145959.3 | Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
Length = 183075
Score = 40.1 bits (20), Expect = 6.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 tgcagtgcatcaaagcagga 122
||||||||||||||||||||
Sbjct: 171766 tgcagtgcatcaaagcagga 171785
>ref| XM_390936.1 | Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10760.1)
partial mRNA
Length = 2469
Score = 40.1 bits (20), Expect = 6.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 139 caagagcagctccgaagatg 158
||||||||||||||||||||
Sbjct: 1996 caagagcagctccgaagatg 1977
>gb| CP000283.1 | Rhodopseudomonas palustris BisB5, complete genome
Length = 4892717
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 184 cggcggtgaccaacgccagcagga 207
|||||||||||| |||||||||||
Sbjct: 2704598 cggcggtgaccagcgccagcagga 2704621
>gb| AC074335.11 | Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete
sequence
Length = 201643
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 cagtgcatcaaagcaggaggagat 128
||||| ||||||||||||||||||
Sbjct: 117112 cagtgaatcaaagcaggaggagat 117135
>gb| AE005913.1 | Caulobacter crescentus CB15 section 239 of 359 of the complete genome
Length = 13785
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 286 gaccaagttcaccaaggacgccga 309
||||||||||| ||||||||||||
Sbjct: 4339 gaccaagttcagcaaggacgccga 4362
>gb| AC107220.4 | Homo sapiens BAC clone RP11-586L23 from 4, complete sequence
Length = 67392
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 198 gccagcaggaggtgcttgcaaaaa 221
||||||||| ||||||||||||||
Sbjct: 59334 gccagcaggtggtgcttgcaaaaa 59357
>gb| AC104801.4 | Homo sapiens BAC clone RP11-356J12 from 2, complete sequence
Length = 132644
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 480 tcgaagaggagaaaaacgaaggca 503
|||||||||||||||| |||||||
Sbjct: 6519 tcgaagaggagaaaaaagaaggca 6542
>gb| AC133565.5 | Homo sapiens chromosome 16 clone RP11-895K13, complete sequence
Length = 168538
Score = 40.1 bits (20), Expect = 6.8
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 71 ccctcgccgcgcagatcctccccgcgcc 98
||||| ||||||||| ||||||||||||
Sbjct: 138979 ccctccccgcgcagaccctccccgcgcc 139006
>gb| U51003.1 |HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds
Length = 3202
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 480 tcgaagaggagaaaaacgaaggca 503
|||||||||||||||| |||||||
Sbjct: 2515 tcgaagaggagaaaaaagaaggca 2492
>dbj| AB208823.1 | Homo sapiens mRNA for distal-less homeo box 2 variant protein
Length = 3163
Score = 40.1 bits (20), Expect = 6.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 480 tcgaagaggagaaaaacgaaggca 503
|||||||||||||||| |||||||
Sbjct: 1604 tcgaagaggagaaaaaagaaggca 1581
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,684,018
Number of Sequences: 3902068
Number of extensions: 3684018
Number of successful extensions: 76993
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76882
Number of HSP's gapped (non-prelim): 110
length of query: 503
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 481
effective length of database: 17,147,199,772
effective search space: 8247803090332
effective search space used: 8247803090332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)