Clone Name | basdd07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY108278.1| Zea mays PCO119899 mRNA sequence Length = 1540 Score = 167 bits (84), Expect = 4e-38 Identities = 199/236 (84%), Gaps = 1/236 (0%) Strand = Plus / Plus Query: 178 tctctccagaagctcatggtgtgctttgtgcagctgacggccaagttcccgctcgtgata 237 ||||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||| Sbjct: 1084 tctctgcaaaagcttatggtgtgcttcatgcagctgacggccaagttcccactcgtgata 1143 Query: 238 atgtttcttctcatagttctctatgccgtccctgccagcgccgcggttctgctcctgtat 297 || ||||| || ||||| || ||||| |||||||| || || || |||||| | || || Sbjct: 1144 atctttctgctgatagtcctttatgctgtccctgcaagtgctgctgttctggttctctac 1203 Query: 298 gtccttgtcacgtttttgtttgcgctgccgtcgtttctgatcctctactttgcttatccc 357 | ||||||||||||||||||||| ||||| || ||| |||||||||||||||| || ||| Sbjct: 1204 gcccttgtcacgtttttgtttgcactgccctcatttttgatcctctactttgcctacccc 1263 Query: 358 accttggactggctcgtgagagagatattcacttgagccgtgctgttctgaaatgt 413 | |||||| ||||| || |||||||| ||| ||| | ||||||| |||||||||| Sbjct: 1264 agcttggattggcttgtcagagagatcttcgcttaattcgtgctg-tctgaaatgt 1318
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261 ||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 5769042 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 5769101 Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321 || |||||||| |||| || ||||| | ||||||||||||| || |||||||||| Sbjct: 5769102 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 5769161 Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381 |||||||| ||| |||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 5769162 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 5769221 Query: 382 atattcacttgag 394 || |||| ||||| Sbjct: 5769222 atcttcaattgag 5769234
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Minus Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261 ||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 62129 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 62070 Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321 || |||||||| |||| || ||||| | ||||||||||||| || |||||||||| Sbjct: 62069 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 62010 Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381 |||||||| ||| |||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 62009 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 61950 Query: 382 atattcacttgag 394 || |||| ||||| Sbjct: 61949 atcttcaattgag 61937
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261 ||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 5768255 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 5768314 Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321 || |||||||| |||| || ||||| | ||||||||||||| || |||||||||| Sbjct: 5768315 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 5768374 Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381 |||||||| ||| |||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 5768375 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 5768434 Query: 382 atattcacttgag 394 || |||| ||||| Sbjct: 5768435 atcttcaattgag 5768447
>dbj|AK111964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H12, full insert sequence Length = 1184 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261 ||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 799 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 858 Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321 || |||||||| |||| || ||||| | ||||||||||||| || |||||||||| Sbjct: 859 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 918 Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381 |||||||| ||| |||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 919 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 978 Query: 382 atattcacttgag 394 || |||| ||||| Sbjct: 979 atcttcaattgag 991
>dbj|AK111910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090H12, full insert sequence Length = 1198 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261 ||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 813 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 872 Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321 || |||||||| |||| || ||||| | ||||||||||||| || |||||||||| Sbjct: 873 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 932 Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381 |||||||| ||| |||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 933 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 992 Query: 382 atattcacttgag 394 || |||| ||||| Sbjct: 993 atcttcaattgag 1005
>ref|NM_202647.1| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding AT3G29270 transcript variant AT3G29270.2 mRNA, complete cds Length = 2119 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356 ||||||||||| ||||||||||| |||||||| Sbjct: 1736 ccgtcgtttctcatcctctacttcgcttatcc 1767
>ref|NM_113852.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding AT3G29270 transcript variant AT3G29270.1 mRNA, complete cds Length = 1251 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356 ||||||||||| ||||||||||| |||||||| Sbjct: 868 ccgtcgtttctcatcctctacttcgcttatcc 899
>gb|DQ086861.1| Arabidopsis thaliana At3g29270 mRNA, complete cds Length = 792 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356 ||||||||||| ||||||||||| |||||||| Sbjct: 724 ccgtcgtttctcatcctctacttcgcttatcc 755
>emb|BX822667.1|CNS0A60N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZC10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1990 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356 ||||||||||| ||||||||||| |||||||| Sbjct: 1736 ccgtcgtttctcatcctctacttcgcttatcc 1767
>gb|BT004444.1| Arabidopsis thaliana clone U20221 unknown protein (At3g29270) mRNA, complete cds Length = 823 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356 ||||||||||| ||||||||||| |||||||| Sbjct: 724 ccgtcgtttctcatcctctacttcgcttatcc 755
>gb|BT002808.1| Arabidopsis thaliana clone RAFL15-02-A01 (R20221) unknown protein (At3g29270) mRNA, complete cds Length = 1210 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356 ||||||||||| ||||||||||| |||||||| Sbjct: 868 ccgtcgtttctcatcctctacttcgcttatcc 899
>dbj|AP002045.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMF24 Length = 18605 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356 ||||||||||| ||||||||||| |||||||| Sbjct: 4295 ccgtcgtttctcatcctctacttcgcttatcc 4326
>ref|NM_122376.3| Arabidopsis thaliana hydrolase/ zinc ion binding AT5G24670 mRNA, complete cds Length = 1785 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 122 cctcttctgccagagatagaaat 144 ||||||||||||||||||||||| Sbjct: 1204 cctcttctgccagagatagaaat 1226
>gb|BT020197.1| Arabidopsis thaliana At5g24670 mRNA, complete cds Length = 1203 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 122 cctcttctgccagagatagaaat 144 ||||||||||||||||||||||| Sbjct: 794 cctcttctgccagagatagaaat 816
>gb|BT015762.1| Arabidopsis thaliana At5g24670 mRNA, complete cds Length = 1593 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 122 cctcttctgccagagatagaaat 144 ||||||||||||||||||||||| Sbjct: 1135 cctcttctgccagagatagaaat 1157
>emb|BX829682.1|CNS09YQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZB05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1651 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 122 cctcttctgccagagatagaaat 144 ||||||||||||||||||||||| Sbjct: 1168 cctcttctgccagagatagaaat 1190
>dbj|AB016881.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC17 Length = 27263 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 122 cctcttctgccagagatagaaat 144 ||||||||||||||||||||||| Sbjct: 10248 cctcttctgccagagatagaaat 10270
>gb|AC121504.14| Mus musculus chromosome 13, clone RP24-140A15, complete sequence Length = 156791 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 183 ccagaagctcatggtgtgctttg 205 ||||||||||||||||||||||| Sbjct: 26937 ccagaagctcatggtgtgctttg 26959
>gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosome 16, complete sequence Length = 192614 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 gcaacacctccaacactgcca 172 ||||||||||||||||||||| Sbjct: 113643 gcaacacctccaacactgcca 113663
>emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chromosome 16, complete sequence Length = 166299 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 gcaacacctccaacactgcca 172 ||||||||||||||||||||| Sbjct: 35594 gcaacacctccaacactgcca 35614
>emb|Z70210.1|CEK08H2 Caenorhabditis elegans Cosmid K08H2, complete sequence Length = 36539 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctttgtgaaagtgaaacaaa 450 |||||||||||||||||||| Sbjct: 14732 ctttgtgaaagtgaaacaaa 14713
>gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, complete sequence Length = 195122 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 gaaatgtaagtacagtttat 426 |||||||||||||||||||| Sbjct: 153257 gaaatgtaagtacagtttat 153238
>gb|AC161168.6| Mus musculus chromosome 1, clone RP24-364J15, complete sequence Length = 163341 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ccttgtcacgtttttgtttg 319 |||||||||||||||||||| Sbjct: 156239 ccttgtcacgtttttgtttg 156258
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acgggcagagacctcttctg 130 |||||||||||||||||||| Sbjct: 1232496 acgggcagagacctcttctg 1232515
>gb|AC118656.4| Homo sapiens chromosome 11, clone RP11-313H5, complete sequence Length = 155143 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gaaatgtaagtacagtttat 426 |||||||||||||||||||| Sbjct: 16131 gaaatgtaagtacagtttat 16150
>dbj|BS000010.1| Pan troglodytes chromosome 22 clone:PTB-095F11, map 22, complete sequences Length = 177250 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 caaagttccatttctctggt 33 |||||||||||||||||||| Sbjct: 108539 caaagttccatttctctggt 108520
>emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 226035 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ctccagaagctcatggtgtg 200 |||||||||||||||||||| Sbjct: 153868 ctccagaagctcatggtgtg 153849
>gb|AC102788.7| Mus musculus chromosome 1, clone RP23-437G8, complete sequence Length = 212403 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccttgtcacgtttttgtttg 319 |||||||||||||||||||| Sbjct: 99998 ccttgtcacgtttttgtttg 99979
>emb|AL935188.7| Zebrafish DNA sequence from clone CH211-243G6, complete sequence Length = 160946 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 cgtgataatgtttcttctca 250 |||||||||||||||||||| Sbjct: 87527 cgtgataatgtttcttctca 87508
>emb|X05177.1|DFUBX1 Drosophila funebris ubx (Ultrabithorax) gene 5' region Length = 3002 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ccgctggcaacacctccaac 165 |||||||||||||||||||| Sbjct: 2519 ccgctggcaacacctccaac 2538 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,044,341 Number of Sequences: 3902068 Number of extensions: 4044341 Number of successful extensions: 74475 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74358 Number of HSP's gapped (non-prelim): 112 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)