ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdb04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to riboso... 43 6e-04
2TAR1_KLULA (Q6CQE5) Protein TAR1 41 0.002
3FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall a... 30 7.3

>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = -3

Query: 604 ESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 428
           +SP H     R++ T         + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 3   DSPTHKEQ--RAQNTMSDQMPFPFNNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59



to top

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -3

Query: 532 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 428
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 10  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44



to top

>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)|
          Length = 1609

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
 Frame = -3

Query: 337  PSXVRHSTASPSSTTLVLLS-HNPVFTV*AAPISLA--ATTGIAFAFFSSGY*DVSVRQV 167
            PS    S +SPSST+L+  S  +P FT    P + A  ++T IA +   S    +S+  V
Sbjct: 1279 PSSSSISASSPSSTSLLSTSLPSPAFTSSTLPTATAVSSSTFIASSLPLSSKSSLSLSPV 1338

Query: 166  VSCLLMD--SAGSLKG*PIWESPDLCLFSTPRSISSL 62
             S +LM   S+ S     +   P L +  T  ++S L
Sbjct: 1339 SSSILMSQFSSSSSSSSSLASLPSLSISPTVDTVSVL 1375


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,934,652
Number of Sequences: 219361
Number of extensions: 1820497
Number of successful extensions: 3601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3601
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top