ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdd09 |
|---|---|
| Clone Library Name | barley_pub |
>PEX2_ARATH (Q9CA86) Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2)| (Pex2p) Length = 333 Score = 286 bits (731), Expect = 3e-77 Identities = 143/177 (80%), Positives = 156/177 (88%), Gaps = 2/177 (1%) Frame = +3 Query: 3 DVEMSAMLKEQLVKVFSLMKPGLLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRY 182 DVEMSAMLKEQLVKVF+LMKPG+LFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRY Sbjct: 49 DVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRY 108 Query: 183 RDERA--APIAGKEVRTGLEGPGLSVSQKILYCISTVGGQYLLSRLQSFSAFRRWGDSEQ 356 RDER A GK VRTGLEGPGL+ QKI YC+++VGGQYL SRLQSFSAFRRWGDSEQ Sbjct: 109 RDERGVVAQHLGK-VRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQSFSAFRRWGDSEQ 167 Query: 357 RPLARRAWGLVQHAEGLYRAVSFFNLLSFLYGGRYKTLVERILKARLVYGSPNMNRA 527 RPLARR W LVQ EG+Y+A SF NLLSFLY GRY+ L+E+ LKARLVY SP+MNR+ Sbjct: 168 RPLARRLWTLVQRIEGIYKAASFLNLLSFLYTGRYRNLIEKALKARLVYRSPHMNRS 224
>PEX2_RAT (P24392) Peroxisome assembly factor 1 (PAF-1) (Peroxin-2)| (Peroxisomal membrane protein 3) Length = 305 Score = 79.3 bits (194), Expect = 6e-15 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 3/174 (1%) Frame = +3 Query: 12 MSAMLKEQLVKVFSLMKPGLLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYR-D 188 + ++ Q + F KPGLL ++EPE+ AFL +WRF+I+ T G +++N++Y+ D Sbjct: 29 LEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTIYSKNATVGQSVLNIQYKND 88 Query: 189 ERAAPIAGKEVRTGLEGPGLSVSQKILYCISTVGGQYLLSRLQSFSAFRRWGDSEQRPLA 368 P+ + P S +QK+LY + T+GG++L R + FR R LA Sbjct: 89 SSPNPV--------YQPP--SKNQKLLYAVCTIGGRWLEER--CYDLFR------NRHLA 130 Query: 369 R--RAWGLVQHAEGLYRAVSFFNLLSFLYGGRYKTLVERILKARLVYGSPNMNR 524 +A + GL + N L FL G++ TL ER+L V+ P R Sbjct: 131 SFGKAKQCMNFVVGLLKLGELMNFLIFLQKGKFATLTERLLGIHSVFCKPQSMR 184
>PEX2_YARLI (Q99155) Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal| protein PAY5) Length = 381 Score = 79.3 bits (194), Expect = 6e-15 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Frame = +3 Query: 3 DVEMSAMLKEQLVKVFSLMKPGLLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRY 182 D E+ +LK QL K F+ P +YE EL L+ ++++ ++W T G L NL++ Sbjct: 28 DAELVDLLKNQLFKGFTNFHPEFRDKYESELVLALKLILFKLTVWDHAITYGGKLQNLKF 87 Query: 183 RDERAAPIAGKEVRTGLEGPGLSVSQKILYCISTVGGQYLLSRLQSFSAFRRWGD----- 347 D R + + +++ SV QK+ Y I VGG YL S+++ + R D Sbjct: 88 IDSRHS--SKLQIQP-------SVIQKLGYGILVVGGGYLWSKIEGYLLARSEDDVATDG 138 Query: 348 --SEQRPLARRAWGLVQHAEGLYRAVSFFNLLSFLYGGRYKTLVERILKARLV 500 AR A + A LY A + N ++FLY GRY T++ R+L+ RLV Sbjct: 139 TSVRGASAARGALKVANFASLLYSAATLGNFVAFLYTGRYATVIMRLLRIRLV 191
>PEX2_MOUSE (P55098) Peroxisome assembly factor 1 (PAF-1) (Peroxin-2)| (Peroxisomal membrane protein 3) Length = 305 Score = 77.0 bits (188), Expect = 3e-14 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 3/174 (1%) Frame = +3 Query: 12 MSAMLKEQLVKVFSLMKPGLLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYR-D 188 + ++ Q + F KPGLL ++EPE+ AFL +WRF+I+ T G +++N++++ D Sbjct: 29 LEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTIYSKNATVGQSVLNIQHKND 88 Query: 189 ERAAPIAGKEVRTGLEGPGLSVSQKILYCISTVGGQYLLSRLQSFSAFRRWGDSEQRPLA 368 P+ + P S +QK+LY + T+GG++L R + FR R LA Sbjct: 89 SSPNPV--------YQPP--SKNQKLLYAVCTIGGRWLEER--CYDLFR------NRHLA 130 Query: 369 R--RAWGLVQHAEGLYRAVSFFNLLSFLYGGRYKTLVERILKARLVYGSPNMNR 524 +A + GL + N L FL G++ TL ER+L V+ P R Sbjct: 131 SFGKAKQCMNFVVGLLKLGELMNFLIFLQKGKFATLTERLLGIHSVFCKPQNMR 184
>PEX2_PODAN (P51021) Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal| protein CAR1) Length = 554 Score = 75.9 bits (185), Expect = 6e-14 Identities = 48/149 (32%), Positives = 77/149 (51%) Frame = +3 Query: 78 QYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAAPIAGKEVRTGLEGPGLSVS 257 +++ E+ L +I++ +IW T G AL NL+Y D R TG S Sbjct: 157 EWDAEISLALRAVIFKLTIWDHDATYGAALQNLKYTDAR---------HTGSVLVPPSKW 207 Query: 258 QKILYCISTVGGQYLLSRLQSFSAFRRWGDSEQRPLARRAWGLVQHAEGLYRAVSFFNLL 437 QK LY + TVGG+Y+ S+ +++ + G E P +R + L+ A SF + L Sbjct: 208 QKGLYGLMTVGGRYMWSKWENWLREQDGGYDEPSPTVQRLSSMTDRLSTLHAAASFASFL 267 Query: 438 SFLYGGRYKTLVERILKARLVYGSPNMNR 524 FL GRY+TL++R+L+ RL + ++R Sbjct: 268 VFLLQGRYRTLLDRVLRMRLAPPTSQVSR 296
>PEX2_CRIGR (Q06438) Peroxisome assembly factor 1 (PAF-1) (Peroxin-2)| (Peroxisomal membrane protein 3) Length = 304 Score = 72.8 bits (177), Expect = 5e-13 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 12 MSAMLKEQLVKVFSLMKPGLLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE 191 + ++ Q + F KPGLL ++EPE+ A L +WRF+I+ T G +++N++Y+++ Sbjct: 28 LEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWLFLWRFTIYSKNATVGQSVLNIQYKND 87 Query: 192 RAAPIAGKEVRTGLEGPGLSVSQKILYCISTVGGQYLLSRLQSFSAFRRWGDSEQRPLAR 371 ++ + + P S +QK+ Y + T+GG++L R + FR R LA Sbjct: 88 FSS-------NSRYQPP--SKNQKLWYAVCTIGGRWLEER--CYDLFR------NRHLA- 129 Query: 372 RAWGLVQHA----EGLYRAVSFFNLLSFLYGGRYKTLVERILKARLVYGSP 512 ++G V+ GL + N L FL G++ TL ER+L V+ P Sbjct: 130 -SFGKVKQCMNVMVGLLKLGELINFLIFLQKGKFATLTERLLGIHSVFCKP 179
>PEX2_HUMAN (P28328) Peroxisome assembly factor 1 (PAF-1) (Peroxin-2)| (Peroxisomal membrane protein 3) (35 kDa peroxisomal membrane protein) (RING finger protein 72) Length = 305 Score = 72.4 bits (176), Expect = 7e-13 Identities = 48/167 (28%), Positives = 79/167 (47%) Frame = +3 Query: 12 MSAMLKEQLVKVFSLMKPGLLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE 191 + ++ Q + F KPGLL ++EPE+ A L +WRF+I+ T G +++N++Y++ Sbjct: 29 LEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTIYSKNATVGQSVLNIKYKN- 87 Query: 192 RAAPIAGKEVRTGLEGPGLSVSQKILYCISTVGGQYLLSRLQSFSAFRRWGDSEQRPLAR 371 + L S +QKI Y + T+GG++L R + FR + Sbjct: 88 --------DFSPNLRYQPPSKNQKIWYAVCTIGGRWLEER--CYDLFR----NHHLASFG 133 Query: 372 RAWGLVQHAEGLYRAVSFFNLLSFLYGGRYKTLVERILKARLVYGSP 512 + V GL + N L FL G++ TL ER+L V+ P Sbjct: 134 KVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP 180
>Y132_THEVO (Q97CG9) UPF0219 protein TV0132| Length = 351 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 426 RMKQLCTVLRHAAPSPKHDVLVVSVQNHPSDGKQKKI---AIGTISIGHQQC*YSTR 265 R+K +L + P+P DV +SV+ + K+KKI IG I +G + Y+ + Sbjct: 31 RIKNGIFILSKSVPAPDEDVATISVEAARNALKRKKINPKEIGAIYVGSESHPYAVK 87
>FYV1_DROME (O96838) Putative FYVE finger-containing phosphoinositide kinase (EC| 2.7.1.68) (1-phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5-kinase) Length = 1809 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/74 (29%), Positives = 29/74 (39%) Frame = +1 Query: 250 QFLKRSCTVLALLVANTYCPDCNLFLLSVAGVILNRDH*HVVLGAWCSMPKDCTELFHSL 429 QFL+R C + N+ CP CNL +L HV HSL Sbjct: 995 QFLQRYCCLF-----NSMCPSCNLPMLG-----------HV------------RRYVHSL 1026 Query: 430 ICCHFFMVEDIKLS 471 C H ++ ED+ S Sbjct: 1027 GCVHVYLTEDLTRS 1040
>YHM1_YEAST (P38988) Putative mitochondrial carrier protein YHM1/SHM1| Length = 300 Score = 29.3 bits (64), Expect = 7.0 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 144 KPTPGNALMNLRYRDERAAPIAGKEVRTGLEGPGLSVSQKILYCISTVGGQ 296 K T G L + +RD + P+ GK + T G G + S K+L + GGQ Sbjct: 44 KITSGQELNRVIFRDHFSEPL-GKRLFTLFPGLGYAASYKVLQRVYKYGGQ 93
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 28.9 bits (63), Expect = 9.1 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 352 SESPQRRKAEKDCNRDNKYW 293 +ES RR+ KDC+R+ YW Sbjct: 811 AESVTRRRQRKDCDREKPYW 830
>ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50| Length = 1375 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -3 Query: 437 QQIKE*NSSVQSFGMLHQAPSTTC*WSLFRITPATESRKRLQSGQ*VLATNSANT 273 Q I +S+ QS G H +PS+ WS ++ P+ +S K + G+ + NSA + Sbjct: 1176 QSIVSPSSTTQSLGQSHNSPSSEFEWS--QVKPSLKSTKASKGGK---SENSAKS 1225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,728,932 Number of Sequences: 219361 Number of extensions: 1684072 Number of successful extensions: 4440 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4330 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4430 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
