ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdd07 |
|---|---|
| Clone Library Name | barley_pub |
>EPAS1_MOUSE (P97481) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like factor) (MHLF) (HIF-related factor) (HRF) Length = 874 Score = 32.7 bits (73), Expect = 0.50 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = +3 Query: 216 GQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPLLCLSHLGLARERDIHLS 395 GQV +N HSSLC P+ C + +C +P+ SH+ + + LS Sbjct: 197 GQVRVYNNCPPHSSLCG-----SKEPLLSCLIIMC-----EPIQHPSHMDIPLDSKTFLS 246 Query: 396 RAVLKCKYSLC 428 R + K++ C Sbjct: 247 RHSMDMKFTYC 257
>KIF12_MOUSE (Q9D2Z8) Kinesin-like protein KIF12| Length = 642 Score = 32.3 bits (72), Expect = 0.65 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 267 PCQRRGSAPVCPCHVFVCAAVVSDPLLCLSH 359 P ++GS PVCPC + A+ + P LC H Sbjct: 469 PLPQQGSTPVCPCRMVPAASCHALPPLCYCH 499
>EPAS1_RAT (Q9JHS1) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) Length = 874 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/71 (28%), Positives = 33/71 (46%) Frame = +3 Query: 216 GQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPLLCLSHLGLARERDIHLS 395 GQV +N HSSLC + P+ C + +C +P+ SH+ + + LS Sbjct: 197 GQVRVYNNCPPHSSLCGYKE-----PLLSCLIIMC-----EPIQHPSHMDIPLDSKTFLS 246 Query: 396 RAVLKCKYSLC 428 R + K++ C Sbjct: 247 RHSMDMKFTYC 257
>VMSA_HPBGS (P03144) Major surface antigen precursor| Length = 428 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 18 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRDL 125 V FLW++ I+ SL WW S P P TG++L Sbjct: 222 VYFLWTKILTIAQSLDWWWTSLSFPGGIPECTGQNL 257
>CENPE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)| Length = 2663 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 330 VSDPLLCLSHLGLARERDIHLSRAVLKCKYSLCSFVKVKQSLDICSKK 473 + D CL+ L L E++I R + K KY L K+K+ C K Sbjct: 2108 MDDHYECLNRLSLDLEKEIEFHRIMKKLKYVLSYVTKIKEEQHECINK 2155
>EPAS1_HUMAN (Q99814) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Member of PAS protein 2) (MOP2) (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like factor) (HLF) Length = 870 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = +3 Query: 216 GQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPLLCLSHLGLARERDIHLS 395 GQV +N H+SLC + P+ C + +C +P+ SH+ + + LS Sbjct: 197 GQVKVYNNCPPHNSLCGYKE-----PLLSCLIIMC-----EPIQHPSHMDIPLDSKTFLS 246 Query: 396 RAVLKCKYSLC 428 R + K++ C Sbjct: 247 RHSMDMKFTYC 257
>INSRR_HUMAN (P14616) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) [Contains: Insulin receptor-related protein alpha chain; Insulin receptor-related protein beta chain] Length = 1297 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 165 HCQRVSPEAHGVLCAADGQ 221 HCQRV P HG+ C A G+ Sbjct: 209 HCQRVCPCPHGMACTARGE 227
>ESAG8_TRYBB (P23799) Putative adenylate cyclase regulatory protein (Leucine| repeat protein) (VSG expression site-associated protein F14.9) Length = 630 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Frame = +3 Query: 255 SLCRPCQRRGSAPVCPCHVFVCAAVVSDPLLCLS---HLGLARERDIHLSRAVLKCKYSL 425 ++CR G+ + PC C A V C S +G R+ + HL R + L Sbjct: 11 AVCREPWAEGAVELLPCRHVFCTACVVQRWRCPSCQRRIGGRRKANPHLLREIADVTMEL 70 Query: 426 CSFVKVKQSLDI 461 + K + +D+ Sbjct: 71 KRYRKGRSGIDV 82
>DNAJ_SALTY (P0A1G7) Chaperone protein dnaJ| Length = 378 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +3 Query: 204 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 308 C GQV R + C CQ RG+ PCH Sbjct: 166 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 200
>DNAJ_SALTI (P0A1G8) Chaperone protein dnaJ| Length = 378 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +3 Query: 204 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 308 C GQV R + C CQ RG+ PCH Sbjct: 166 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 200
>DNAJ_SALPA (Q5PDJ4) Chaperone protein dnaJ| Length = 374 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +3 Query: 204 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 308 C GQV R + C CQ RG+ PCH Sbjct: 162 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 196
>DNAJ_SALCH (Q57TP2) Chaperone protein dnaJ| Length = 378 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +3 Query: 204 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 308 C GQV R + C CQ RG+ PCH Sbjct: 166 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 200
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 28.9 bits (63), Expect = 7.2 Identities = 20/66 (30%), Positives = 27/66 (40%) Frame = +3 Query: 165 HCQRVSPEAHGVLCAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPL 344 HC+ E H C G RDN S LC C + + P C ++ CA+ D Sbjct: 599 HCETNINECHSQPCRHGGTCQDRDN----SYLCL-CLKGTTGPNCEINLDDCASNPCDSG 653 Query: 345 LCLSHL 362 CL + Sbjct: 654 TCLDKI 659
>VMSA_WHVW6 (P11293) Major surface antigen precursor| Length = 282 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 18 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 122 V FLW++ I+ +L WW S P P TG++ Sbjct: 76 VYFLWTKIPTIAQNLDWWWTSLSFPGGIPECTGQN 110
>KR124_HUMAN (P60329) Keratin-associated protein 12-4 (Keratin-associated| protein 12.4) (High sulfur keratin-associated protein 12.4) Length = 112 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Frame = +3 Query: 183 PEAHGVLCAADGQVPARDNVSSHSSLCRP-------CQRRGSAPVCPCHVFVCAAVVSDP 341 PE +G C A LCRP CQ P PC V C V P Sbjct: 28 PEGYGTSCCCSAPCVAL--------LCRPLCGVSTCCQPACCVP-SPCQVACCVPVSCKP 78 Query: 342 LLCLS 356 +LC++ Sbjct: 79 VLCVA 83
>HUNB_MUSDO (Q01778) Protein hunchback| Length = 817 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = +1 Query: 88 HHRRAPTARAETSSARDRNAAGNTSNTASVS 180 HH PT A TS++ +++GN+SN++S S Sbjct: 716 HHHHNPTT-ANTSASSTASSSGNSSNSSSTS 745
>VMSA_WHV1 (P03143) Major surface antigen precursor| Length = 426 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 18 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 122 V FLW++ I+ +L WW S P P TG++ Sbjct: 220 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 254
>VMSA_WHV8 (P17400) Major surface antigen precursor| Length = 431 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 18 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 122 V FLW++ I+ +L WW S P P TG++ Sbjct: 225 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 259
>VMSA_WHV7 (P12909) Major surface antigen precursor| Length = 431 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 18 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 122 V FLW++ I+ +L WW S P P TG++ Sbjct: 225 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 259
>VMSA_WHV59 (P12910) Major surface antigen precursor| Length = 431 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 18 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 122 V FLW++ I+ +L WW S P P TG++ Sbjct: 225 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,886,849 Number of Sequences: 219361 Number of extensions: 1188389 Number of successful extensions: 3612 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3609 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
