ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdc03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL590293.3| Human DNA sequence from clone RP11-227B10 on chr... 46 0.065
2gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosom... 40 4.0
3ref|XM_475121.1| Oryza sativa (japonica cultivar-group), predic... 40 4.0
4ref|XM_472990.1| Oryza sativa (japonica cultivar-group), predic... 40 4.0
5emb|CR733881.2|CNS0GT1K Tetraodon nigroviridis full-length cDNA 40 4.0
6emb|CR720476.2|CNS0GIV6 Tetraodon nigroviridis full-length cDNA 40 4.0
7emb|CR717798.2|CNS0GGSS Tetraodon nigroviridis full-length cDNA 40 4.0
8emb|CR716786.2|CNS0GG0R Tetraodon nigroviridis full-length cDNA 40 4.0
9emb|CR706085.2|CNS0G7RL Tetraodon nigroviridis full-length cDNA 40 4.0
10emb|CR706333.2|CNS0G7YH Tetraodon nigroviridis full-length cDNA 40 4.0
11emb|CR702087.2|CNS0G4OJ Tetraodon nigroviridis full-length cDNA 40 4.0
12emb|CR698551.2|CNS0G1YB Tetraodon nigroviridis full-length cDNA 40 4.0
13emb|CR688935.2|CNS0FUJ7 Tetraodon nigroviridis full-length cDNA 40 4.0
14emb|CR686526.2|CNS0FSOA Tetraodon nigroviridis full-length cDNA 40 4.0
15emb|CR673871.2|CNS0FIXH Tetraodon nigroviridis full-length cDNA 40 4.0
16emb|CR632767.2|CNS0EN7P Tetraodon nigroviridis full-length cDNA 40 4.0
17emb|CR634094.2|CNS0EO8K Tetraodon nigroviridis full-length cDNA 40 4.0
18emb|CR633412.2|CNS0ENPM Tetraodon nigroviridis full-length cDNA 40 4.0
19emb|CR632968.2|CNS0ENDA Tetraodon nigroviridis full-length cDNA 40 4.0
20gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete ... 40 4.0
21emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 40 4.0
22gb|AC137553.45| Medicago truncatula clone mth2-20p12, complete s... 40 4.0
23dbj|AK145252.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cD... 40 4.0
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
25dbj|AK069045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
26emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4,... 40 4.0
27emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chr... 40 4.0

>emb|AL590293.3| Human DNA sequence from clone RP11-227B10 on chromosome Xq21.33-22.3,
            complete sequence
          Length = 67911

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 93   aaatgatgtggagatgaaagttg 115
            |||||||||||||||||||||||
Sbjct: 9473 aaatgatgtggagatgaaagttg 9451



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>gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosome 14, complete sequence
          Length = 143851

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    cccgcagaacacaaggaaga 197
              ||||||||||||||||||||
Sbjct: 138798 cccgcagaacacaaggaaga 138817



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>ref|XM_475121.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1884

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 acaaggaagatgtcaaacta 207
           ||||||||||||||||||||
Sbjct: 269 acaaggaagatgtcaaacta 288



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>ref|XM_472990.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2757

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   gattgaagctgcaaagagca 64
            ||||||||||||||||||||
Sbjct: 1644 gattgaagctgcaaagagca 1663



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>emb|CR733881.2|CNS0GT1K Tetraodon nigroviridis full-length cDNA
          Length = 568

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 431 gttgatgaagatgtgaaagctgct 408



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>emb|CR720476.2|CNS0GIV6 Tetraodon nigroviridis full-length cDNA
          Length = 577

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 457 gttgatgaagatgtgaaagctgct 434



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>emb|CR717798.2|CNS0GGSS Tetraodon nigroviridis full-length cDNA
          Length = 553

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 416 gttgatgaagatgtgaaagctgct 393



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>emb|CR716786.2|CNS0GG0R Tetraodon nigroviridis full-length cDNA
          Length = 526

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366



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>emb|CR706085.2|CNS0G7RL Tetraodon nigroviridis full-length cDNA
          Length = 668

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 424 gttgatgaagatgtgaaagctgct 401



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>emb|CR706333.2|CNS0G7YH Tetraodon nigroviridis full-length cDNA
          Length = 677

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 424 gttgatgaagacgtgaaagctgct 401



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>emb|CR702087.2|CNS0G4OJ Tetraodon nigroviridis full-length cDNA
          Length = 559

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 422 gttgatgaagatgtgaaagctgct 399



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>emb|CR698551.2|CNS0G1YB Tetraodon nigroviridis full-length cDNA
          Length = 558

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 425 gttgatgaagatgtgaaagctgct 402



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>emb|CR688935.2|CNS0FUJ7 Tetraodon nigroviridis full-length cDNA
          Length = 580

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 443 gttgatgaagatgtgaaagctgct 420



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>emb|CR686526.2|CNS0FSOA Tetraodon nigroviridis full-length cDNA
          Length = 525

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 392 gttgatgaagatgtgaaagctgct 369



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>emb|CR673871.2|CNS0FIXH Tetraodon nigroviridis full-length cDNA
          Length = 595

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 462 gttgatgaagatgtgaaagctgct 439



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>emb|CR632767.2|CNS0EN7P Tetraodon nigroviridis full-length cDNA
          Length = 522

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366



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>emb|CR634094.2|CNS0EO8K Tetraodon nigroviridis full-length cDNA
          Length = 564

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 429 gttgatgaagatgtgaaagctgct 406



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>emb|CR633412.2|CNS0ENPM Tetraodon nigroviridis full-length cDNA
          Length = 522

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366



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>emb|CR632968.2|CNS0ENDA Tetraodon nigroviridis full-length cDNA
          Length = 522

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 gttgatgaagaggtgaaagctgct 135
           ||||||||||| ||||||||||||
Sbjct: 389 gttgatgaagacgtgaaagctgct 366



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>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence
          Length = 129921

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    acaaatgatgtggagatgaa 110
             ||||||||||||||||||||
Sbjct: 64052 acaaatgatgtggagatgaa 64071



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>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
             complete sequence
          Length = 146313

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    gattgaagctgcaaagagca 64
             ||||||||||||||||||||
Sbjct: 78836 gattgaagctgcaaagagca 78855



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>gb|AC137553.45| Medicago truncatula clone mth2-20p12, complete sequence
          Length = 134249

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    acaaatgatgtggagatgaa 110
             ||||||||||||||||||||
Sbjct: 30088 acaaatgatgtggagatgaa 30107



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>dbj|AK145252.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length
            enriched library, clone:G930027N08 product:NUANCE
            (Fragment) homolog [Mus musculus], full insert sequence
          Length = 3077

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   gctgcaaagagcactgatgt 71
            ||||||||||||||||||||
Sbjct: 1957 gctgcaaagagcactgatgt 1976



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 45       gattgaagctgcaaagagca 64
                ||||||||||||||||||||
Sbjct: 24519205 gattgaagctgcaaagagca 24519224



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>dbj|AK069045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010C01, full
            insert sequence
          Length = 3326

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   gattgaagctgcaaagagca 64
            ||||||||||||||||||||
Sbjct: 1931 gattgaagctgcaaagagca 1950



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>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20,
              complete sequence
          Length = 116983

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     gattgaagctgcaaagagca 64
              ||||||||||||||||||||
Sbjct: 112527 gattgaagctgcaaagagca 112546



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>emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chromosome 14, complete
              sequence
          Length = 181740

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    cccgcagaacacaaggaaga 197
              ||||||||||||||||||||
Sbjct: 152618 cccgcagaacacaaggaaga 152599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,649,766
Number of Sequences: 3902068
Number of extensions: 2649766
Number of successful extensions: 51771
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51725
Number of HSP's gapped (non-prelim): 46
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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