Clone Name | basdc03 |
---|---|
Clone Library Name | barley_pub |
>emb|AL590293.3| Human DNA sequence from clone RP11-227B10 on chromosome Xq21.33-22.3, complete sequence Length = 67911 Score = 46.1 bits (23), Expect = 0.065 Identities = 23/23 (100%) Strand = Plus / Minus Query: 93 aaatgatgtggagatgaaagttg 115 ||||||||||||||||||||||| Sbjct: 9473 aaatgatgtggagatgaaagttg 9451
>gb|AC164294.2| Mus musculus BAC clone RP24-556J13 from chromosome 14, complete sequence Length = 143851 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cccgcagaacacaaggaaga 197 |||||||||||||||||||| Sbjct: 138798 cccgcagaacacaaggaaga 138817
>ref|XM_475121.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1884 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acaaggaagatgtcaaacta 207 |||||||||||||||||||| Sbjct: 269 acaaggaagatgtcaaacta 288
>ref|XM_472990.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2757 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gattgaagctgcaaagagca 64 |||||||||||||||||||| Sbjct: 1644 gattgaagctgcaaagagca 1663
>emb|CR733881.2|CNS0GT1K Tetraodon nigroviridis full-length cDNA Length = 568 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 431 gttgatgaagatgtgaaagctgct 408
>emb|CR720476.2|CNS0GIV6 Tetraodon nigroviridis full-length cDNA Length = 577 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 457 gttgatgaagatgtgaaagctgct 434
>emb|CR717798.2|CNS0GGSS Tetraodon nigroviridis full-length cDNA Length = 553 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 416 gttgatgaagatgtgaaagctgct 393
>emb|CR716786.2|CNS0GG0R Tetraodon nigroviridis full-length cDNA Length = 526 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 389 gttgatgaagacgtgaaagctgct 366
>emb|CR706085.2|CNS0G7RL Tetraodon nigroviridis full-length cDNA Length = 668 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 424 gttgatgaagatgtgaaagctgct 401
>emb|CR706333.2|CNS0G7YH Tetraodon nigroviridis full-length cDNA Length = 677 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 424 gttgatgaagacgtgaaagctgct 401
>emb|CR702087.2|CNS0G4OJ Tetraodon nigroviridis full-length cDNA Length = 559 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 422 gttgatgaagatgtgaaagctgct 399
>emb|CR698551.2|CNS0G1YB Tetraodon nigroviridis full-length cDNA Length = 558 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 425 gttgatgaagatgtgaaagctgct 402
>emb|CR688935.2|CNS0FUJ7 Tetraodon nigroviridis full-length cDNA Length = 580 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 443 gttgatgaagatgtgaaagctgct 420
>emb|CR686526.2|CNS0FSOA Tetraodon nigroviridis full-length cDNA Length = 525 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 392 gttgatgaagatgtgaaagctgct 369
>emb|CR673871.2|CNS0FIXH Tetraodon nigroviridis full-length cDNA Length = 595 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 462 gttgatgaagatgtgaaagctgct 439
>emb|CR632767.2|CNS0EN7P Tetraodon nigroviridis full-length cDNA Length = 522 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 389 gttgatgaagacgtgaaagctgct 366
>emb|CR634094.2|CNS0EO8K Tetraodon nigroviridis full-length cDNA Length = 564 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 429 gttgatgaagatgtgaaagctgct 406
>emb|CR633412.2|CNS0ENPM Tetraodon nigroviridis full-length cDNA Length = 522 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 389 gttgatgaagacgtgaaagctgct 366
>emb|CR632968.2|CNS0ENDA Tetraodon nigroviridis full-length cDNA Length = 522 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gttgatgaagaggtgaaagctgct 135 ||||||||||| |||||||||||| Sbjct: 389 gttgatgaagacgtgaaagctgct 366
>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence Length = 129921 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 acaaatgatgtggagatgaa 110 |||||||||||||||||||| Sbjct: 64052 acaaatgatgtggagatgaa 64071
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gattgaagctgcaaagagca 64 |||||||||||||||||||| Sbjct: 78836 gattgaagctgcaaagagca 78855
>gb|AC137553.45| Medicago truncatula clone mth2-20p12, complete sequence Length = 134249 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 acaaatgatgtggagatgaa 110 |||||||||||||||||||| Sbjct: 30088 acaaatgatgtggagatgaa 30107
>dbj|AK145252.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930027N08 product:NUANCE (Fragment) homolog [Mus musculus], full insert sequence Length = 3077 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gctgcaaagagcactgatgt 71 |||||||||||||||||||| Sbjct: 1957 gctgcaaagagcactgatgt 1976
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gattgaagctgcaaagagca 64 |||||||||||||||||||| Sbjct: 24519205 gattgaagctgcaaagagca 24519224
>dbj|AK069045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010C01, full insert sequence Length = 3326 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gattgaagctgcaaagagca 64 |||||||||||||||||||| Sbjct: 1931 gattgaagctgcaaagagca 1950
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gattgaagctgcaaagagca 64 |||||||||||||||||||| Sbjct: 112527 gattgaagctgcaaagagca 112546
>emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chromosome 14, complete sequence Length = 181740 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cccgcagaacacaaggaaga 197 |||||||||||||||||||| Sbjct: 152618 cccgcagaacacaaggaaga 152599 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,649,766 Number of Sequences: 3902068 Number of extensions: 2649766 Number of successful extensions: 51771 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51725 Number of HSP's gapped (non-prelim): 46 length of query: 305 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 283 effective length of database: 17,147,199,772 effective search space: 4852657535476 effective search space used: 4852657535476 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)