ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdc22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA 833 0.0
2emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene 537 e-149
3dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
4dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
5dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
6gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complet... 228 1e-56
7gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA,... 220 3e-54
8gb|BT016635.1| Zea mays clone Contig468 mRNA sequence 186 4e-44
9gb|AY104072.1| Zea mays PCO110104 mRNA sequence 149 1e-32
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
11dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
12ref|XM_477421.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
14dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
15dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
16gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence 50 0.007
17gb|AY105424.1| Zea mays PCO129918 mRNA sequence 50 0.007
18emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chro... 48 0.026
19gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 46 0.10
20ref|XM_477418.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.41
21gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 44 0.41
22gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 44 0.41
23dbj|AK100692.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
24gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.41
25ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 ... 42 1.6
26gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete... 42 1.6
27emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B... 42 1.6
28gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 1.6
29gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromo... 42 1.6
30emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Co... 42 1.6
31emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Co... 42 1.6
32gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 1.6
33gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 6.3
34gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete se... 40 6.3
35ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.3
36gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, co... 40 6.3
37emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.3
38emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.3
39gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complet... 40 6.3
40gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhe... 40 6.3 
>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA
          Length = 502

 Score =  833 bits (420), Expect = 0.0
 Identities = 423/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 37  gccgccggcgcagcgtcatccccgcgcgcgactccgatggccagcaagtgggtccgtccc 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21  gccgccggcgcagcgtcatccccgcgcgcgactccgatggccagcaagtgggtccgtccc 80

                                                                       
Query: 97  gaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgccttcagcctc 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgccttcagcctc 140

                                                                       
Query: 157 ctccgcaacatcaccggcaacccagaagtcagggtcagcaagatggggagggcagcagga 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ctccgcaacatcaccggcaacccagaagtcagggtcagcaagatggggagggcagcagga 200

                                                                       
Query: 217 gtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgtg 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgtg 260

                                                                       
Query: 277 caggacaagacccccgagatcatgccaggaatcaacaagttcttcaccagcccgaaatga 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggacaagacccccgagatcatgccaggaatcaacaagttcttcaccagcccgaaatga 320

                                                                       
Query: 337 agcactttagactgtctgtctgtgactcgctattagaaactgttgtggtcaagtgcaaac 396
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 agcactttagactgtctgtctgtgactcgctattagcaactgttgtggtcaagtgcaaac 380

                                                                       
Query: 397 ctatttcaagcattcagtaatgttgttgcgtccataattcagaggatatcatccagtacc 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatttcaagcattcagtaatgttgttgcgtccataattcagaggatatcatccagtacc 440

               
Query: 457 tctt 460
           ||||
Sbjct: 441 tctt 444
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>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene
          Length = 1931

 Score =  537 bits (271), Expect = e-149
 Identities = 274/275 (99%)
 Strand = Plus / Plus

                                                                        
Query: 186  cagggtcagcaagatggggagggcagcaggagtgcttgagaaccatgaggagggcaggcg 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 cagggtcagcaagatggggagggcagcaggagtgcttgagaaccatgaggagggcaggcg 1371

                                                                        
Query: 246  ctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccagg 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 ctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccagg 1431

                                                                        
Query: 306  aatcaacaagttcttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcg 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 aatcaacaagttcttcaccagcccgaaatgaagcactttagactgtctgtctgtgactcg 1491

                                                                        
Query: 366  ctattagaaactgttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgc 425
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 ctattagcaactgttgtggtcaagtgcaaacctatttcaagcattcagtaatgttgttgc 1551

                                               
Query: 426  gtccataattcagaggatatcatccagtacctctt 460
            |||||||||||||||||||||||||||||||||||
Sbjct: 1552 gtccataattcagaggatatcatccagtacctctt 1586



 Score =  182 bits (92), Expect = 7e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                       
Query: 98  aggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgccttcagcctcc 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgccttcagcctcc 621

                                           
Query: 158 tccgcaacatcaccggcaacccagaagtcagg 189
           ||||||||||||||||||||||||||||||||
Sbjct: 622 tccgcaacatcaccggcaacccagaagtcagg 653



 Score =  131 bits (66), Expect = 2e-27
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                       
Query: 37  gccgccggcgcagcgtcatccccgcgcgcgactccgatggccagcaagtgggtccgtccc 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gccgccggcgcagcgtcatccccgcgcgcgactccgatggccagcaagtgggtccgtccc 479

                 
Query: 97  gaggtg 102
           ||||||
Sbjct: 480 gaggtg 485
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>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full
           insert sequence
          Length = 576

 Score =  228 bits (115), Expect = 1e-56
 Identities = 208/239 (87%)
 Strand = Plus / Plus

                                                                       
Query: 85  tgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgc 144
           |||||||| || |||||||||||||| |||||||||| |||||| ||| |||||||||||
Sbjct: 90  tgggtccgaccggaggtgtacccgctgttcgcggcgatgggcgtggccgtcggcatctgc 149

                                                                       
Query: 145 gccttcagcctcctccgcaacatcaccggcaacccagaagtcagggtcagcaagatgggg 204
           | ||||   ||| |||||||||||||||||||||| ||||||||||| | |||| | |||
Sbjct: 150 ggcttccagctcttccgcaacatcaccggcaaccccgaagtcagggttaacaaggtaggg 209

                                                                       
Query: 205 agggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctc 264
           |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || 
Sbjct: 210 agggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggcta 269

                                                                      
Query: 265 agagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 323
           |||  ||| ||||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 270 agaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 328
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>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full
           insert sequence
          Length = 552

 Score =  228 bits (115), Expect = 1e-56
 Identities = 208/239 (87%)
 Strand = Plus / Plus

                                                                       
Query: 85  tgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgc 144
           |||||||| || |||||||||||||| |||||||||| |||||| ||| |||||||||||
Sbjct: 87  tgggtccgaccggaggtgtacccgctgttcgcggcgatgggcgtggccgtcggcatctgc 146

                                                                       
Query: 145 gccttcagcctcctccgcaacatcaccggcaacccagaagtcagggtcagcaagatgggg 204
           | ||||   ||| |||||||||||||||||||||| ||||||||||| | |||| | |||
Sbjct: 147 ggcttccagctcttccgcaacatcaccggcaaccccgaagtcagggttaacaaggtaggg 206

                                                                       
Query: 205 agggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctc 264
           |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || 
Sbjct: 207 agggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggcta 266

                                                                      
Query: 265 agagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 323
           |||  ||| ||||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 267 agaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 325
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>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full
           insert sequence
          Length = 518

 Score =  228 bits (115), Expect = 1e-56
 Identities = 208/239 (87%)
 Strand = Plus / Plus

                                                                       
Query: 85  tgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgc 144
           |||||||| || |||||||||||||| |||||||||| |||||| ||| |||||||||||
Sbjct: 84  tgggtccgaccggaggtgtacccgctgttcgcggcgatgggcgtggccgtcggcatctgc 143

                                                                       
Query: 145 gccttcagcctcctccgcaacatcaccggcaacccagaagtcagggtcagcaagatgggg 204
           | ||||   ||| |||||||||||||||||||||| ||||||||||| | |||| | |||
Sbjct: 144 ggcttccagctcttccgcaacatcaccggcaaccccgaagtcagggttaacaaggtaggg 203

                                                                       
Query: 205 agggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctc 264
           |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || 
Sbjct: 204 agggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggcta 263

                                                                      
Query: 265 agagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 323
           |||  ||| ||||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 264 agaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 322
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>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds
          Length = 545

 Score =  228 bits (115), Expect = 1e-56
 Identities = 208/239 (87%)
 Strand = Plus / Plus

                                                                       
Query: 85  tgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgc 144
           |||||||| || |||||||||||||| |||||||||| |||||| ||| |||||||||||
Sbjct: 56  tgggtccgaccggaggtgtacccgctgttcgcggcgatgggcgtggccgtcggcatctgc 115

                                                                       
Query: 145 gccttcagcctcctccgcaacatcaccggcaacccagaagtcagggtcagcaagatgggg 204
           | ||||   ||| |||||||||||||||||||||| ||||||||||| | |||| | |||
Sbjct: 116 ggcttccagctcttccgcaacatcaccggcaaccccgaagtcagggttaacaaggtaggg 175

                                                                       
Query: 205 agggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctc 264
           |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || 
Sbjct: 176 agggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggcta 235

                                                                      
Query: 265 agagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 323
           |||  ||| ||||  ||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 236 agaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagttcttcac 294
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>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds
          Length = 510

 Score =  220 bits (111), Expect = 3e-54
 Identities = 207/239 (86%)
 Strand = Plus / Plus

                                                                       
Query: 85  tgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgc 144
           |||||||| || |||||||||||||| |||||||||| |||||| ||| |||||||||||
Sbjct: 27  tgggtccgaccggaggtgtacccgctgttcgcggcgatgggcgtggccgtcggcatctgc 86

                                                                       
Query: 145 gccttcagcctcctccgcaacatcaccggcaacccagaagtcagggtcagcaagatgggg 204
           | ||||   ||| |||||||||||||||||||||| ||||||||||| | |||| | |||
Sbjct: 87  ggcttccagctcttccgcaacatcaccggcaaccccgaagtcagggttaacaaggtaggg 146

                                                                       
Query: 205 agggcagcaggagtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctc 264
           |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || 
Sbjct: 147 agggcagctggagtgctcgagaaccatgaggagggaaggcgctacgcagagcatgggcta 206

                                                                      
Query: 265 agagcctacgtgcaggacaagacccccgagatcatgccaggaatcaacaagttcttcac 323
           |||  ||| ||||  ||||||||||| |||||||||||||  ||||||||||| |||||
Sbjct: 207 agaaactatgtgcgcgacaagacccctgagatcatgccagctatcaacaagtttttcac 265
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>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence
          Length = 792

 Score =  186 bits (94), Expect = 4e-44
 Identities = 213/250 (85%), Gaps = 2/250 (0%)
 Strand = Plus / Plus

                                                                       
Query: 72  gatggccagcaagtgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgc 131
           ||||||||||   |||||||| |||||||||||||| || |||||||||| ||| || ||
Sbjct: 235 gatggccagcccctgggtccgacccgaggtgtaccccctgttcgcggcgatgggagttgc 294

                                                                       
Query: 132 catcggcatctgcgcctt-cagcctcctccgcaacatcaccggcaacccagaagtcaggg 190
           | | ||||||||||  || |||| || |||| ||||||||||||||||| ||||||||||
Sbjct: 295 cgttggcatctgcgggtttcagc-tcttccggaacatcaccggcaacccggaagtcaggg 353

                                                                       
Query: 191 tcagcaagatggggagggcagcaggagtgcttgagaaccatgaggagggcaggcgctacg 250
           | | ||||   ||||||||||| || ||||||||||||||||||||||| ||||| ||||
Sbjct: 354 taaacaaggcagggagggcagccggcgtgcttgagaaccatgaggaggggaggcgttacg 413

                                                                       
Query: 251 ccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccaggaatca 310
           ||  ||| |||||||||  ||  ||||| |||||||||||||||||||||||||  ||||
Sbjct: 414 ccatgcatggcctcagaagctttgtgcacgacaagacccccgagatcatgccagctatca 473

                     
Query: 311 acaagttctt 320
           ||||||||||
Sbjct: 474 acaagttctt 483
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>gb|AY104072.1| Zea mays PCO110104 mRNA sequence
          Length = 727

 Score =  149 bits (75), Expect = 1e-32
 Identities = 191/227 (84%), Gaps = 2/227 (0%)
 Strand = Plus / Plus

                                                                       
Query: 98  aggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgcctt-cagcctc 156
           ||||||||||||| ||||||||||||||||| ||| ||||||||||||  || |||| ||
Sbjct: 134 aggtgtacccgctgttcgcggcgacgggcgtggccgtcggcatctgcgggtttcagc-tc 192

                                                                       
Query: 157 ctccgcaacatcaccggcaacccagaagtcagggtcagcaagatggggagggcagcagga 216
            |||| |||||||| |||||||| ||||||||||| | ||||   ||||||||||| || 
Sbjct: 193 ttccggaacatcactggcaacccggaagtcagggtaaacaaggcagggagggcagctggt 252

                                                                       
Query: 217 gtgcttgagaaccatgaggagggcaggcgctacgccgagcacggcctcagagcctacgtg 276
           ||||||||||||||||||||||| || || ||||||  ||| ||||| |||  ||  |||
Sbjct: 253 gtgcttgagaaccatgaggaggggagacgttacgccatgcatggcctaagaagctttgtg 312

                                                          
Query: 277 caggacaagacccccgagatcatgccaggaatcaacaagttcttcac 323
           || |||||||| || ||||||||||| | | | ||||||||||||||
Sbjct: 313 cacgacaagactcctgagatcatgcctgcagttaacaagttcttcac 359
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Minus

                                                                           
Query: 185     tcagggtcagcaagatggggagggcagcaggagtgcttgagaaccatgaggagggcaggc 244
               ||||||| | |||| | ||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 7602883 tcagggttaacaaggtagggagggcagctggagtgctcgagaaccatgaggagggaaggc 7602824

                                                                           
Query: 245     gctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccag 304
               ||||||| ||||| || || |||  ||| ||||  ||||||||||| |||||||||||||
Sbjct: 7602823 gctacgcagagcatgggctaagaaactatgtgcgcgacaagacccctgagatcatgccag 7602764

                                  
Query: 305     gaatcaacaagttcttcac 323
                 |||||||||||||||||
Sbjct: 7602763 ctatcaacaagttcttcac 7602745



 Score =  103 bits (52), Expect = 5e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                           
Query: 98      aggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgccttcagcctcc 157
               ||||||||||||| |||||||||| |||||| ||| |||||||||||| ||||   ||| 
Sbjct: 7603949 aggtgtacccgctgttcgcggcgatgggcgtggccgtcggcatctgcggcttccagctct 7603890

                                               
Query: 158     tccgcaacatcaccggcaacccagaagtcagg 189
               |||||||||||||||||||||| |||||||||
Sbjct: 7603889 tccgcaacatcaccggcaaccccgaagtcagg 7603858
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Minus

                                                                         
Query: 185   tcagggtcagcaagatggggagggcagcaggagtgcttgagaaccatgaggagggcaggc 244
             ||||||| | |||| | ||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 26138 tcagggttaacaaggtagggagggcagctggagtgctcgagaaccatgaggagggaaggc 26079

                                                                         
Query: 245   gctacgccgagcacggcctcagagcctacgtgcaggacaagacccccgagatcatgccag 304
             ||||||| ||||| || || |||  ||| ||||  ||||||||||| |||||||||||||
Sbjct: 26078 gctacgcagagcatgggctaagaaactatgtgcgcgacaagacccctgagatcatgccag 26019

                                
Query: 305   gaatcaacaagttcttcac 323
               |||||||||||||||||
Sbjct: 26018 ctatcaacaagttcttcac 26000



 Score =  103 bits (52), Expect = 5e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                         
Query: 98    aggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgccttcagcctcc 157
             ||||||||||||| |||||||||| |||||| ||| |||||||||||| ||||   ||| 
Sbjct: 27204 aggtgtacccgctgttcgcggcgatgggcgtggccgtcggcatctgcggcttccagctct 27145

                                             
Query: 158   tccgcaacatcaccggcaacccagaagtcagg 189
             |||||||||||||||||||||| |||||||||
Sbjct: 27144 tccgcaacatcaccggcaaccccgaagtcagg 27113
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>ref|XM_477421.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 297

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  gtgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctg 143
           |||| |||| |||||||||||||||||||||   || || ||||||||| ||  ||||||
Sbjct: 39  gtggatccgccccgaggtgtacccgctcttcctcgccaccggcgtcgccgtctccatctg 98

                                                           
Query: 144 cgccttcagcctcctccgcaacatcaccggcaacccagaagtcagggt 191
           || |  |   ||| |||||||||||||||||||||| |||||||||||
Sbjct: 99  cgtcggccagctcgtccgcaacatcaccggcaaccccgaagtcagggt 146
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 158      tccgcaacatcaccggcaacccagaagtcagg 189
                |||||||||||||||||||||| |||||||||
Sbjct: 10264349 tccgcaacatcaccggcaaccccgaagtcagg 10264380
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>dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0032G22
          Length = 127365

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                              
Query: 158    tccgcaacatcaccggcaacccagaagtcagg 189
              |||||||||||||||||||||| |||||||||
Sbjct: 123086 tccgcaacatcaccggcaaccccgaagtcagg 123117
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>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1029H08
          Length = 137050

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 158   tccgcaacatcaccggcaacccagaagtcagg 189
             |||||||||||||||||||||| |||||||||
Sbjct: 86268 tccgcaacatcaccggcaaccccgaagtcagg 86299
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>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence
          Length = 567

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 295 atcatgccaggaatcaacaagttcttcac 323
           |||||||| ||||||||||||||||||||
Sbjct: 282 atcatgcctggaatcaacaagttcttcac 310
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>gb|AY105424.1| Zea mays PCO129918 mRNA sequence
          Length = 681

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 84  gtgggtccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctg 143
           |||| |||||||||||||||||||||| |||| | ||| || ||| ||| | ||||||||
Sbjct: 104 gtggatccgtcccgaggtgtacccgctgttcgtgccgatggccgtggccttgggcatctg 163

            
Query: 144 c 144
           |
Sbjct: 164 c 164
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>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 176    acccagaagtcagggtcagcaaga 199
              ||||||||||||||||||||||||
Sbjct: 130397 acccagaagtcagggtcagcaaga 130420
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>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 295   atcatgccaggaatcaacaagtt 317
             |||||||||||||||||||||||
Sbjct: 15107 atcatgccaggaatcaacaagtt 15085
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>ref|XM_477418.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 587

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 89  tccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgc 146
           ||||||| |||||||||||||| |||||| | || ||||| ||| | || ||||||||
Sbjct: 63  tccgtcctgaggtgtacccgctgttcgcgaccaccggcgtggccgtggggatctgcgc 120
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>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 217   gtgcttgagaaccatgaggagggcag 242
             ||||||| ||||||||||||||||||
Sbjct: 39861 gtgcttgtgaaccatgaggagggcag 39836
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>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 217   gtgcttgagaaccatgaggagggcag 242
             ||||||| ||||||||||||||||||
Sbjct: 10605 gtgcttgtgaaccatgaggagggcag 10630
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>dbj|AK100692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114G05, full
           insert sequence
          Length = 587

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 89  tccgtcccgaggtgtacccgctcttcgcggcgacgggcgtcgccatcggcatctgcgc 146
           ||||||| |||||||||||||| |||||| | || ||||| ||| | || ||||||||
Sbjct: 62  tccgtcctgaggtgtacccgctgttcgcgaccaccggcgtggccgtggggatctgcgc 119
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 114     cgcggcgacgggcgtcgccatcggca 139
               ||||||| ||||||||||||||||||
Sbjct: 1067582 cgcggcggcgggcgtcgccatcggca 1067557
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>ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 mRNA, complete cds
          Length = 588

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 295 atcatgccaggaatcaacaagttcttcac 323
           |||||||| ||| ||||||||||||||||
Sbjct: 294 atcatgcctggactcaacaagttcttcac 322
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>gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete sequence
          Length = 81854

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   aagatggggagggcagcagga 216
             |||||||||||||||||||||
Sbjct: 46585 aagatggggagggcagcagga 46605
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>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 295   atcatgccaggaatcaacaagttcttcac 323
             |||||||| ||| ||||||||||||||||
Sbjct: 12968 atcatgcctggactcaacaagttcttcac 12996
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>gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 558

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 295 atcatgccaggaatcaacaagttcttcac 323
           |||||||| ||| ||||||||||||||||
Sbjct: 294 atcatgcctggactcaacaagttcttcac 322
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>gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromosome 7, complete
            sequence
          Length = 162075

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 196  aagatggggagggcagcagga 216
            |||||||||||||||||||||
Sbjct: 3876 aagatggggagggcagcagga 3856
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>emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 295 atcatgccaggaatcaacaagttcttcac 323
           |||||||| ||| ||||||||||||||||
Sbjct: 276 atcatgcctggactcaacaagttcttcac 304
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>emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH57ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 515

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 295 atcatgccaggaatcaacaagttcttcac 323
           |||||||| ||| ||||||||||||||||
Sbjct: 240 atcatgcctggactcaacaagttcttcac 212
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>gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 350

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 295 atcatgccaggaatcaacaagttcttcac 323
           |||||||| ||| ||||||||||||||||
Sbjct: 223 atcatgcctggactcaacaagttcttcac 251
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 373     aaactgttgtggtcaagtgc 392
               ||||||||||||||||||||
Sbjct: 1954929 aaactgttgtggtcaagtgc 1954948
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>gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete sequence
          Length = 39974

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   gggagggcagcaggagtgct 221
             ||||||||||||||||||||
Sbjct: 18341 gggagggcagcaggagtgct 18360
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>ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7977.2), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 gcagcaggagtgcttgagaa 227
           ||||||||||||||||||||
Sbjct: 898 gcagcaggagtgcttgagaa 917
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>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 348   ctgtctgtctgtgactcgctattagaaa 375
             |||| ||||||||||||||| |||||||
Sbjct: 18882 ctgtgtgtctgtgactcgcttttagaaa 18855
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   ggcgctacgccgagcacggc 261
             ||||||||||||||||||||
Sbjct: 58276 ggcgctacgccgagcacggc 58257
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   ggcgctacgccgagcacggc 261
             ||||||||||||||||||||
Sbjct: 21942 ggcgctacgccgagcacggc 21961
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>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence
          Length = 202361

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 192    cagcaagatggggagggcagcagg 215
              ||||||| ||||||||||||||||
Sbjct: 117794 cagcaaggtggggagggcagcagg 117817
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>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative
            major fimbrial structural subunit (fimA) genes, complete
            cds
          Length = 12256

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  ggcgctacgccgagcacggc 261
            ||||||||||||||||||||
Sbjct: 4545 ggcgctacgccgagcacggc 4564


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,501,182
Number of Sequences: 3902068
Number of extensions: 3501182
Number of successful extensions: 92102
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91933
Number of HSP's gapped (non-prelim): 167
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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